Wall clock time and date at job start Mon Mar 30 2020 19:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46461 * 2 1 4 4 C 1.50701 * 109.46861 * 240.00297 * 2 1 3 5 5 H 1.07997 * 119.99390 * 239.99719 * 4 2 1 6 6 C 1.37875 * 120.00153 * 60.00013 * 4 2 1 7 7 N 1.31510 * 119.99638 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99918 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47110 * 269.99908 * 8 6 4 10 10 H 1.48492 * 109.47543 * 30.00437 * 8 6 4 11 11 H 1.48503 * 109.46706 * 150.00638 * 8 6 4 12 12 C 1.50691 * 109.46971 * 119.99843 * 2 1 3 13 13 O 1.21284 * 120.00260 * 33.33705 * 12 2 1 14 14 N 1.34783 * 120.00091 * 213.33025 * 12 2 1 15 15 C 1.48405 * 123.16220 * 3.98473 * 14 12 2 16 16 C 1.52040 * 112.13393 * 231.77528 * 15 14 12 17 17 C 1.54090 * 112.72764 * 313.50136 * 16 15 14 18 18 C 1.51199 * 106.19354 * 55.27191 * 17 16 15 19 19 H 1.08998 * 111.93808 * 56.16138 * 18 17 16 20 20 C 1.50009 * 126.18000 * 198.56343 * 18 17 16 21 21 C 1.55773 * 83.86545 * 141.49064 * 20 18 17 22 22 C 1.45381 * 123.16896 * 184.27361 * 14 12 2 23 23 C 1.53001 * 112.09299 * 239.77076 * 22 14 12 24 24 N 1.46892 * 109.47276 * 57.21256 * 23 22 14 25 25 H 1.09006 * 109.47136 * 174.57918 * 1 2 3 26 26 H 1.08997 * 109.47291 * 294.57958 * 1 2 3 27 27 H 1.08997 * 109.47346 * 54.57843 * 1 2 3 28 28 H 0.97007 * 119.99751 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.00233 * 352.44958 * 15 14 12 30 30 H 1.09000 * 109.00016 * 111.22147 * 15 14 12 31 31 H 1.08996 * 108.94348 * 192.57309 * 16 15 14 32 32 H 1.09000 * 108.59763 * 74.19636 * 16 15 14 33 33 H 1.08994 * 110.10265 * 296.10258 * 17 16 15 34 34 H 1.08996 * 110.19516 * 174.49171 * 17 16 15 35 35 H 1.08997 * 114.12529 * 255.21909 * 20 18 17 36 36 H 1.09002 * 114.12169 * 27.77131 * 20 18 17 37 37 H 1.09007 * 114.08386 * 209.19291 * 21 20 18 38 38 H 1.09004 * 114.08527 * 76.77305 * 21 20 18 39 39 H 1.08997 * 109.46752 * 177.21544 * 23 22 14 40 40 H 1.09002 * 109.47113 * 297.21080 * 23 22 14 41 41 H 1.00902 * 111.00505 * 56.04387 * 24 23 22 42 42 H 1.00904 * 111.00204 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 2.1380 -0.8589 -3.5565 8 14 0.6247 1.2791 -2.6540 9 1 -0.8029 0.8727 -2.6997 10 1 0.8470 2.1766 -1.4921 11 1 0.9758 1.9951 -3.9068 12 6 2.0323 -0.7103 1.2304 13 8 1.4071 -1.6423 1.6903 14 7 3.1764 -0.3101 1.8198 15 6 3.9512 0.8727 1.3690 16 6 5.4165 0.5420 1.1340 17 6 6.0330 -0.2797 2.2825 18 6 5.1596 -1.5037 2.4413 19 1 5.0741 -2.0663 1.5116 20 6 5.0991 -2.3985 3.6438 21 6 3.5738 -2.4379 3.3301 22 6 3.7709 -0.9998 2.9532 23 6 3.8968 -0.0916 4.1780 24 7 2.5726 0.4331 4.5368 25 1 -0.3634 -1.0231 -0.0971 26 1 -0.3634 0.4274 0.9345 27 1 -0.3634 0.5956 -0.8374 28 1 1.9039 -0.5273 -4.4376 29 1 3.5200 1.2465 0.4404 30 1 3.8840 1.6515 2.1286 31 1 5.9760 1.4712 1.0262 32 1 5.5001 -0.0281 0.2088 33 1 6.0315 0.3035 3.2033 34 1 7.0508 -0.5761 2.0290 35 1 5.6057 -3.3548 3.5134 36 1 5.3484 -1.9019 4.5815 37 1 2.9430 -2.5855 4.2068 38 1 3.3082 -3.0846 2.4938 39 1 4.3000 -0.6630 5.0140 40 1 4.5661 0.7375 3.9483 41 1 1.9160 -0.3172 4.6917 42 1 2.6291 1.0368 5.3434 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342086468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:58 Heat of formation + Delta-G solvation = -4.730724 kcal Electronic energy + Delta-G solvation = -22323.340476 eV Core-core repulsion = 19304.150319 eV Total energy + Delta-G solvation = -3019.190157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.61184 -39.71714 -36.35291 -35.64841 -34.73401 -33.37319 -33.04806 -28.35734 -27.46569 -27.00178 -25.43618 -25.09078 -23.15853 -21.79783 -20.30251 -19.07473 -18.85410 -17.93648 -17.44615 -17.09182 -16.62861 -15.79196 -15.35303 -15.27839 -15.04601 -14.76386 -14.66270 -14.32610 -14.18668 -13.93713 -13.67098 -13.41145 -13.01961 -12.97667 -12.84214 -12.70706 -12.44662 -12.23807 -12.05062 -11.85247 -11.50440 -11.43433 -11.37068 -11.22605 -10.93129 -10.80087 -10.13738 -9.47012 -9.12111 -8.35014 -6.42324 1.32385 1.34629 1.46949 2.00921 2.22818 2.28933 2.99251 3.09972 3.58698 3.64937 3.77943 3.88625 4.04591 4.08378 4.17997 4.28836 4.42617 4.45146 4.50376 4.56906 4.64504 4.73109 4.76812 4.83424 4.87011 4.91367 4.97445 5.04024 5.06406 5.10138 5.19724 5.30290 5.39252 5.41290 5.50290 5.55816 5.90302 6.14344 6.27162 6.56400 6.65918 6.76757 7.21105 7.56250 8.81616 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024318 B = 0.007137 C = 0.006686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.137545 B = 3922.225061 C = 4186.688376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.006 4.006 3 H 0.059 0.941 4 C -0.508 4.508 5 H 0.019 0.981 6 C 0.022 3.978 7 N -0.942 5.942 8 Si 0.951 3.049 9 H -0.270 1.270 10 H -0.237 1.237 11 H -0.290 1.290 12 C 0.540 3.460 13 O -0.594 6.594 14 N -0.580 5.580 15 C 0.110 3.890 16 C -0.130 4.130 17 C -0.093 4.093 18 C -0.132 4.132 19 H 0.047 0.953 20 C -0.106 4.106 21 C -0.116 4.116 22 C 0.115 3.885 23 C 0.078 3.922 24 N -0.855 5.855 25 H 0.040 0.960 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.270 0.730 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.035 0.965 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.337 0.663 42 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.441 6.539 17.812 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.028 4.028 3 H 0.077 0.923 4 C -0.546 4.546 5 H 0.037 0.963 6 C -0.177 4.177 7 N -0.582 5.582 8 Si 0.777 3.223 9 H -0.196 1.196 10 H -0.161 1.161 11 H -0.217 1.217 12 C 0.331 3.669 13 O -0.475 6.475 14 N -0.310 5.310 15 C -0.011 4.011 16 C -0.168 4.168 17 C -0.130 4.130 18 C -0.152 4.152 19 H 0.066 0.934 20 C -0.144 4.144 21 C -0.154 4.154 22 C 0.029 3.971 23 C -0.053 4.053 24 N -0.386 5.386 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.121 0.879 32 H 0.054 0.946 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.141 0.859 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.112 0.888 41 H 0.149 0.851 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 8.115 6.422 17.116 20.002 hybrid contribution -0.697 -0.656 -0.378 1.029 sum 7.418 5.766 16.738 19.195 Atomic orbital electron populations 1.21854 0.96257 1.00777 0.99805 1.19298 0.94330 0.97380 0.91752 0.92279 1.20589 1.31931 1.12207 0.89875 0.96284 1.25814 0.96808 1.00257 0.94786 1.70029 1.47027 1.42384 0.98716 0.85803 0.78847 0.79623 0.78039 1.19611 1.16082 1.21679 1.20733 0.79562 0.82935 0.83660 1.90493 1.58620 1.31668 1.66749 1.47801 1.22716 1.30450 1.30034 1.21726 0.91903 0.86908 1.00605 1.21776 0.94546 1.01842 0.98684 1.21306 0.98392 0.94205 0.99080 1.22668 0.97126 0.97450 0.97927 0.93398 1.22711 0.93424 1.00045 0.98171 1.22682 0.97933 0.94434 1.00378 1.21883 0.93987 0.92856 0.88361 1.22090 0.91628 0.97779 0.93794 1.58429 1.09382 1.25384 1.45367 0.94070 0.92453 0.93672 0.92126 0.91278 0.89574 0.87866 0.94599 0.88584 0.90377 0.90310 0.85948 0.91093 0.93218 0.91797 0.88823 0.85125 0.83279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.09 8.15 71.98 0.59 -5.50 16 2 C -0.01 -0.31 1.67 -12.29 -0.02 -0.33 16 3 H 0.06 2.74 5.10 -2.39 -0.01 2.72 16 4 C -0.51 -30.19 9.13 25.60 0.23 -29.96 16 5 H 0.02 1.29 7.98 -2.91 -0.02 1.27 16 6 C 0.02 1.26 5.45 84.65 0.46 1.72 16 7 N -0.94 -59.36 13.96 21.45 0.30 -59.06 16 8 Si 0.95 44.55 24.32 68.60 1.67 46.22 16 9 H -0.27 -12.32 6.92 99.48 0.69 -11.63 16 10 H -0.24 -9.98 6.53 99.48 0.65 -9.33 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 12 C 0.54 25.71 6.71 87.65 0.59 26.29 16 13 O -0.59 -31.26 15.19 -3.04 -0.05 -31.31 16 14 N -0.58 -21.68 2.60 -786.86 -2.05 -23.73 16 15 C 0.11 3.46 5.66 85.70 0.48 3.95 16 16 C -0.13 -3.41 5.88 30.65 0.18 -3.23 16 17 C -0.09 -1.95 5.88 30.38 0.18 -1.77 16 18 C -0.13 -3.56 3.11 -14.16 -0.04 -3.61 16 19 H 0.05 1.72 8.04 -2.39 -0.02 1.70 16 20 C -0.11 -2.26 7.70 28.07 0.22 -2.05 16 21 C -0.12 -3.56 6.29 27.59 0.17 -3.38 16 22 C 0.12 3.41 1.15 1.48 0.00 3.41 16 23 C 0.08 1.62 4.92 86.31 0.42 2.05 16 24 N -0.85 -19.17 9.48 -186.73 -1.77 -20.94 16 25 H 0.04 2.07 8.03 -2.38 -0.02 2.05 16 26 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.04 2.04 3.43 -2.39 -0.01 2.03 16 28 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 29 H 0.07 2.50 5.67 -2.39 -0.01 2.49 16 30 H 0.09 2.23 7.31 -2.39 -0.02 2.21 16 31 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.10 1.48 5.78 -2.39 -0.01 1.47 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.12 1.79 6.07 -2.39 -0.01 1.78 16 37 H 0.07 2.00 8.13 -2.38 -0.02 1.98 16 38 H 0.05 1.96 7.67 -2.38 -0.02 1.94 16 39 H 0.06 1.00 6.00 -2.39 -0.01 0.99 16 40 H 0.09 1.69 5.16 -2.39 -0.01 1.68 16 41 H 0.34 8.44 8.99 -89.69 -0.81 7.63 16 42 H 0.35 5.66 9.08 -89.69 -0.81 4.84 16 Total: -1.00 -75.31 309.26 0.92 -74.39 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -0.65 Total: 26.82 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 3.46 Total: -12.41 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -3.52 Total: -103.72 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.05 Total: -31.31 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.67 Total: 46.22 kcal Total: -75.31 0.92 -74.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342086468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.664 kcal (2) G-P(sol) polarization free energy of solvation -75.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds