Wall clock time and date at job start Mon Mar 30 2020 19:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46461 * 2 1 4 4 C 1.50701 * 109.46861 * 240.00297 * 2 1 3 5 5 H 1.07997 * 119.99390 * 239.99719 * 4 2 1 6 6 C 1.37875 * 120.00153 * 60.00013 * 4 2 1 7 7 N 1.31510 * 119.99638 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99918 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47110 * 269.99908 * 8 6 4 10 10 H 1.48492 * 109.47543 * 30.00437 * 8 6 4 11 11 H 1.48503 * 109.46706 * 150.00638 * 8 6 4 12 12 C 1.50691 * 109.46971 * 119.99843 * 2 1 3 13 13 O 1.21284 * 120.00260 * 33.33705 * 12 2 1 14 14 N 1.34783 * 120.00091 * 213.33025 * 12 2 1 15 15 C 1.48405 * 123.16220 * 3.98473 * 14 12 2 16 16 C 1.52040 * 112.13393 * 231.77528 * 15 14 12 17 17 C 1.54090 * 112.72764 * 313.50136 * 16 15 14 18 18 C 1.51199 * 106.19354 * 55.27191 * 17 16 15 19 19 H 1.08998 * 111.93808 * 56.16138 * 18 17 16 20 20 C 1.50009 * 126.18000 * 198.56343 * 18 17 16 21 21 C 1.55773 * 83.86545 * 141.49064 * 20 18 17 22 22 C 1.45381 * 123.16896 * 184.27361 * 14 12 2 23 23 C 1.53001 * 112.09299 * 239.77076 * 22 14 12 24 24 N 1.46892 * 109.47276 * 57.21256 * 23 22 14 25 25 H 1.09006 * 109.47136 * 174.57918 * 1 2 3 26 26 H 1.08997 * 109.47291 * 294.57958 * 1 2 3 27 27 H 1.08997 * 109.47346 * 54.57843 * 1 2 3 28 28 H 0.97007 * 119.99751 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.00233 * 352.44958 * 15 14 12 30 30 H 1.09000 * 109.00016 * 111.22147 * 15 14 12 31 31 H 1.08996 * 108.94348 * 192.57309 * 16 15 14 32 32 H 1.09000 * 108.59763 * 74.19636 * 16 15 14 33 33 H 1.08994 * 110.10265 * 296.10258 * 17 16 15 34 34 H 1.08996 * 110.19516 * 174.49171 * 17 16 15 35 35 H 1.08997 * 114.12529 * 255.21909 * 20 18 17 36 36 H 1.09002 * 114.12169 * 27.77131 * 20 18 17 37 37 H 1.09007 * 114.08386 * 209.19291 * 21 20 18 38 38 H 1.09004 * 114.08527 * 76.77305 * 21 20 18 39 39 H 1.08997 * 109.46752 * 177.21544 * 23 22 14 40 40 H 1.09002 * 109.47113 * 297.21080 * 23 22 14 41 41 H 1.00902 * 111.00505 * 56.04387 * 24 23 22 42 42 H 1.00904 * 111.00204 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 2.1380 -0.8589 -3.5565 8 14 0.6247 1.2791 -2.6540 9 1 -0.8029 0.8727 -2.6997 10 1 0.8470 2.1766 -1.4921 11 1 0.9758 1.9951 -3.9068 12 6 2.0323 -0.7103 1.2304 13 8 1.4071 -1.6423 1.6903 14 7 3.1764 -0.3101 1.8198 15 6 3.9512 0.8727 1.3690 16 6 5.4165 0.5420 1.1340 17 6 6.0330 -0.2797 2.2825 18 6 5.1596 -1.5037 2.4413 19 1 5.0741 -2.0663 1.5116 20 6 5.0991 -2.3985 3.6438 21 6 3.5738 -2.4379 3.3301 22 6 3.7709 -0.9998 2.9532 23 6 3.8968 -0.0916 4.1780 24 7 2.5726 0.4331 4.5368 25 1 -0.3634 -1.0231 -0.0971 26 1 -0.3634 0.4274 0.9345 27 1 -0.3634 0.5956 -0.8374 28 1 1.9039 -0.5273 -4.4376 29 1 3.5200 1.2465 0.4404 30 1 3.8840 1.6515 2.1286 31 1 5.9760 1.4712 1.0262 32 1 5.5001 -0.0281 0.2088 33 1 6.0315 0.3035 3.2033 34 1 7.0508 -0.5761 2.0290 35 1 5.6057 -3.3548 3.5134 36 1 5.3484 -1.9019 4.5815 37 1 2.9430 -2.5855 4.2068 38 1 3.3082 -3.0846 2.4938 39 1 4.3000 -0.6630 5.0140 40 1 4.5661 0.7375 3.9483 41 1 1.9160 -0.3172 4.6917 42 1 2.6291 1.0368 5.3434 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342086468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:59 Heat of formation + Delta-G solvation = 19.281801 kcal Electronic energy + Delta-G solvation = -22322.299215 eV Core-core repulsion = 19304.150319 eV Total energy + Delta-G solvation = -3018.148896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.38426 -38.00139 -34.97149 -33.74221 -33.61972 -31.96291 -31.03455 -27.14893 -26.10587 -25.03831 -24.26160 -23.55874 -21.67822 -20.61636 -18.81936 -17.66251 -16.81100 -16.35842 -16.03638 -15.91690 -14.90963 -14.37920 -14.16018 -13.80474 -13.66567 -13.24987 -13.14287 -12.95585 -12.65665 -12.44445 -12.02134 -11.88683 -11.68889 -11.59306 -11.30177 -11.11694 -10.81168 -10.72501 -10.67916 -10.31557 -10.22661 -9.96082 -9.69976 -9.58047 -9.13645 -8.61284 -8.60018 -8.32918 -7.70756 -6.11493 -4.12453 3.27497 3.35710 3.38099 3.62182 3.79367 4.26185 4.37104 4.70021 4.79667 4.85354 4.91433 5.18231 5.20877 5.29895 5.35150 5.45615 5.57817 5.63549 5.79799 5.85303 5.91245 5.92291 6.02232 6.13145 6.22609 6.24620 6.27840 6.43281 6.48169 6.49017 6.60959 6.63936 6.68593 6.92754 7.15699 7.27747 7.40893 7.50849 7.62032 8.30571 8.47377 8.89850 9.29072 9.48045 11.01001 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024318 B = 0.007137 C = 0.006686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.137545 B = 3922.225061 C = 4186.688376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.004 4.004 3 H 0.043 0.957 4 C -0.504 4.504 5 H 0.074 0.926 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.888 3.112 9 H -0.277 1.277 10 H -0.266 1.266 11 H -0.296 1.296 12 C 0.552 3.448 13 O -0.559 6.559 14 N -0.584 5.584 15 C 0.117 3.883 16 C -0.133 4.133 17 C -0.102 4.102 18 C -0.135 4.135 19 H 0.094 0.906 20 C -0.135 4.135 21 C -0.101 4.101 22 C 0.134 3.866 23 C 0.070 3.930 24 N -0.840 5.840 25 H 0.062 0.938 26 H 0.031 0.969 27 H 0.039 0.961 28 H 0.265 0.735 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.035 0.965 40 H 0.079 0.921 41 H 0.343 0.657 42 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.364 3.715 15.017 17.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.026 4.026 3 H 0.061 0.939 4 C -0.542 4.542 5 H 0.092 0.908 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.718 3.282 9 H -0.204 1.204 10 H -0.191 1.191 11 H -0.224 1.224 12 C 0.344 3.656 13 O -0.437 6.437 14 N -0.316 5.316 15 C -0.006 4.006 16 C -0.171 4.171 17 C -0.140 4.140 18 C -0.155 4.155 19 H 0.112 0.888 20 C -0.173 4.173 21 C -0.139 4.139 22 C 0.047 3.953 23 C -0.062 4.062 24 N -0.370 5.370 25 H 0.081 0.919 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.053 0.947 40 H 0.097 0.903 41 H 0.156 0.844 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.986 3.571 14.281 16.294 hybrid contribution -0.423 0.333 0.515 0.745 sum 6.563 3.904 14.796 16.650 Atomic orbital electron populations 1.21935 0.97051 1.01790 0.98304 1.19348 0.93612 0.96976 0.92650 0.93932 1.20556 1.32518 1.13609 0.87538 0.90768 1.24920 0.95469 0.96715 0.95570 1.69880 1.45262 1.40159 0.97936 0.86837 0.80937 0.83549 0.76855 1.20413 1.19093 1.22395 1.20944 0.78052 0.83063 0.83573 1.90524 1.57021 1.30408 1.65795 1.47771 1.24215 1.30095 1.29528 1.21519 0.90981 0.87180 1.00900 1.21774 0.95613 1.00387 0.99340 1.21308 0.98400 0.95583 0.98668 1.22757 0.97200 0.96656 0.98845 0.88781 1.22760 0.96822 0.99777 0.97910 1.22704 0.94772 0.94810 1.01642 1.21304 0.93923 0.92298 0.87786 1.22114 0.91341 0.97761 0.94977 1.58452 1.09302 1.25153 1.44070 0.91866 0.94943 0.94228 0.92470 0.88751 0.92540 0.91211 0.90963 0.91770 0.92087 0.91247 0.89617 0.91868 0.88561 0.94707 0.90331 0.84419 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.15 37.16 0.30 -2.85 16 2 C 0.00 -0.11 1.67 -92.93 -0.16 -0.26 16 3 H 0.04 1.00 5.10 -51.93 -0.26 0.74 16 4 C -0.50 -14.21 9.13 -34.44 -0.31 -14.53 16 5 H 0.07 2.33 7.98 -52.49 -0.42 1.91 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -27.06 13.96 55.43 0.77 -26.28 16 8 Si 0.89 21.74 24.32 -169.99 -4.13 17.61 16 9 H -0.28 -6.73 6.92 56.52 0.39 -6.34 16 10 H -0.27 -6.14 6.53 56.52 0.37 -5.77 16 11 H -0.30 -7.20 7.11 56.52 0.40 -6.79 16 12 C 0.55 12.70 6.71 -10.99 -0.07 12.63 16 13 O -0.56 -14.03 15.19 5.55 0.08 -13.95 16 14 N -0.58 -10.89 2.60 -162.64 -0.42 -11.31 16 15 C 0.12 1.91 5.66 -3.48 -0.02 1.89 16 16 C -0.13 -1.85 5.88 -26.65 -0.16 -2.00 16 17 C -0.10 -1.24 5.88 -27.07 -0.16 -1.40 16 18 C -0.13 -1.89 3.11 -95.82 -0.30 -2.19 16 19 H 0.09 1.59 8.04 -51.93 -0.42 1.17 16 20 C -0.13 -1.61 7.70 -30.63 -0.24 -1.84 16 21 C -0.10 -1.54 6.29 -31.37 -0.20 -1.74 16 22 C 0.13 2.06 1.15 -136.02 -0.16 1.91 16 23 C 0.07 0.86 4.92 -3.83 -0.02 0.84 16 24 N -0.84 -10.75 9.48 -10.37 -0.10 -10.85 16 25 H 0.06 1.56 8.03 -51.93 -0.42 1.14 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.93 3.43 -51.93 -0.18 0.75 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.09 1.72 5.67 -51.93 -0.29 1.43 16 30 H 0.06 0.83 7.31 -51.93 -0.38 0.45 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.69 5.78 -51.93 -0.30 0.39 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.86 6.07 -51.93 -0.32 0.55 16 37 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 38 H 0.10 1.75 7.67 -51.93 -0.40 1.35 16 39 H 0.04 0.37 6.00 -51.93 -0.31 0.06 16 40 H 0.08 0.94 5.16 -51.93 -0.27 0.67 16 41 H 0.34 4.64 8.99 -39.29 -0.35 4.29 16 42 H 0.34 3.34 9.08 -39.29 -0.36 2.98 16 LS Contribution 309.26 15.07 4.66 4.66 Total: -1.00 -31.91 309.26 -7.10 -39.01 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.39 Total: 8.60 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -1.58 Total: -7.48 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.25 Total: -48.44 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.08 Total: -13.95 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.13 Total: 17.61 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.91 -7.10 -39.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342086468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.293 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds