Wall clock time and date at job start Mon Mar 30 2020 19:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47397 * 2 1 4 4 C 1.50704 * 109.47191 * 240.00419 * 2 1 3 5 5 H 1.08001 * 119.99958 * 239.99753 * 4 2 1 6 6 C 1.37878 * 119.99850 * 59.99786 * 4 2 1 7 7 N 1.31507 * 120.00295 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99818 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47059 * 89.99667 * 8 6 4 10 10 H 1.48501 * 109.47219 * 210.00025 * 8 6 4 11 11 H 1.48504 * 109.46848 * 329.99923 * 8 6 4 12 12 C 1.50693 * 109.47398 * 120.00419 * 2 1 3 13 13 O 1.21282 * 120.00450 * 120.00230 * 12 2 1 14 14 N 1.34780 * 120.00089 * 300.00005 * 12 2 1 15 15 C 1.45900 * 118.48272 * 4.44200 * 14 12 2 16 16 C 1.52939 * 109.88850 * 219.36802 * 15 14 12 17 17 C 1.53015 * 108.93223 * 302.65414 * 16 15 14 18 18 C 1.51678 * 110.04218 * 63.74667 * 17 16 15 19 19 H 1.08995 * 111.99722 * 83.53160 * 18 17 16 20 20 C 1.54152 * 112.64026 * 214.64178 * 18 17 16 21 21 C 1.50804 * 86.96487 * 88.93366 * 20 18 17 22 22 C 1.45091 * 118.48868 * 184.46473 * 14 12 2 23 23 C 1.53001 * 112.25386 * 24.17725 * 22 14 12 24 24 N 1.46892 * 109.47145 * 63.92230 * 23 22 14 25 25 H 1.08997 * 109.46875 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47109 * 299.99379 * 1 2 3 27 27 H 1.08997 * 109.47202 * 59.99954 * 1 2 3 28 28 H 0.96999 * 119.99933 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.39738 * 339.49900 * 15 14 12 30 30 H 1.08997 * 109.39961 * 99.32250 * 15 14 12 31 31 H 1.09004 * 109.56028 * 62.49037 * 16 15 14 32 32 H 1.08996 * 109.55693 * 182.81542 * 16 15 14 33 33 H 1.09003 * 109.48109 * 184.62504 * 17 16 15 34 34 H 1.09000 * 109.48475 * 304.64739 * 17 16 15 35 35 H 1.09003 * 113.63758 * 203.52275 * 20 18 17 36 36 H 1.09009 * 113.63869 * 334.41006 * 20 18 17 37 37 H 1.09002 * 113.71894 * 271.21232 * 21 20 18 38 38 H 1.08993 * 112.74579 * 140.93489 * 21 20 18 39 39 H 1.08997 * 109.46732 * 303.91961 * 23 22 14 40 40 H 1.08999 * 109.46784 * 183.92234 * 23 22 14 41 41 H 1.00901 * 111.00555 * 63.84638 * 24 23 22 42 42 H 1.00907 * 111.00012 * 187.79737 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 1.3428 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1124 11 1 3.6293 -1.7581 -3.7123 12 6 2.0324 -0.7105 1.2303 13 8 2.7297 -1.6965 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 0.7872 0.8784 2.5516 16 6 1.2394 1.8238 3.6655 17 6 1.3166 1.0426 4.9789 18 6 2.3759 -0.0385 4.8793 19 1 3.3737 0.3472 5.0884 20 6 1.9994 -1.3121 5.6618 21 6 1.3161 -1.7863 4.4039 22 6 2.2874 -0.8992 3.6150 23 6 3.6033 -1.6069 3.2853 24 7 4.6022 -0.6138 2.8683 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.7095 1.1619 -3.4844 29 1 0.7728 1.4163 1.6037 30 1 -0.2145 0.5110 2.7747 31 1 2.2220 2.2291 3.4236 32 1 0.5219 2.6380 3.7667 33 1 1.5584 1.7247 5.7940 34 1 0.3559 0.5669 5.1760 35 1 2.8584 -1.9186 5.9490 36 1 1.3138 -1.1299 6.4895 37 1 0.2750 -1.4730 4.3257 38 1 1.4539 -2.8527 4.2258 39 1 3.4399 -2.3194 2.4768 40 1 3.9628 -2.1353 4.1682 41 1 4.8176 0.0211 3.6224 42 1 5.4375 -1.0635 2.5246 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342086464.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:51 Heat of formation + Delta-G solvation = 10.190963 kcal Electronic energy + Delta-G solvation = -22294.874439 eV Core-core repulsion = 19276.331334 eV Total energy + Delta-G solvation = -3018.543104 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.12373 -37.97823 -35.30732 -33.57024 -33.27256 -32.00991 -30.25886 -27.11321 -26.00166 -25.10034 -23.89075 -23.19539 -21.86656 -21.01504 -18.94470 -17.42976 -16.21050 -16.05794 -15.81351 -15.51500 -14.85872 -14.62183 -14.36951 -13.78510 -13.69470 -13.29238 -13.03565 -12.89710 -12.44625 -12.16081 -11.93319 -11.69419 -11.62344 -11.24600 -10.96132 -10.88328 -10.78107 -10.63157 -10.48624 -10.25732 -10.10325 -10.00763 -9.96189 -9.75205 -8.84676 -8.36898 -8.25660 -7.77543 -7.58079 -5.93353 -3.94906 3.39166 3.44567 3.51594 3.80260 3.91445 4.49865 4.54592 4.65430 4.73909 4.89988 5.13783 5.29395 5.37683 5.40786 5.46008 5.51399 5.64322 5.77446 5.81723 5.87516 5.92824 5.96248 6.06791 6.09963 6.18474 6.28690 6.38314 6.47876 6.54954 6.64821 6.74815 6.96099 7.06963 7.44462 7.59794 7.66204 7.86764 7.89981 8.11401 8.27910 8.57373 9.13504 9.52226 9.70034 11.14467 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028518 B = 0.006391 C = 0.005747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.604260 B = 4380.285685 C = 4870.850645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.031 3.969 3 H 0.050 0.950 4 C -0.492 4.492 5 H 0.073 0.927 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.534 3.466 13 O -0.533 6.533 14 N -0.597 5.597 15 C 0.112 3.888 16 C -0.133 4.133 17 C -0.100 4.100 18 C -0.112 4.112 19 H 0.072 0.928 20 C -0.136 4.136 21 C -0.149 4.149 22 C 0.176 3.824 23 C 0.047 3.953 24 N -0.830 5.830 25 H 0.028 0.972 26 H 0.027 0.973 27 H 0.090 0.910 28 H 0.259 0.741 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.145 0.855 40 H 0.009 0.991 41 H 0.322 0.678 42 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.261 0.800 16.137 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.010 3.990 3 H 0.068 0.932 4 C -0.531 4.531 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.326 3.674 13 O -0.410 6.410 14 N -0.330 5.330 15 C -0.011 4.011 16 C -0.172 4.172 17 C -0.138 4.138 18 C -0.132 4.132 19 H 0.090 0.910 20 C -0.174 4.174 21 C -0.189 4.189 22 C 0.089 3.911 23 C -0.083 4.083 24 N -0.359 5.359 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.109 0.891 28 H 0.068 0.932 29 H 0.120 0.880 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.161 0.839 40 H 0.027 0.973 41 H 0.133 0.867 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.012 0.616 15.375 15.388 hybrid contribution 0.815 -0.666 0.122 1.060 sum 0.827 -0.050 15.497 15.519 Atomic orbital electron populations 1.22126 0.97015 0.99940 1.01631 1.18812 0.93794 0.96686 0.89728 0.93238 1.21155 1.30354 1.12528 0.89029 0.90888 1.24934 0.95306 0.95114 0.98996 1.69871 1.37527 1.23207 1.23275 0.86498 0.79396 0.79230 0.82327 1.20840 1.21428 1.19833 1.21767 0.77514 0.83856 0.84255 1.90150 1.38162 1.27229 1.85438 1.47201 1.47022 1.33296 1.05442 1.21684 0.91786 0.87444 1.00212 1.21806 1.02409 0.98011 0.94929 1.21093 0.98322 0.96654 0.97691 1.22522 0.99364 0.94929 0.96388 0.90988 1.22417 1.00565 0.97477 0.96906 1.22825 0.99725 1.00419 0.95912 1.21032 0.93244 0.92388 0.84458 1.22706 0.89176 0.95761 1.00697 1.58339 1.15456 1.21892 1.40187 0.95315 0.95405 0.89100 0.93158 0.88031 0.92927 0.91226 0.90986 0.91971 0.92006 0.90421 0.91376 0.89970 0.91589 0.83864 0.97349 0.86650 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.43 37.16 0.31 -3.17 16 2 C 0.03 0.78 1.83 -92.93 -0.17 0.61 16 3 H 0.05 1.33 7.55 -51.93 -0.39 0.94 16 4 C -0.49 -14.16 8.37 -34.44 -0.29 -14.45 16 5 H 0.07 2.21 6.75 -52.49 -0.35 1.86 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.62 11.32 55.43 0.63 -25.00 16 8 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 9 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.53 12.32 6.57 -10.99 -0.07 12.25 16 13 O -0.53 -13.39 11.37 5.56 0.06 -13.32 16 14 N -0.60 -10.98 2.92 -159.97 -0.47 -11.45 16 15 C 0.11 1.79 4.54 -4.40 -0.02 1.77 16 16 C -0.13 -1.71 6.07 -26.76 -0.16 -1.87 16 17 C -0.10 -1.15 5.41 -27.39 -0.15 -1.30 16 18 C -0.11 -1.42 3.63 -90.66 -0.33 -1.75 16 19 H 0.07 0.89 7.06 -51.93 -0.37 0.53 16 20 C -0.14 -1.55 7.04 -27.24 -0.19 -1.74 16 21 C -0.15 -2.08 6.92 -27.70 -0.19 -2.27 16 22 C 0.18 2.79 1.18 -132.28 -0.16 2.63 16 23 C 0.05 0.78 5.09 -3.83 -0.02 0.76 16 24 N -0.83 -13.42 8.95 -10.37 -0.09 -13.51 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.03 0.54 4.36 -51.93 -0.23 0.31 16 27 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.10 1.80 4.79 -51.93 -0.25 1.55 16 30 H 0.05 0.79 7.60 -51.93 -0.39 0.40 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.69 7.19 -51.93 -0.37 0.32 16 35 H 0.08 0.84 7.39 -51.93 -0.38 0.45 16 36 H 0.07 0.68 8.07 -51.92 -0.42 0.26 16 37 H 0.08 1.14 7.67 -51.93 -0.40 0.74 16 38 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 39 H 0.14 2.93 4.94 -55.26 -0.27 2.65 16 40 H 0.01 0.13 7.05 -51.93 -0.37 -0.24 16 41 H 0.32 4.46 7.89 -39.29 -0.31 4.15 16 42 H 0.34 5.13 9.08 -39.29 -0.36 4.77 16 LS Contribution 308.23 15.07 4.64 4.64 Total: -1.00 -30.53 308.23 -8.20 -38.72 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.42 Total: 9.77 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -1.53 Total: -7.04 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.07 Total: -49.96 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.06 Total: -13.32 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.53 -8.20 -38.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342086464.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.915 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds