Wall clock time and date at job start Mon Mar 30 2020 19:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 H 1.08000 * 119.99302 * 239.99789 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.72322 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47154 * 89.99418 * 8 6 4 10 10 H 1.48493 * 109.47010 * 209.99942 * 8 6 4 11 11 H 1.48502 * 109.46736 * 329.99638 * 8 6 4 12 12 C 1.50696 * 109.47505 * 120.00678 * 2 1 3 13 13 O 1.21281 * 119.99992 * 119.99863 * 12 2 1 14 14 N 1.34778 * 119.99830 * 299.99869 * 12 2 1 15 15 C 1.48117 * 127.84324 * 0.02630 * 14 12 2 16 16 C 1.54327 * 104.68851 * 219.72223 * 15 14 12 17 17 H 1.09003 * 111.84802 * 214.56058 * 16 15 14 18 18 C 1.54168 * 108.86336 * 90.49594 * 16 15 14 19 19 C 1.54847 * 104.32362 * 271.22377 * 18 16 15 20 20 C 1.54843 * 102.73543 * 321.81377 * 19 18 16 21 21 C 1.54919 * 104.83761 * 336.05035 * 16 15 14 22 22 C 1.53001 * 111.92145 * 237.67317 * 21 16 15 23 23 N 1.46900 * 109.46809 * 179.97438 * 22 21 16 24 24 C 1.48116 * 127.84044 * 179.70028 * 14 12 2 25 25 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 27 27 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 28 28 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 29 29 H 1.08994 * 110.39226 * 338.52539 * 15 14 12 30 30 H 1.08998 * 110.39371 * 100.80392 * 15 14 12 31 31 H 1.08994 * 110.45985 * 29.93062 * 18 16 15 32 32 H 1.08995 * 110.46379 * 152.51481 * 18 16 15 33 33 H 1.08999 * 110.75883 * 80.13124 * 19 18 16 34 34 H 1.09002 * 110.75388 * 203.50308 * 19 18 16 35 35 H 1.08997 * 110.45814 * 156.90368 * 20 19 18 36 36 H 1.08996 * 110.46591 * 279.35102 * 20 19 18 37 37 H 1.09005 * 109.46969 * 299.99572 * 22 21 16 38 38 H 1.09002 * 109.46969 * 59.99888 * 22 21 16 39 39 H 1.00900 * 111.00266 * 56.04421 * 23 22 21 40 40 H 1.00905 * 111.00077 * 179.97438 * 23 22 21 41 41 H 1.09003 * 110.39531 * 259.08627 * 24 14 12 42 42 H 1.09006 * 110.39534 * 21.48457 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6945 -0.2424 -2.4828 7 7 0.9335 0.8234 -2.6033 8 14 2.3165 -1.1232 -4.0082 9 1 1.3411 -2.1690 -4.4082 10 1 2.4753 -0.1452 -5.1142 11 1 3.6277 -1.7556 -3.7145 12 6 2.0324 -0.7105 1.2303 13 8 2.7297 -1.6966 1.1189 14 7 1.7068 -0.2502 2.4545 15 6 0.8735 0.9274 2.7905 16 6 1.5828 1.5771 3.9974 17 1 0.8720 2.0177 4.6966 18 6 2.5965 2.6167 3.4794 19 6 3.9002 1.8082 3.2681 20 6 3.8948 0.8317 4.4698 21 6 2.3953 0.4283 4.6457 22 6 2.0121 0.2141 6.1114 23 7 2.8117 -0.8838 6.6710 24 6 2.0958 -0.8108 3.7691 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 0.6955 1.1524 -3.4842 29 1 0.8404 1.6213 1.9507 30 1 -0.1342 0.6141 3.0634 31 1 2.2560 3.0438 2.5362 32 1 2.7504 3.4010 4.2205 33 1 3.8673 1.2615 2.3258 34 1 4.7710 2.4628 3.3060 35 1 4.5033 -0.0456 4.2505 36 1 4.2576 1.3310 5.3682 37 1 2.2042 1.1276 6.6743 38 1 0.9536 -0.0375 6.1772 39 1 3.7986 -0.7039 6.5632 40 1 2.5774 -1.0448 7.6392 41 1 1.2750 -1.3893 4.1932 42 1 2.9868 -1.4307 3.6692 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341305755.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:47 Heat of formation + Delta-G solvation = -65.700577 kcal Electronic energy + Delta-G solvation = -21762.710492 eV Core-core repulsion = 18740.876484 eV Total energy + Delta-G solvation = -3021.834008 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.68941 -39.55243 -35.91688 -35.59239 -34.90186 -32.62194 -30.99858 -30.28090 -27.30511 -26.49641 -26.36934 -24.19340 -23.39377 -21.19269 -20.27867 -19.69811 -18.33983 -17.61842 -17.30443 -16.82255 -16.43297 -15.92559 -15.60425 -15.38176 -15.13785 -14.60596 -14.52589 -14.26910 -13.87557 -13.75562 -13.50702 -13.31181 -12.97326 -12.79168 -12.70242 -12.50148 -12.24246 -12.05412 -11.85516 -11.72303 -11.65672 -11.64299 -11.59355 -11.36391 -11.04937 -10.61577 -10.29655 -9.55161 -9.41237 -8.16997 -6.27747 1.38337 1.38804 1.51124 1.91854 2.20093 2.45654 3.11704 3.28971 3.51541 3.58196 3.96699 4.16449 4.17731 4.23710 4.29855 4.37722 4.51603 4.62663 4.68120 4.71155 4.74377 4.79057 4.83002 4.93742 4.97349 4.99152 5.02225 5.05164 5.09965 5.20524 5.23327 5.38134 5.45884 5.46866 5.59412 5.71036 5.95131 6.20918 6.33905 6.70455 6.71066 6.83842 7.38345 7.50716 8.88820 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031317 B = 0.005355 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.872458 B = 5227.597798 C = 5378.075771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.037 3.963 3 H 0.034 0.966 4 C -0.532 4.532 5 H 0.044 0.956 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.271 1.271 11 H -0.281 1.281 12 C 0.538 3.462 13 O -0.597 6.597 14 N -0.625 5.625 15 C 0.098 3.902 16 C -0.090 4.090 17 H 0.127 0.873 18 C -0.111 4.111 19 C -0.129 4.129 20 C -0.103 4.103 21 C -0.061 4.061 22 C 0.092 3.908 23 N -0.863 5.863 24 C 0.126 3.874 25 H 0.017 0.983 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.266 0.734 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.024 0.976 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.343 0.657 40 H 0.352 0.648 41 H 0.068 0.932 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 6.608 20.020 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.016 3.984 3 H 0.052 0.948 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.198 1.198 10 H -0.196 1.196 11 H -0.206 1.206 12 C 0.330 3.670 13 O -0.478 6.478 14 N -0.359 5.359 15 C -0.024 4.024 16 C -0.109 4.109 17 H 0.145 0.855 18 C -0.148 4.148 19 C -0.167 4.167 20 C -0.140 4.140 21 C -0.062 4.062 22 C -0.038 4.038 23 N -0.395 5.395 24 C 0.003 3.997 25 H 0.036 0.964 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.043 0.957 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.086 0.914 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.298 5.711 19.161 19.996 hybrid contribution 0.841 -0.099 -0.781 1.152 sum 0.542 5.612 18.380 19.225 Atomic orbital electron populations 1.21658 0.95102 0.99178 1.01982 1.18660 0.95265 0.95344 0.89179 0.94815 1.21277 1.31672 1.12792 0.91291 0.93802 1.25583 0.95108 0.95753 1.01313 1.69942 1.36839 1.23686 1.24350 0.85593 0.78582 0.78629 0.79072 1.19844 1.19576 1.20593 1.21294 0.78051 0.83418 0.84286 1.90495 1.41009 1.29390 1.86907 1.49083 1.51824 1.30411 1.04587 1.22786 0.94465 0.87087 0.98093 1.22785 0.97626 0.94720 0.95806 0.85544 1.22400 0.93913 0.97304 1.01230 1.22425 0.98910 0.97992 0.97380 1.22677 0.94739 0.98273 0.98327 1.22503 0.95538 0.93219 0.94943 1.21606 0.98355 0.93095 0.90793 1.58615 1.10254 1.46003 1.24598 1.22281 0.99478 0.96066 0.81857 0.96419 0.92566 0.90902 0.92503 0.90770 0.89882 0.92447 0.88723 0.95740 0.90757 0.93621 0.89223 0.92731 0.90207 0.84379 0.83386 0.91428 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.72 71.98 0.63 -5.21 16 2 C 0.04 1.96 1.97 -12.29 -0.02 1.93 16 3 H 0.03 1.89 7.95 -2.39 -0.02 1.87 16 4 C -0.53 -32.41 8.38 25.60 0.21 -32.20 16 5 H 0.04 2.88 6.75 -2.91 -0.02 2.86 16 6 C 0.02 1.25 5.30 84.65 0.45 1.70 16 7 N -0.91 -52.14 11.30 21.45 0.24 -51.90 16 8 Si 0.96 46.31 29.54 68.60 2.03 48.33 16 9 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 12 C 0.54 27.15 7.26 87.66 0.64 27.79 16 13 O -0.60 -35.15 15.72 -3.03 -0.05 -35.20 16 14 N -0.63 -23.76 2.58 -807.60 -2.08 -25.84 16 15 C 0.10 2.78 4.69 86.52 0.41 3.19 16 16 C -0.09 -1.83 3.56 -9.29 -0.03 -1.86 16 17 H 0.13 1.68 7.88 -2.39 -0.02 1.66 16 18 C -0.11 -2.38 6.27 31.62 0.20 -2.18 16 19 C -0.13 -3.43 6.54 31.85 0.21 -3.22 16 20 C -0.10 -2.30 5.03 32.36 0.16 -2.14 16 21 C -0.06 -1.30 0.81 -49.80 -0.04 -1.34 16 22 C 0.09 1.37 5.78 86.30 0.50 1.87 16 23 N -0.86 -13.21 9.39 -186.71 -1.75 -14.97 16 24 C 0.13 3.98 5.88 86.65 0.51 4.49 16 25 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 2.21 5.34 -2.39 -0.01 2.19 16 27 H 0.07 3.81 6.05 -2.39 -0.01 3.79 16 28 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.07 2.33 5.84 -2.39 -0.01 2.31 16 30 H 0.08 2.05 8.01 -2.39 -0.02 2.03 16 31 H 0.06 1.41 7.44 -2.39 -0.02 1.39 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.02 0.88 7.76 -2.39 -0.02 0.86 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.04 1.23 7.54 -2.39 -0.02 1.21 16 36 H 0.09 1.46 7.99 -2.39 -0.02 1.44 16 37 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.34 5.03 8.13 -89.69 -0.73 4.30 16 40 H 0.35 3.80 9.08 -89.69 -0.81 2.99 16 41 H 0.07 2.05 7.99 -2.39 -0.02 2.04 16 42 H 0.05 1.80 7.26 -2.38 -0.02 1.79 16 Total: -1.00 -73.37 320.05 1.68 -71.69 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -0.52 Total: 15.05 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 3.81 Total: -7.18 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -3.59 Total: -92.70 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -0.05 Total: -35.20 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -73.37 1.68 -71.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341305755.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.990 kcal (2) G-P(sol) polarization free energy of solvation -73.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds