Wall clock time and date at job start Mon Mar 30 2020 19:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47397 * 2 1 4 4 C 1.50704 * 109.47191 * 240.00419 * 2 1 3 5 5 H 1.08001 * 119.99958 * 239.99753 * 4 2 1 6 6 C 1.37878 * 119.99850 * 59.99786 * 4 2 1 7 7 N 1.31507 * 120.00295 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99818 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47059 * 89.99667 * 8 6 4 10 10 H 1.48501 * 109.47219 * 210.00025 * 8 6 4 11 11 H 1.48504 * 109.46848 * 329.99923 * 8 6 4 12 12 C 1.50693 * 109.47398 * 120.00419 * 2 1 3 13 13 O 1.21282 * 120.00450 * 120.00230 * 12 2 1 14 14 N 1.34780 * 120.00089 * 300.00005 * 12 2 1 15 15 C 1.45900 * 118.48272 * 4.44200 * 14 12 2 16 16 C 1.52939 * 109.88850 * 219.36802 * 15 14 12 17 17 C 1.53015 * 108.93223 * 302.65414 * 16 15 14 18 18 C 1.51678 * 110.04218 * 63.74667 * 17 16 15 19 19 H 1.08995 * 111.99722 * 83.53160 * 18 17 16 20 20 C 1.54152 * 112.64026 * 214.64178 * 18 17 16 21 21 C 1.50804 * 86.96487 * 88.93366 * 20 18 17 22 22 C 1.45091 * 118.48868 * 184.46473 * 14 12 2 23 23 C 1.53001 * 112.25386 * 24.17725 * 22 14 12 24 24 N 1.46892 * 109.47145 * 63.92230 * 23 22 14 25 25 H 1.08997 * 109.46875 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47109 * 299.99379 * 1 2 3 27 27 H 1.08997 * 109.47202 * 59.99954 * 1 2 3 28 28 H 0.96999 * 119.99933 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.39738 * 339.49900 * 15 14 12 30 30 H 1.08997 * 109.39961 * 99.32250 * 15 14 12 31 31 H 1.09004 * 109.56028 * 62.49037 * 16 15 14 32 32 H 1.08996 * 109.55693 * 182.81542 * 16 15 14 33 33 H 1.09003 * 109.48109 * 184.62504 * 17 16 15 34 34 H 1.09000 * 109.48475 * 304.64739 * 17 16 15 35 35 H 1.09003 * 113.63758 * 203.52275 * 20 18 17 36 36 H 1.09009 * 113.63869 * 334.41006 * 20 18 17 37 37 H 1.09002 * 113.71894 * 271.21232 * 21 20 18 38 38 H 1.08993 * 112.74579 * 140.93489 * 21 20 18 39 39 H 1.08997 * 109.46732 * 303.91961 * 23 22 14 40 40 H 1.08999 * 109.46784 * 183.92234 * 23 22 14 41 41 H 1.00901 * 111.00555 * 63.84638 * 24 23 22 42 42 H 1.00907 * 111.00012 * 187.79737 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 1.3428 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1124 11 1 3.6293 -1.7581 -3.7123 12 6 2.0324 -0.7105 1.2303 13 8 2.7297 -1.6965 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 0.7872 0.8784 2.5516 16 6 1.2394 1.8238 3.6655 17 6 1.3166 1.0426 4.9789 18 6 2.3759 -0.0385 4.8793 19 1 3.3737 0.3472 5.0884 20 6 1.9994 -1.3121 5.6618 21 6 1.3161 -1.7863 4.4039 22 6 2.2874 -0.8992 3.6150 23 6 3.6033 -1.6069 3.2853 24 7 4.6022 -0.6138 2.8683 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.7095 1.1619 -3.4844 29 1 0.7728 1.4163 1.6037 30 1 -0.2145 0.5110 2.7747 31 1 2.2220 2.2291 3.4236 32 1 0.5219 2.6380 3.7667 33 1 1.5584 1.7247 5.7940 34 1 0.3559 0.5669 5.1760 35 1 2.8584 -1.9186 5.9490 36 1 1.3138 -1.1299 6.4895 37 1 0.2750 -1.4730 4.3257 38 1 1.4539 -2.8527 4.2258 39 1 3.4399 -2.3194 2.4768 40 1 3.9628 -2.1353 4.1682 41 1 4.8176 0.0211 3.6224 42 1 5.4375 -1.0635 2.5246 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342086464.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:51 Heat of formation + Delta-G solvation = -10.850739 kcal Electronic energy + Delta-G solvation = -22295.786875 eV Core-core repulsion = 19276.331334 eV Total energy + Delta-G solvation = -3019.455541 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.37685 -39.56788 -36.72909 -35.47887 -34.64748 -33.27346 -32.22576 -28.30521 -27.36229 -27.07569 -25.12563 -24.63960 -23.39568 -22.16684 -20.52267 -18.74104 -18.20284 -17.49605 -17.18714 -16.88356 -16.57312 -16.14425 -15.77568 -15.19630 -14.88492 -14.73284 -14.56289 -14.40342 -13.86230 -13.64453 -13.32447 -13.10697 -12.93030 -12.75454 -12.67413 -12.62680 -12.36631 -12.14101 -11.96712 -11.90914 -11.79134 -11.29044 -11.20941 -11.11093 -10.93924 -10.48249 -9.67906 -9.20159 -9.16025 -8.10817 -6.20094 1.40240 1.40288 1.52660 2.13461 2.35389 2.52182 3.18202 3.46918 3.49573 3.70951 3.84615 4.06639 4.17203 4.23256 4.27800 4.41197 4.52954 4.61874 4.69109 4.74256 4.78853 4.87774 4.92587 5.01322 5.02940 5.06290 5.07970 5.10544 5.13419 5.25608 5.36141 5.43335 5.53603 5.56244 5.78599 5.97820 6.12980 6.29704 6.38289 6.72864 6.79441 6.92326 7.46504 7.81337 8.95061 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028518 B = 0.006391 C = 0.005747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.604260 B = 4380.285685 C = 4870.850645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.029 3.971 3 H 0.028 0.972 4 C -0.520 4.520 5 H 0.047 0.953 6 C 0.017 3.983 7 N -0.913 5.913 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.275 1.275 11 H -0.279 1.279 12 C 0.528 3.472 13 O -0.564 6.564 14 N -0.587 5.587 15 C 0.101 3.899 16 C -0.125 4.125 17 C -0.097 4.097 18 C -0.104 4.104 19 H 0.078 0.922 20 C -0.117 4.117 21 C -0.150 4.150 22 C 0.151 3.849 23 C 0.052 3.948 24 N -0.845 5.845 25 H 0.016 0.984 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.263 0.737 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.102 0.898 40 H 0.033 0.967 41 H 0.336 0.664 42 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.301 1.516 18.536 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.008 3.992 3 H 0.045 0.955 4 C -0.559 4.559 5 H 0.066 0.934 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.780 3.220 9 H -0.200 1.200 10 H -0.200 1.200 11 H -0.205 1.205 12 C 0.319 3.681 13 O -0.444 6.444 14 N -0.318 5.318 15 C -0.021 4.021 16 C -0.163 4.163 17 C -0.134 4.134 18 C -0.123 4.123 19 H 0.096 0.904 20 C -0.155 4.155 21 C -0.190 4.190 22 C 0.065 3.935 23 C -0.078 4.078 24 N -0.375 5.375 25 H 0.035 0.965 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.120 0.880 40 H 0.050 0.950 41 H 0.149 0.851 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.569 1.360 17.818 17.879 hybrid contribution 1.002 -0.875 -0.618 1.467 sum 0.433 0.484 17.200 17.213 Atomic orbital electron populations 1.21945 0.95660 0.99211 1.02334 1.18691 0.94878 0.95248 0.90384 0.95475 1.21306 1.30960 1.12436 0.91179 0.93447 1.25594 0.95382 0.95811 1.01372 1.69958 1.37622 1.23706 1.24047 0.85624 0.78583 0.78528 0.79290 1.20035 1.20047 1.20460 1.21329 0.77737 0.83700 0.85343 1.90202 1.39464 1.28354 1.86332 1.47117 1.46530 1.33375 1.04748 1.21840 0.92229 0.87294 1.00749 1.21761 1.02320 0.97961 0.94301 1.21128 0.98327 0.96518 0.97448 1.22521 1.00384 0.95618 0.93773 0.90413 1.22352 1.00838 0.96080 0.96223 1.22844 0.99604 0.99487 0.97056 1.21459 0.93299 0.94244 0.84503 1.22420 0.90111 0.95311 0.99996 1.58296 1.15679 1.22409 1.41163 0.96504 0.91588 0.91454 0.92794 0.90362 0.91385 0.92508 0.88323 0.89225 0.91071 0.89626 0.88847 0.89705 0.92609 0.88013 0.94963 0.85060 0.84560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.39 8.43 71.98 0.61 -5.78 16 2 C 0.03 1.54 1.83 -12.29 -0.02 1.51 16 3 H 0.03 1.54 7.55 -2.39 -0.02 1.52 16 4 C -0.52 -31.24 8.37 25.60 0.21 -31.03 16 5 H 0.05 3.03 6.75 -2.91 -0.02 3.01 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.91 -52.98 11.32 21.45 0.24 -52.73 16 8 Si 0.95 46.39 29.54 68.60 2.03 48.42 16 9 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 12 C 0.53 25.20 6.57 87.65 0.58 25.77 16 13 O -0.56 -29.75 11.37 -3.04 -0.03 -29.78 16 14 N -0.59 -21.43 2.92 -778.40 -2.27 -23.70 16 15 C 0.10 3.09 4.54 86.47 0.39 3.48 16 16 C -0.13 -2.84 6.07 30.58 0.19 -2.65 16 17 C -0.10 -1.79 5.41 30.17 0.16 -1.63 16 18 C -0.10 -2.25 3.63 -10.82 -0.04 -2.29 16 19 H 0.08 1.63 7.06 -2.39 -0.02 1.62 16 20 C -0.12 -2.20 7.04 30.26 0.21 -1.99 16 21 C -0.15 -3.87 6.92 29.96 0.21 -3.66 16 22 C 0.15 4.58 1.18 4.06 0.00 4.58 16 23 C 0.05 1.72 5.09 86.30 0.44 2.16 16 24 N -0.85 -27.34 8.95 -186.74 -1.67 -29.01 16 25 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 2.57 4.36 -2.39 -0.01 2.56 16 27 H 0.07 3.53 6.07 -2.39 -0.01 3.52 16 28 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.08 2.76 4.79 -2.39 -0.01 2.75 16 30 H 0.07 1.88 7.60 -2.39 -0.02 1.86 16 31 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.23 7.19 -2.39 -0.02 1.22 16 35 H 0.09 1.50 7.39 -2.39 -0.02 1.49 16 36 H 0.09 1.36 8.07 -2.38 -0.02 1.34 16 37 H 0.08 2.13 7.67 -2.39 -0.02 2.11 16 38 H 0.06 1.53 8.09 -2.39 -0.02 1.51 16 39 H 0.10 4.33 4.94 -55.11 -0.27 4.06 16 40 H 0.03 0.90 7.05 -2.39 -0.02 0.88 16 41 H 0.34 8.94 7.89 -89.69 -0.71 8.24 16 42 H 0.34 10.53 9.08 -89.69 -0.81 9.72 16 Total: -1.00 -68.97 308.23 0.94 -68.02 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: -0.74 Total: 28.88 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 3.39 Total: -10.09 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -3.70 Total: -105.44 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.03 Total: -29.78 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -68.97 0.94 -68.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342086464.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.170 kcal (2) G-P(sol) polarization free energy of solvation -68.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds