Wall clock time and date at job start Mon Mar 30 2020 19:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47241 * 2 1 4 4 C 1.50697 * 109.46935 * 239.99596 * 2 1 3 5 5 H 1.07998 * 120.00084 * 240.00155 * 4 2 1 6 6 C 1.37874 * 120.00049 * 60.00477 * 4 2 1 7 7 N 1.31518 * 119.99898 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00206 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47305 * 89.99755 * 8 6 4 10 10 H 1.48499 * 109.47023 * 209.99692 * 8 6 4 11 11 H 1.48498 * 109.47148 * 329.99686 * 8 6 4 12 12 C 1.50703 * 109.46863 * 120.00039 * 2 1 3 13 13 O 1.21285 * 120.00127 * 95.02582 * 12 2 1 14 14 N 1.34780 * 119.99638 * 275.02497 * 12 2 1 15 15 C 1.47173 * 121.04256 * 354.94814 * 14 12 2 16 16 C 1.53070 * 109.29022 * 126.73502 * 15 14 12 17 17 C 1.53229 * 109.88580 * 53.37355 * 16 15 14 18 18 C 1.52700 * 108.99593 * 299.59427 * 17 16 15 19 19 H 1.09000 * 109.36968 * 303.24779 * 18 17 16 20 20 C 1.52719 * 111.22995 * 182.33381 * 18 17 16 21 21 N 1.47069 * 108.88697 * 179.54131 * 20 18 17 22 22 C 1.46713 * 111.82012 * 61.03846 * 21 20 18 23 23 C 1.53253 * 109.98343 * 299.69241 * 22 21 20 24 24 C 1.46608 * 121.03744 * 174.96582 * 14 12 2 25 25 H 1.09000 * 109.52564 * 115.77159 * 24 14 12 26 26 H 1.08997 * 109.46782 * 64.98645 * 1 2 3 27 27 H 1.09002 * 109.47084 * 184.98625 * 1 2 3 28 28 H 1.09001 * 109.46970 * 304.98734 * 1 2 3 29 29 H 0.97003 * 119.99701 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.50275 * 6.78561 * 15 14 12 31 31 H 1.09001 * 109.49729 * 246.67926 * 15 14 12 32 32 H 1.09000 * 109.40140 * 293.24025 * 16 15 14 33 33 H 1.09003 * 109.32929 * 173.45360 * 16 15 14 34 34 H 1.09002 * 109.55109 * 179.74180 * 17 16 15 35 35 H 1.09000 * 109.63093 * 59.49191 * 17 16 15 36 36 H 1.09000 * 109.56880 * 59.71877 * 20 18 17 37 37 H 1.09001 * 109.66529 * 299.42116 * 20 18 17 38 38 H 1.00906 * 110.99555 * 185.58982 * 21 20 18 39 39 H 1.09003 * 109.36980 * 59.81991 * 22 21 20 40 40 H 1.09003 * 109.36994 * 179.56635 * 22 21 20 41 41 H 1.09001 * 109.60436 * 178.22686 * 23 22 21 42 42 H 1.08995 * 109.60524 * 298.71954 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3448 -2.1618 -4.4123 10 1 2.4873 -0.1404 -5.1120 11 1 3.6309 -1.7568 -3.7119 12 6 2.0324 -0.7104 1.2305 13 8 2.3212 -1.8871 1.1760 14 7 2.1605 -0.0381 2.3916 15 6 1.9226 1.4127 2.4588 16 6 0.9040 1.7074 3.5627 17 6 1.3644 1.0736 4.8795 18 6 1.4766 -0.4376 4.6912 19 1 0.5183 -0.8319 4.3531 20 6 1.8780 -1.1288 5.9926 21 7 1.9600 -2.5780 5.7563 22 6 2.9689 -2.9093 4.7440 23 6 2.6153 -2.2377 3.4126 24 6 2.5418 -0.7292 3.6271 25 1 3.5085 -0.3589 3.9682 26 1 -0.3633 0.4345 -0.9313 27 1 -0.3633 -1.0238 0.0893 28 1 -0.3633 0.5893 0.8420 29 1 0.7083 1.1607 -3.4844 30 1 1.5341 1.7624 1.5023 31 1 2.8587 1.9250 2.6811 32 1 -0.0647 1.2945 3.2812 33 1 0.8141 2.7860 3.6920 34 1 0.6378 1.2906 5.6625 35 1 2.3362 1.4791 5.1611 36 1 1.1305 -0.9256 6.7595 37 1 2.8485 -0.7570 6.3211 38 1 2.1342 -3.0754 6.6168 39 1 3.9452 -2.5579 5.0780 40 1 3.0016 -3.9901 4.6062 41 1 3.3849 -2.4619 2.6740 42 1 1.6507 -2.6052 3.0624 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344470952.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:27:31 Heat of formation + Delta-G solvation = -55.790754 kcal Electronic energy + Delta-G solvation = -21896.745923 eV Core-core repulsion = 18875.341637 eV Total energy + Delta-G solvation = -3021.404286 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.70992 -39.24371 -37.16421 -35.84105 -34.03042 -33.01564 -31.65967 -30.91503 -27.28637 -26.47814 -25.41469 -23.99810 -23.51388 -21.57215 -21.07962 -19.72355 -18.35415 -17.55847 -17.37962 -16.92526 -16.27717 -16.24384 -15.49527 -15.31748 -15.12040 -14.73086 -14.49919 -14.41096 -13.98916 -13.71512 -13.59978 -13.30579 -13.06379 -12.87434 -12.64130 -12.49775 -12.38686 -12.24987 -12.13090 -12.02292 -11.90726 -11.70519 -11.53391 -11.16306 -11.00799 -10.53656 -9.78789 -9.42027 -9.31205 -8.16037 -6.26814 1.39057 1.40350 1.51339 1.94846 2.19316 2.45499 3.12834 3.25343 3.65171 3.78243 3.85868 4.09112 4.16120 4.21377 4.27806 4.34417 4.43807 4.45122 4.63360 4.65313 4.76362 4.78169 4.84763 4.90063 4.92791 4.99164 5.02433 5.06563 5.11544 5.22314 5.28877 5.38237 5.44760 5.51832 5.69355 5.80746 5.95858 6.07476 6.20314 6.56531 6.64561 6.80061 7.38740 7.56162 8.89504 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028268 B = 0.005858 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.291046 B = 4778.902416 C = 5490.508274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.028 3.972 3 H 0.042 0.958 4 C -0.526 4.526 5 H 0.043 0.957 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.272 1.272 11 H -0.278 1.278 12 C 0.520 3.480 13 O -0.576 6.576 14 N -0.617 5.617 15 C 0.098 3.902 16 C -0.127 4.127 17 C -0.103 4.103 18 C -0.093 4.093 19 H 0.052 0.948 20 C 0.073 3.927 21 N -0.705 5.705 22 C 0.064 3.936 23 C -0.097 4.097 24 C 0.144 3.856 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.013 0.987 28 H 0.041 0.959 29 H 0.266 0.734 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.045 0.955 38 H 0.356 0.644 39 H 0.039 0.961 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 2.835 18.756 19.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.007 3.993 3 H 0.059 0.941 4 C -0.565 4.565 5 H 0.061 0.939 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.781 3.219 9 H -0.203 1.203 10 H -0.197 1.197 11 H -0.203 1.203 12 C 0.311 3.689 13 O -0.456 6.456 14 N -0.350 5.350 15 C -0.024 4.024 16 C -0.166 4.166 17 C -0.141 4.141 18 C -0.113 4.113 19 H 0.070 0.930 20 C -0.056 4.056 21 N -0.338 5.338 22 C -0.066 4.066 23 C -0.135 4.135 24 C 0.041 3.959 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.033 0.967 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.063 0.937 38 H 0.176 0.824 39 H 0.058 0.942 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.083 2.338 18.134 18.316 hybrid contribution 0.991 -0.497 -0.908 1.433 sum 2.073 1.841 17.226 17.448 Atomic orbital electron populations 1.21485 0.95690 0.98324 1.01756 1.18810 0.94680 0.96060 0.89718 0.94067 1.21227 1.31695 1.12323 0.91233 0.93907 1.25580 0.95193 0.95724 1.01338 1.69937 1.37078 1.23511 1.24342 0.85598 0.78589 0.78533 0.79169 1.20260 1.19684 1.20293 1.21553 0.75374 0.86965 0.84987 1.90525 1.51408 1.18325 1.85308 1.48317 1.69363 1.09605 1.07730 1.21980 1.00201 0.79095 1.01094 1.21893 0.97808 1.02496 0.94364 1.21469 1.02932 0.92403 0.97307 1.21515 0.97888 0.97011 0.94868 0.92968 1.21877 1.00967 0.86758 0.96013 1.59997 1.51341 1.08651 1.13788 1.21966 0.92822 1.00318 0.91479 1.21727 1.01750 0.93994 0.96047 1.21246 0.97581 0.92638 0.84407 0.91276 0.90661 0.96749 0.93995 0.92514 0.90339 0.90319 0.92899 0.87949 0.89274 0.90362 0.88495 0.93681 0.82380 0.94242 0.90511 0.92224 0.94204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.66 8.94 71.98 0.64 -5.01 16 2 C 0.03 1.48 1.82 -12.28 -0.02 1.46 16 3 H 0.04 2.17 6.29 -2.39 -0.02 2.15 16 4 C -0.53 -31.18 8.33 25.60 0.21 -30.96 16 5 H 0.04 2.70 7.03 -2.91 -0.02 2.68 16 6 C 0.02 1.18 5.29 84.65 0.45 1.63 16 7 N -0.91 -51.57 11.29 21.45 0.24 -51.33 16 8 Si 0.96 45.52 29.54 68.60 2.03 47.55 16 9 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 12 C 0.52 25.16 6.70 87.66 0.59 25.75 16 13 O -0.58 -31.25 11.62 -3.05 -0.04 -31.28 16 14 N -0.62 -23.05 2.97 -795.90 -2.36 -25.42 16 15 C 0.10 2.93 6.27 86.27 0.54 3.47 16 16 C -0.13 -2.84 6.05 30.69 0.19 -2.66 16 17 C -0.10 -1.93 5.31 30.57 0.16 -1.76 16 18 C -0.09 -2.29 2.12 -10.87 -0.02 -2.32 16 19 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 20 C 0.07 1.39 5.98 86.18 0.52 1.91 16 21 N -0.70 -15.45 6.82 -513.96 -3.50 -18.95 16 22 C 0.06 1.65 6.56 86.42 0.57 2.22 16 23 C -0.10 -3.46 3.82 30.53 0.12 -3.35 16 24 C 0.14 4.56 2.67 44.94 0.12 4.68 16 25 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.07 4.02 5.95 -2.39 -0.01 4.00 16 27 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.04 1.76 7.92 -2.39 -0.02 1.74 16 29 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.08 2.67 5.26 -2.39 -0.01 2.66 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.36 5.74 8.90 -89.69 -0.80 4.94 16 39 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.06 2.50 6.49 -2.39 -0.02 2.48 16 42 H 0.04 1.71 7.27 -2.39 -0.02 1.69 16 Total: -1.00 -68.91 314.52 0.63 -68.28 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.21 Total: 16.10 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 4.05 Total: -4.95 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -5.62 Total: -95.70 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.04 Total: -31.28 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -68.91 0.63 -68.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344470952.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.492 kcal (2) G-P(sol) polarization free energy of solvation -68.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds