Wall clock time and date at job start Mon Mar 30 2020 19:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46947 * 2 1 4 4 C 1.50697 * 109.47312 * 239.99587 * 2 1 3 5 5 H 1.08001 * 120.00045 * 240.00029 * 4 2 1 6 6 C 1.37876 * 120.00117 * 60.00128 * 4 2 1 7 7 N 1.31512 * 119.99677 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00116 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47355 * 90.00074 * 8 6 4 10 10 H 1.48504 * 109.47440 * 209.99650 * 8 6 4 11 11 H 1.48498 * 109.47115 * 329.99748 * 8 6 4 12 12 C 1.50701 * 109.47048 * 119.99540 * 2 1 3 13 13 O 1.21283 * 120.00051 * 97.42389 * 12 2 1 14 14 N 1.34782 * 119.99850 * 277.42926 * 12 2 1 15 15 C 1.45097 * 117.90086 * 4.84824 * 14 12 2 16 16 C 1.52944 * 110.22965 * 141.81792 * 15 14 12 17 17 C 1.53018 * 108.93185 * 56.53036 * 16 15 14 18 18 C 1.53058 * 109.41281 * 295.35314 * 17 16 15 19 19 H 1.08998 * 113.67884 * 277.47648 * 18 17 16 20 20 C 1.54150 * 111.68757 * 146.40254 * 18 17 16 21 21 C 1.53870 * 86.93653 * 271.97573 * 20 18 17 22 22 C 1.45093 * 118.47999 * 184.25434 * 14 12 2 23 23 C 1.52999 * 112.25952 * 335.79032 * 22 14 12 24 24 N 1.46905 * 109.47138 * 89.69029 * 23 22 14 25 25 H 1.08992 * 109.47333 * 293.34885 * 1 2 3 26 26 H 1.08997 * 109.46837 * 53.35331 * 1 2 3 27 27 H 1.09000 * 109.46797 * 173.34919 * 1 2 3 28 28 H 0.97003 * 120.00047 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.88818 * 21.16789 * 15 14 12 30 30 H 1.09002 * 108.49976 * 261.59068 * 15 14 12 31 31 H 1.09000 * 109.55632 * 296.69539 * 16 15 14 32 32 H 1.08997 * 109.64866 * 176.42290 * 16 15 14 33 33 H 1.09003 * 109.48008 * 175.36785 * 17 16 15 34 34 H 1.09003 * 109.49198 * 55.34724 * 17 16 15 35 35 H 1.08997 * 113.64104 * 26.49029 * 20 18 17 36 36 H 1.09004 * 113.63781 * 157.46327 * 20 18 17 37 37 H 1.09001 * 113.69130 * 219.46268 * 21 20 18 38 38 H 1.09006 * 113.68608 * 88.33800 * 21 20 18 39 39 H 1.09006 * 109.46779 * 329.69435 * 23 22 14 40 40 H 1.08991 * 109.47461 * 209.69398 * 23 22 14 41 41 H 1.00903 * 110.99503 * 67.09020 * 24 23 22 42 42 H 1.00896 * 110.99797 * 191.04354 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8294 -2.6034 8 14 2.3227 -1.1198 -4.0078 9 1 1.3451 -2.1618 -4.4122 10 1 2.4874 -0.1405 -5.1120 11 1 3.6310 -1.7567 -3.7117 12 6 2.0323 -0.7103 1.2305 13 8 2.3624 -1.8756 1.1658 14 7 2.1147 -0.0507 2.4030 15 6 1.6081 1.3080 2.4547 16 6 0.9098 1.5616 3.7915 17 6 1.8914 1.2679 4.9280 18 6 2.2509 -0.2199 4.9179 19 1 1.5172 -0.8509 5.4195 20 6 3.7052 -0.4576 5.3703 21 6 4.1072 -0.2685 3.8971 22 6 2.6900 -0.7374 3.5443 23 6 2.5816 -2.2585 3.4205 24 7 3.7712 -2.7799 2.7341 25 1 -0.3633 0.4073 0.9434 26 1 -0.3633 0.6134 -0.8245 27 1 -0.3633 -1.0208 -0.1190 28 1 0.7082 1.1606 -3.4844 29 1 0.9021 1.4717 1.6406 30 1 2.4481 1.9946 2.3490 31 1 0.0425 0.9073 3.8800 32 1 0.5891 2.6019 3.8460 33 1 1.4303 1.5240 5.8819 34 1 2.7953 1.8613 4.7903 35 1 4.0898 0.3190 6.0314 36 1 3.8867 -1.4642 5.7472 37 1 4.8896 -0.9512 3.5656 38 1 4.3054 0.7687 3.6269 39 1 1.6903 -2.5137 2.8473 40 1 2.5131 -2.7000 4.4146 41 1 4.5976 -2.6583 3.3002 42 1 3.6464 -3.7483 2.4797 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342086466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:54 Heat of formation + Delta-G solvation = 12.228503 kcal Electronic energy + Delta-G solvation = -22257.770687 eV Core-core repulsion = 19239.315937 eV Total energy + Delta-G solvation = -3018.454750 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.01198 -37.83054 -35.30529 -33.54344 -33.10924 -31.72342 -30.24870 -27.16868 -25.81622 -25.10608 -24.26486 -23.04952 -21.77768 -20.86619 -18.85448 -17.27491 -16.31267 -16.15097 -15.89929 -15.25915 -14.61274 -14.50110 -14.46836 -13.89249 -13.65895 -13.32435 -12.97887 -12.61000 -12.32970 -12.20430 -11.80306 -11.66934 -11.47212 -11.25908 -11.07965 -10.87637 -10.67398 -10.60887 -10.54472 -10.21569 -10.18030 -10.12707 -9.92521 -9.82248 -8.85622 -8.34014 -7.94937 -7.79323 -7.66507 -5.94265 -3.95234 3.39106 3.44437 3.51463 3.86320 3.95154 4.49760 4.54953 4.66159 4.75247 4.99778 5.10247 5.28478 5.38057 5.39470 5.42983 5.52337 5.62787 5.73043 5.83147 5.84202 5.91848 5.94886 6.03098 6.16036 6.24260 6.31589 6.37132 6.41444 6.51049 6.63962 6.75504 6.94802 7.09393 7.47368 7.61469 7.75209 7.85600 8.00024 8.10253 8.26200 8.58201 9.12187 9.55009 9.70072 11.14016 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026599 B = 0.006571 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.424749 B = 4260.094214 C = 4930.705593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.030 3.970 3 H 0.042 0.958 4 C -0.492 4.492 5 H 0.071 0.929 6 C 0.057 3.943 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.506 3.494 13 O -0.500 6.500 14 N -0.608 5.608 15 C 0.110 3.890 16 C -0.132 4.132 17 C -0.099 4.099 18 C -0.114 4.114 19 H 0.077 0.923 20 C -0.138 4.138 21 C -0.147 4.147 22 C 0.173 3.827 23 C 0.100 3.900 24 N -0.810 5.810 25 H 0.012 0.988 26 H 0.087 0.913 27 H 0.033 0.967 28 H 0.259 0.741 29 H 0.098 0.902 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.007 0.993 41 H 0.317 0.683 42 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.656 0.879 16.143 16.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.009 3.991 3 H 0.060 0.940 4 C -0.530 4.530 5 H 0.089 0.911 6 C -0.143 4.143 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.198 1.198 12 C 0.296 3.704 13 O -0.372 6.372 14 N -0.343 5.343 15 C -0.013 4.013 16 C -0.170 4.170 17 C -0.137 4.137 18 C -0.133 4.133 19 H 0.095 0.905 20 C -0.176 4.176 21 C -0.186 4.186 22 C 0.086 3.914 23 C -0.031 4.031 24 N -0.341 5.341 25 H 0.030 0.970 26 H 0.106 0.894 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.024 0.976 41 H 0.130 0.870 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.603 0.890 15.377 15.486 hybrid contribution 0.346 -0.868 0.007 0.935 sum 1.949 0.022 15.384 15.507 Atomic orbital electron populations 1.21747 0.96746 1.00895 0.99318 1.18880 0.93779 0.96584 0.89907 0.93976 1.21130 1.30569 1.12263 0.89068 0.91100 1.24933 0.95296 0.95087 0.98996 1.69889 1.37485 1.23225 1.23289 0.86491 0.79404 0.79227 0.82288 1.20801 1.21450 1.19849 1.21941 0.76479 0.87790 0.84192 1.90602 1.45963 1.16468 1.84191 1.47274 1.63100 1.14013 1.09894 1.21321 0.98320 0.83578 0.98117 1.21771 0.98562 1.01673 0.95000 1.21347 0.99565 0.94319 0.98470 1.22837 0.96909 0.97021 0.96571 0.90492 1.22961 0.96245 1.01315 0.97097 1.23351 0.98817 1.01838 0.94616 1.21077 0.92749 0.92753 0.84857 1.21505 0.96379 0.91310 0.93952 1.58519 1.03208 1.24528 1.47809 0.96953 0.89401 0.94752 0.93157 0.88423 0.93278 0.91563 0.90866 0.91939 0.91637 0.91396 0.90651 0.90603 0.90300 0.89216 0.97569 0.86974 0.84987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.43 37.16 0.31 -2.77 16 2 C 0.03 0.75 1.77 -92.92 -0.16 0.59 16 3 H 0.04 1.11 7.02 -51.93 -0.36 0.74 16 4 C -0.49 -14.18 8.33 -34.44 -0.29 -14.47 16 5 H 0.07 2.16 6.98 -52.49 -0.37 1.80 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.68 11.40 55.43 0.63 -25.05 16 8 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 9 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.51 11.71 6.45 -10.98 -0.07 11.64 16 13 O -0.50 -12.45 10.53 5.56 0.06 -12.39 16 14 N -0.61 -11.31 2.90 -160.58 -0.47 -11.77 16 15 C 0.11 1.78 5.49 -4.82 -0.03 1.76 16 16 C -0.13 -1.66 6.06 -26.75 -0.16 -1.82 16 17 C -0.10 -1.13 5.38 -26.69 -0.14 -1.28 16 18 C -0.11 -1.43 3.72 -89.88 -0.33 -1.76 16 19 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 20 C -0.14 -1.56 7.13 -25.69 -0.18 -1.75 16 21 C -0.15 -2.09 6.84 -26.08 -0.18 -2.27 16 22 C 0.17 2.74 1.36 -132.28 -0.18 2.56 16 23 C 0.10 1.64 5.27 -3.82 -0.02 1.62 16 24 N -0.81 -13.47 6.98 -10.37 -0.07 -13.54 16 25 H 0.01 0.24 6.50 -51.93 -0.34 -0.10 16 26 H 0.09 2.26 6.28 -51.93 -0.33 1.93 16 27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.10 1.73 4.35 -51.93 -0.23 1.50 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.74 7.20 -51.93 -0.37 0.37 16 35 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 36 H 0.07 0.79 7.80 -51.93 -0.41 0.39 16 37 H 0.08 1.12 5.91 -51.93 -0.31 0.81 16 38 H 0.08 1.16 7.63 -51.93 -0.40 0.77 16 39 H 0.09 1.76 6.26 -51.93 -0.32 1.44 16 40 H 0.01 0.09 7.39 -51.93 -0.38 -0.29 16 41 H 0.32 4.48 7.11 -39.29 -0.28 4.20 16 42 H 0.34 5.31 9.08 -39.29 -0.36 4.96 16 LS Contribution 308.84 15.07 4.65 4.65 Total: -1.00 -30.80 308.84 -8.28 -39.08 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -6.53 Total: 8.19 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -1.53 Total: -6.43 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 0.09 Total: -50.36 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.06 Total: -12.39 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.80 -8.28 -39.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342086466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.305 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds