Wall clock time and date at job start Mon Mar 30 2020 19:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46947 * 2 1 4 4 C 1.50697 * 109.47312 * 239.99587 * 2 1 3 5 5 H 1.08001 * 120.00045 * 240.00029 * 4 2 1 6 6 C 1.37876 * 120.00117 * 60.00128 * 4 2 1 7 7 N 1.31512 * 119.99677 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00116 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47355 * 90.00074 * 8 6 4 10 10 H 1.48504 * 109.47440 * 209.99650 * 8 6 4 11 11 H 1.48498 * 109.47115 * 329.99748 * 8 6 4 12 12 C 1.50701 * 109.47048 * 119.99540 * 2 1 3 13 13 O 1.21283 * 120.00051 * 97.42389 * 12 2 1 14 14 N 1.34782 * 119.99850 * 277.42926 * 12 2 1 15 15 C 1.45097 * 117.90086 * 4.84824 * 14 12 2 16 16 C 1.52944 * 110.22965 * 141.81792 * 15 14 12 17 17 C 1.53018 * 108.93185 * 56.53036 * 16 15 14 18 18 C 1.53058 * 109.41281 * 295.35314 * 17 16 15 19 19 H 1.08998 * 113.67884 * 277.47648 * 18 17 16 20 20 C 1.54150 * 111.68757 * 146.40254 * 18 17 16 21 21 C 1.53870 * 86.93653 * 271.97573 * 20 18 17 22 22 C 1.45093 * 118.47999 * 184.25434 * 14 12 2 23 23 C 1.52999 * 112.25952 * 335.79032 * 22 14 12 24 24 N 1.46905 * 109.47138 * 89.69029 * 23 22 14 25 25 H 1.08992 * 109.47333 * 293.34885 * 1 2 3 26 26 H 1.08997 * 109.46837 * 53.35331 * 1 2 3 27 27 H 1.09000 * 109.46797 * 173.34919 * 1 2 3 28 28 H 0.97003 * 120.00047 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.88818 * 21.16789 * 15 14 12 30 30 H 1.09002 * 108.49976 * 261.59068 * 15 14 12 31 31 H 1.09000 * 109.55632 * 296.69539 * 16 15 14 32 32 H 1.08997 * 109.64866 * 176.42290 * 16 15 14 33 33 H 1.09003 * 109.48008 * 175.36785 * 17 16 15 34 34 H 1.09003 * 109.49198 * 55.34724 * 17 16 15 35 35 H 1.08997 * 113.64104 * 26.49029 * 20 18 17 36 36 H 1.09004 * 113.63781 * 157.46327 * 20 18 17 37 37 H 1.09001 * 113.69130 * 219.46268 * 21 20 18 38 38 H 1.09006 * 113.68608 * 88.33800 * 21 20 18 39 39 H 1.09006 * 109.46779 * 329.69435 * 23 22 14 40 40 H 1.08991 * 109.47461 * 209.69398 * 23 22 14 41 41 H 1.00903 * 110.99503 * 67.09020 * 24 23 22 42 42 H 1.00896 * 110.99797 * 191.04354 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8294 -2.6034 8 14 2.3227 -1.1198 -4.0078 9 1 1.3451 -2.1618 -4.4122 10 1 2.4874 -0.1405 -5.1120 11 1 3.6310 -1.7567 -3.7117 12 6 2.0323 -0.7103 1.2305 13 8 2.3624 -1.8756 1.1658 14 7 2.1147 -0.0507 2.4030 15 6 1.6081 1.3080 2.4547 16 6 0.9098 1.5616 3.7915 17 6 1.8914 1.2679 4.9280 18 6 2.2509 -0.2199 4.9179 19 1 1.5172 -0.8509 5.4195 20 6 3.7052 -0.4576 5.3703 21 6 4.1072 -0.2685 3.8971 22 6 2.6900 -0.7374 3.5443 23 6 2.5816 -2.2585 3.4205 24 7 3.7712 -2.7799 2.7341 25 1 -0.3633 0.4073 0.9434 26 1 -0.3633 0.6134 -0.8245 27 1 -0.3633 -1.0208 -0.1190 28 1 0.7082 1.1606 -3.4844 29 1 0.9021 1.4717 1.6406 30 1 2.4481 1.9946 2.3490 31 1 0.0425 0.9073 3.8800 32 1 0.5891 2.6019 3.8460 33 1 1.4303 1.5240 5.8819 34 1 2.7953 1.8613 4.7903 35 1 4.0898 0.3190 6.0314 36 1 3.8867 -1.4642 5.7472 37 1 4.8896 -0.9512 3.5656 38 1 4.3054 0.7687 3.6269 39 1 1.6903 -2.5137 2.8473 40 1 2.5131 -2.7000 4.4146 41 1 4.5976 -2.6583 3.3002 42 1 3.6464 -3.7483 2.4797 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342086466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:54 Heat of formation + Delta-G solvation = -8.056988 kcal Electronic energy + Delta-G solvation = -22258.650332 eV Core-core repulsion = 19239.315937 eV Total energy + Delta-G solvation = -3019.334395 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.27649 -39.42742 -36.66477 -35.52654 -34.48302 -32.97744 -32.24986 -28.32814 -27.25645 -27.10098 -25.40400 -24.60930 -23.28611 -21.97926 -20.40757 -18.54750 -18.20799 -17.55628 -17.54490 -16.71061 -16.43806 -16.00615 -15.61956 -15.20282 -14.97136 -14.84809 -14.52939 -14.12802 -13.73777 -13.52621 -13.31630 -13.13698 -12.88787 -12.82113 -12.64265 -12.51941 -12.38177 -12.19843 -12.11676 -11.88878 -11.76791 -11.30424 -11.23838 -11.06381 -10.97531 -10.50769 -9.57063 -9.19196 -9.12179 -8.12530 -6.21059 1.39563 1.40143 1.52116 2.18813 2.37130 2.52746 3.17240 3.43537 3.60204 3.70321 3.89415 4.03922 4.14999 4.25332 4.28213 4.37574 4.50371 4.60952 4.66616 4.74873 4.75750 4.85014 4.87513 4.96547 4.99588 5.05655 5.09898 5.12205 5.14100 5.23536 5.36097 5.41223 5.50355 5.58398 5.75796 5.92894 6.15069 6.27417 6.50131 6.78882 6.82672 6.90479 7.44751 7.83853 8.94012 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026599 B = 0.006571 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.424749 B = 4260.094214 C = 4930.705593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.028 3.972 3 H 0.028 0.972 4 C -0.519 4.519 5 H 0.044 0.956 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.275 1.275 11 H -0.279 1.279 12 C 0.500 3.500 13 O -0.527 6.527 14 N -0.600 5.600 15 C 0.102 3.898 16 C -0.124 4.124 17 C -0.096 4.096 18 C -0.106 4.106 19 H 0.086 0.914 20 C -0.117 4.117 21 C -0.150 4.150 22 C 0.149 3.851 23 C 0.105 3.895 24 N -0.829 5.829 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.016 0.984 28 H 0.263 0.737 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.036 0.964 41 H 0.331 0.669 42 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.835 1.653 18.415 18.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.007 3.993 3 H 0.046 0.954 4 C -0.557 4.557 5 H 0.063 0.937 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.200 1.200 11 H -0.204 1.204 12 C 0.289 3.711 13 O -0.402 6.402 14 N -0.333 5.333 15 C -0.021 4.021 16 C -0.162 4.162 17 C -0.134 4.134 18 C -0.126 4.126 19 H 0.105 0.895 20 C -0.154 4.154 21 C -0.189 4.189 22 C 0.063 3.937 23 C -0.027 4.027 24 N -0.361 5.361 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.146 0.854 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.782 1.698 17.691 17.861 hybrid contribution 0.305 -1.087 -0.707 1.332 sum 2.087 0.611 16.984 17.123 Atomic orbital electron populations 1.21522 0.95878 0.99461 1.00180 1.18769 0.94502 0.95522 0.90496 0.95423 1.21262 1.31169 1.12111 0.91188 0.93726 1.25590 0.95367 0.95772 1.01367 1.69968 1.37576 1.23725 1.24094 0.85614 0.78572 0.78500 0.79284 1.20194 1.19982 1.20394 1.21521 0.76916 0.87520 0.85149 1.90592 1.47353 1.17327 1.84933 1.47205 1.62197 1.14580 1.09352 1.21474 0.98321 0.82286 1.00028 1.21742 0.98274 1.03161 0.92987 1.21383 0.99538 0.93299 0.99160 1.22870 0.98132 0.97966 0.93599 0.89539 1.22887 0.94600 1.02848 0.95106 1.23333 0.97277 1.01086 0.97203 1.21564 0.94421 0.92330 0.85419 1.21382 0.94635 0.92130 0.94505 1.58452 1.04077 1.24758 1.48830 0.93785 0.91365 0.96451 0.92763 0.90500 0.93035 0.91952 0.88339 0.88970 0.91281 0.89085 0.89442 0.91571 0.90917 0.93060 0.94653 0.85444 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.52 8.43 71.98 0.61 -4.91 16 2 C 0.03 1.50 1.77 -12.29 -0.02 1.48 16 3 H 0.03 1.52 7.02 -2.39 -0.02 1.50 16 4 C -0.52 -31.09 8.33 25.60 0.21 -30.87 16 5 H 0.04 2.85 6.98 -2.91 -0.02 2.83 16 6 C 0.02 1.02 5.30 84.65 0.45 1.47 16 7 N -0.91 -52.96 11.40 21.45 0.24 -52.72 16 8 Si 0.95 46.41 29.54 68.60 2.03 48.44 16 9 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 12 C 0.50 23.89 6.45 87.66 0.57 24.45 16 13 O -0.53 -27.35 10.53 -3.04 -0.03 -27.38 16 14 N -0.60 -22.29 2.90 -780.34 -2.27 -24.55 16 15 C 0.10 3.22 5.49 86.62 0.48 3.70 16 16 C -0.12 -2.76 6.06 30.58 0.19 -2.57 16 17 C -0.10 -1.80 5.38 30.62 0.16 -1.63 16 18 C -0.11 -2.30 3.72 -10.31 -0.04 -2.33 16 19 H 0.09 1.76 8.06 -2.39 -0.02 1.74 16 20 C -0.12 -2.18 7.13 31.27 0.22 -1.96 16 21 C -0.15 -3.99 6.84 31.02 0.21 -3.78 16 22 C 0.15 4.52 1.36 4.06 0.01 4.53 16 23 C 0.10 3.40 5.27 86.30 0.45 3.85 16 24 N -0.83 -27.79 6.98 -186.71 -1.30 -29.09 16 25 H 0.04 1.82 6.50 -2.39 -0.02 1.80 16 26 H 0.07 3.60 6.28 -2.39 -0.01 3.58 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.08 2.73 4.35 -2.39 -0.01 2.72 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.28 7.20 -2.39 -0.02 1.26 16 35 H 0.09 1.35 8.06 -2.39 -0.02 1.34 16 36 H 0.09 1.46 7.80 -2.38 -0.02 1.45 16 37 H 0.07 1.88 5.91 -2.39 -0.01 1.86 16 38 H 0.07 2.02 7.63 -2.38 -0.02 2.00 16 39 H 0.05 2.07 6.26 -2.38 -0.01 2.05 16 40 H 0.04 0.94 7.39 -2.39 -0.02 0.92 16 41 H 0.33 9.18 7.11 -89.69 -0.64 8.55 16 42 H 0.34 10.92 9.08 -89.70 -0.81 10.10 16 Total: -1.00 -68.84 308.84 1.75 -67.09 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -0.42 Total: 26.80 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 3.50 Total: -8.59 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -3.33 Total: -106.36 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.03 Total: -27.38 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -68.84 1.75 -67.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342086466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.034 kcal (2) G-P(sol) polarization free energy of solvation -68.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds