Wall clock time and date at job start Mon Mar 30 2020 19:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47680 * 2 1 4 4 C 1.50703 * 109.47010 * 239.99763 * 2 1 3 5 5 H 1.07997 * 119.99850 * 240.00013 * 4 2 1 6 6 C 1.37880 * 119.99986 * 60.00231 * 4 2 1 7 7 N 1.31515 * 119.99697 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 119.99946 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47291 * 60.00017 * 8 6 4 10 10 H 1.48504 * 109.47166 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47399 * 299.99879 * 8 6 4 12 12 C 1.50703 * 109.46945 * 120.00085 * 2 1 3 13 13 O 1.21285 * 120.00082 * 120.00312 * 12 2 1 14 14 N 1.34776 * 120.00105 * 299.99427 * 12 2 1 15 15 C 1.46500 * 120.00089 * 180.02562 * 14 12 2 16 16 H 1.08998 * 109.59043 * 35.19111 * 15 14 12 17 17 C 1.53096 * 109.53409 * 275.00233 * 15 14 12 18 18 C 1.52990 * 109.50569 * 180.79727 * 17 15 14 19 19 N 1.46976 * 109.53728 * 60.89792 * 18 17 15 20 20 C 1.46554 * 110.98782 * 300.53740 * 19 18 17 21 21 C 1.53442 * 113.52734 * 286.90399 * 20 19 18 22 22 C 1.53846 * 86.97697 * 220.08743 * 21 20 19 23 23 C 1.53411 * 113.58770 * 189.04119 * 20 19 18 24 24 C 1.52781 * 113.01175 * 57.91246 * 20 19 18 25 25 H 1.08995 * 109.47040 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46838 * 300.00331 * 1 2 3 27 27 H 1.08996 * 109.47009 * 60.00423 * 1 2 3 28 28 H 0.96998 * 119.99910 * 180.02562 * 7 6 4 29 29 H 0.97000 * 119.99596 * 0.02562 * 14 12 2 30 30 H 1.09000 * 109.46368 * 300.81117 * 17 15 14 31 31 H 1.09002 * 109.46287 * 60.79609 * 17 15 14 32 32 H 1.09008 * 109.45510 * 180.91199 * 18 17 15 33 33 H 1.08992 * 109.46160 * 300.88449 * 18 17 15 34 34 H 1.00903 * 111.00463 * 64.48441 * 19 18 17 35 35 H 1.08994 * 113.63318 * 334.61570 * 21 20 19 36 36 H 1.09004 * 113.62967 * 105.57254 * 21 20 19 37 37 H 1.08995 * 113.60815 * 270.60383 * 22 21 20 38 38 H 1.09007 * 113.67387 * 139.74378 * 22 21 20 39 39 H 1.09010 * 113.62752 * 254.37506 * 23 20 19 40 40 H 1.08997 * 113.63308 * 25.32614 * 23 20 19 41 41 H 1.08995 * 109.54118 * 184.58377 * 24 20 19 42 42 H 1.09002 * 109.53923 * 64.32182 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8280 -2.5199 -4.0081 10 1 1.8269 -0.4200 -5.2204 11 1 3.8075 -1.1191 -4.0077 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.1955 -0.9403 3.6508 16 1 3.1963 -1.3300 3.4645 17 6 1.2523 -2.0955 3.9964 18 6 1.7524 -2.8036 5.2570 19 7 1.7672 -1.8556 6.3801 20 6 2.6406 -0.7146 6.0924 21 6 4.1351 -1.0575 6.1495 22 6 4.3378 0.3034 6.8378 23 6 2.8748 0.1996 7.3019 24 6 2.2386 0.0412 4.8270 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7081 1.1608 -3.4844 29 1 1.1489 0.5386 2.5435 30 1 0.2497 -1.7057 4.1722 31 1 1.2267 -2.8037 3.1681 32 1 1.0893 -3.6360 5.4931 33 1 2.7609 -3.1799 5.0863 34 1 0.8331 -1.5480 6.6061 35 1 4.3638 -1.9094 6.7898 36 1 4.6056 -1.1253 5.1686 37 1 4.5179 1.1222 6.1414 38 1 5.0581 0.2773 7.6556 39 1 2.3314 1.1431 7.2481 40 1 2.7552 -0.3050 8.2607 41 1 2.9689 0.8239 4.6222 42 1 1.2537 0.4871 4.9660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341150443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:22 Heat of formation + Delta-G solvation = -53.940967 kcal Electronic energy + Delta-G solvation = -21041.308322 eV Core-core repulsion = 18019.984248 eV Total energy + Delta-G solvation = -3021.324073 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.59109 -40.28666 -37.11360 -35.77974 -35.09259 -32.74823 -30.82394 -30.12592 -27.22473 -26.63786 -25.10609 -24.29662 -23.52303 -21.77978 -21.16724 -19.20937 -18.41956 -17.99782 -17.11648 -16.95007 -16.36587 -16.05939 -15.81306 -15.74203 -15.22149 -14.81493 -14.60891 -14.31548 -13.73013 -13.66130 -13.38865 -13.16905 -12.98943 -12.81320 -12.70360 -12.61904 -12.54165 -12.24917 -12.12804 -12.02499 -11.90149 -11.50214 -11.26863 -11.07863 -10.94980 -10.63518 -10.36186 -9.96484 -9.41557 -8.17042 -6.27581 1.39313 1.40778 1.49446 1.91263 2.30873 2.49237 3.12356 3.27100 3.49467 3.69822 3.84968 3.92317 3.96560 4.08428 4.14016 4.27578 4.41745 4.45013 4.56095 4.71574 4.74572 4.83422 4.90840 4.92755 4.96513 4.98147 4.99516 5.05000 5.11921 5.13197 5.18858 5.44118 5.47260 5.50371 5.62614 5.73164 5.91873 6.10634 6.19476 6.52405 6.72270 6.84567 7.38027 7.53871 8.88577 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035833 B = 0.004142 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.225467 B = 6759.085682 C = 6792.286912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.024 3.976 3 H 0.040 0.960 4 C -0.531 4.531 5 H 0.046 0.954 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.273 1.273 11 H -0.277 1.277 12 C 0.522 3.478 13 O -0.588 6.588 14 N -0.722 5.722 15 C 0.147 3.853 16 H 0.053 0.947 17 C -0.159 4.159 18 C 0.069 3.931 19 N -0.661 5.661 20 C 0.086 3.914 21 C -0.132 4.132 22 C -0.138 4.138 23 C -0.110 4.110 24 C -0.124 4.124 25 H 0.020 0.980 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.265 0.735 29 H 0.408 0.592 30 H 0.075 0.925 31 H 0.039 0.961 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.348 0.652 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.318 0.948 20.828 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.002 3.998 3 H 0.058 0.942 4 C -0.569 4.569 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.202 1.202 12 C 0.311 3.689 13 O -0.467 6.467 14 N -0.375 5.375 15 C 0.042 3.958 16 H 0.071 0.929 17 C -0.200 4.200 18 C -0.062 4.062 19 N -0.290 5.290 20 C -0.006 4.006 21 C -0.170 4.170 22 C -0.175 4.175 23 C -0.148 4.148 24 C -0.163 4.163 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.244 0.756 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.167 0.833 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.574 0.012 20.979 20.987 hybrid contribution -0.378 0.235 -2.074 2.121 sum 0.197 0.247 18.906 18.908 Atomic orbital electron populations 1.21531 0.95012 0.99260 1.01688 1.18811 0.95360 0.95860 0.89731 0.94225 1.21251 1.31697 1.12743 0.91212 0.93525 1.25592 0.95172 0.95746 1.01395 1.69937 1.37099 1.23536 1.24395 0.85660 0.78661 0.78734 0.78876 1.20217 1.19759 1.20219 1.21547 0.78027 0.83651 0.85689 1.90502 1.39994 1.28705 1.87537 1.46116 1.54231 1.32363 1.04744 1.20895 0.97144 0.93218 0.84532 0.92896 1.22577 0.99785 0.97998 0.99637 1.21877 1.01512 0.95423 0.87338 1.60937 1.15648 1.14997 1.37370 1.22060 0.93559 0.91028 0.93938 1.22992 0.94856 0.98903 1.00292 1.22772 0.97584 0.96634 1.00555 1.22889 0.96063 0.98759 0.97089 1.22147 1.03496 0.97616 0.93079 0.96056 0.93004 0.91070 0.92553 0.75608 0.90682 0.94169 0.89143 0.92085 0.83254 0.89401 0.93620 0.90255 0.90138 0.90382 0.88523 0.90481 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 8.87 71.98 0.64 -4.73 16 2 C 0.02 1.20 2.64 -12.28 -0.03 1.17 16 3 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 4 C -0.53 -31.27 8.37 25.60 0.21 -31.06 16 5 H 0.05 2.94 6.75 -2.91 -0.02 2.92 16 6 C 0.02 1.14 5.30 84.66 0.45 1.59 16 7 N -0.91 -51.49 11.32 21.45 0.24 -51.25 16 8 Si 0.96 45.45 29.54 68.60 2.03 47.48 16 9 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 12 C 0.52 24.39 7.11 87.66 0.62 25.02 16 13 O -0.59 -32.13 15.13 -3.05 -0.05 -32.18 16 14 N -0.72 -24.78 4.98 -441.97 -2.20 -26.98 16 15 C 0.15 4.31 2.42 45.11 0.11 4.42 16 16 H 0.05 1.91 6.93 -2.39 -0.02 1.89 16 17 C -0.16 -4.31 5.61 30.62 0.17 -4.13 16 18 C 0.07 1.50 6.46 86.29 0.56 2.05 16 19 N -0.66 -11.84 6.56 -469.67 -3.08 -14.92 16 20 C 0.09 1.57 0.95 3.81 0.00 1.57 16 21 C -0.13 -2.62 6.78 31.03 0.21 -2.41 16 22 C -0.14 -2.13 7.73 31.16 0.24 -1.88 16 23 C -0.11 -1.54 7.46 31.02 0.23 -1.31 16 24 C -0.12 -2.56 4.62 30.61 0.14 -2.42 16 25 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 1.90 7.56 -2.39 -0.02 1.88 16 27 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 28 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 29 H 0.41 11.67 8.02 -92.71 -0.74 10.93 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.70 8.14 -2.38 -0.02 1.69 16 33 H 0.06 1.51 7.75 -2.39 -0.02 1.49 16 34 H 0.35 5.18 8.89 -89.69 -0.80 4.38 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.04 1.09 7.43 -2.38 -0.02 1.07 16 37 H 0.08 1.25 7.60 -2.39 -0.02 1.23 16 38 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.08 0.94 8.09 -2.38 -0.02 0.92 16 40 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.08 1.62 7.30 -2.39 -0.02 1.60 16 42 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -67.57 327.16 -0.02 -67.59 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -0.53 Total: 22.38 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 3.56 Total: -12.13 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -5.04 Total: -93.14 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.05 Total: -32.18 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -67.57 -0.02 -67.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341150443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.654 kcal (2) G-P(sol) polarization free energy of solvation -67.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds