Wall clock time and date at job start Mon Mar 30 2020 19:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47053 * 2 1 4 4 C 1.50702 * 109.46864 * 240.00475 * 2 1 3 5 5 H 1.08006 * 119.99849 * 239.99260 * 4 2 1 6 6 C 1.37879 * 120.00323 * 59.72378 * 4 2 1 7 7 N 1.31511 * 120.00022 * 0.27362 * 6 4 2 8 8 Si 1.86801 * 119.99915 * 180.27638 * 6 4 2 9 9 H 1.48499 * 109.47407 * 59.99645 * 8 6 4 10 10 H 1.48502 * 109.46908 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47212 * 299.99395 * 8 6 4 12 12 C 1.50692 * 109.47315 * 120.00217 * 2 1 3 13 13 O 1.21279 * 120.00093 * 22.61370 * 12 2 1 14 14 N 1.34782 * 120.00212 * 202.60739 * 12 2 1 15 15 C 1.47172 * 121.03118 * 4.97393 * 14 12 2 16 16 C 1.53078 * 109.28567 * 233.29023 * 15 14 12 17 17 C 1.53231 * 109.87111 * 306.61241 * 16 15 14 18 18 C 1.52686 * 109.00477 * 60.41185 * 17 16 15 19 19 H 1.08997 * 109.36937 * 56.75542 * 18 17 16 20 20 C 1.52722 * 111.23592 * 177.67169 * 18 17 16 21 21 N 1.47076 * 108.87793 * 180.49775 * 20 18 17 22 22 C 1.46707 * 111.82418 * 298.96909 * 21 20 18 23 23 C 1.53242 * 110.09934 * 60.34797 * 22 21 20 24 24 C 1.46596 * 121.03719 * 184.68879 * 14 12 2 25 25 H 1.08998 * 109.52725 * 244.23353 * 24 14 12 26 26 H 1.08998 * 109.46959 * 173.33002 * 1 2 3 27 27 H 1.08994 * 109.46793 * 293.33240 * 1 2 3 28 28 H 1.08999 * 109.47095 * 53.33277 * 1 2 3 29 29 H 0.96999 * 120.00150 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.50863 * 353.23526 * 15 14 12 31 31 H 1.09009 * 109.50441 * 113.31071 * 15 14 12 32 32 H 1.08989 * 109.40494 * 66.73542 * 16 15 14 33 33 H 1.09001 * 109.40405 * 186.49411 * 16 15 14 34 34 H 1.09001 * 109.54794 * 180.26876 * 17 16 15 35 35 H 1.09004 * 109.55078 * 300.45710 * 17 16 15 36 36 H 1.09000 * 109.56805 * 300.31710 * 20 18 17 37 37 H 1.08996 * 109.57262 * 60.68253 * 20 18 17 38 38 H 1.00899 * 110.99971 * 63.52414 * 21 20 18 39 39 H 1.09003 * 109.36571 * 180.54386 * 22 21 20 40 40 H 1.09000 * 109.36229 * 300.28748 * 22 21 20 41 41 H 1.08996 * 109.60429 * 61.23585 * 23 22 21 42 42 H 1.09000 * 109.60843 * 181.56131 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6945 -0.2425 -2.4828 7 7 0.9384 0.8267 -2.6034 8 14 2.3108 -1.1276 -4.0080 9 1 1.8153 -2.5275 -4.0022 10 1 1.8109 -0.4310 -5.2205 11 1 3.7958 -1.1282 -4.0139 12 6 2.0324 -0.7104 1.2304 13 8 1.3205 -1.5076 1.8034 14 7 3.2730 -0.4599 1.6939 15 6 4.1157 0.5802 1.0824 16 6 5.4684 -0.0256 0.6994 17 6 6.0911 -0.7199 1.9152 18 6 5.1577 -1.8336 2.3840 19 1 4.9756 -2.5234 1.5599 20 6 5.7573 -2.5986 3.5619 21 7 4.8245 -3.6628 3.9625 22 6 3.5309 -3.1207 4.3927 23 6 2.8802 -2.3388 3.2465 24 6 3.8225 -1.2108 2.8267 25 1 3.9928 -0.5341 3.6641 26 1 -0.3633 -1.0207 -0.1194 27 1 -0.3633 0.4070 0.9436 28 1 -0.3633 0.6137 -0.8243 29 1 0.7005 1.1556 -3.4844 30 1 3.6249 0.9682 0.1898 31 1 4.2681 1.3907 1.7952 32 1 5.3261 -0.7531 -0.0996 33 1 6.1343 0.7650 0.3535 34 1 7.0558 -1.1450 1.6380 35 1 6.2290 0.0045 2.7180 36 1 6.7086 -3.0399 3.2644 37 1 5.9145 -1.9172 4.3979 38 1 4.7055 -4.3372 3.2215 39 1 2.8760 -3.9402 4.6888 40 1 3.6826 -2.4543 5.2418 41 1 2.7037 -3.0059 2.4028 42 1 1.9333 -1.9166 3.5831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344470956.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:27:37 Heat of formation + Delta-G solvation = -59.153997 kcal Electronic energy + Delta-G solvation = -22076.600146 eV Core-core repulsion = 19055.050018 eV Total energy + Delta-G solvation = -3021.550127 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.74624 -39.34894 -37.16937 -35.86115 -34.03723 -32.80557 -31.56037 -30.91482 -27.34851 -26.44623 -25.32032 -23.96168 -23.43425 -21.67978 -21.36095 -19.81508 -18.40184 -17.72860 -17.26423 -16.76158 -16.31444 -16.04216 -15.55864 -15.33562 -15.18632 -14.88993 -14.71968 -14.00413 -13.72086 -13.68685 -13.48354 -13.27583 -12.95276 -12.86073 -12.77694 -12.62561 -12.37513 -12.29857 -12.22115 -12.14114 -11.81583 -11.69056 -11.53581 -11.35153 -11.09674 -10.59232 -10.11352 -9.43578 -9.11828 -8.19380 -6.33903 1.38039 1.40638 1.47525 1.89553 2.24681 2.41387 3.09726 3.38347 3.61494 3.70108 3.85158 4.08986 4.16653 4.24084 4.28214 4.30369 4.45909 4.52200 4.57525 4.68828 4.77587 4.81830 4.89273 4.92118 4.94856 4.99386 5.02861 5.09067 5.15575 5.23102 5.29501 5.32685 5.43377 5.49664 5.62725 5.81879 5.87613 6.07198 6.11872 6.39218 6.60920 6.68275 7.32420 7.50178 8.86264 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022319 B = 0.006721 C = 0.006109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.254345 B = 4165.179399 C = 4582.161336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.028 3.972 3 H 0.039 0.961 4 C -0.519 4.519 5 H 0.041 0.959 6 C 0.028 3.972 7 N -0.907 5.907 8 Si 0.954 3.046 9 H -0.281 1.281 10 H -0.277 1.277 11 H -0.265 1.265 12 C 0.524 3.476 13 O -0.586 6.586 14 N -0.611 5.611 15 C 0.105 3.895 16 C -0.128 4.128 17 C -0.100 4.100 18 C -0.130 4.130 19 H 0.043 0.957 20 C 0.074 3.926 21 N -0.689 5.689 22 C 0.062 3.938 23 C -0.131 4.131 24 C 0.144 3.856 25 H 0.079 0.921 26 H 0.018 0.982 27 H 0.020 0.980 28 H 0.067 0.933 29 H 0.267 0.733 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.340 0.660 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.034 0.966 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.371 -1.564 10.099 16.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.007 3.993 3 H 0.057 0.943 4 C -0.558 4.558 5 H 0.059 0.941 6 C -0.172 4.172 7 N -0.545 5.545 8 Si 0.779 3.221 9 H -0.207 1.207 10 H -0.202 1.202 11 H -0.190 1.190 12 C 0.316 3.684 13 O -0.468 6.468 14 N -0.343 5.343 15 C -0.017 4.017 16 C -0.167 4.167 17 C -0.138 4.138 18 C -0.151 4.151 19 H 0.062 0.938 20 C -0.056 4.056 21 N -0.316 5.316 22 C -0.069 4.069 23 C -0.170 4.170 24 C 0.042 3.958 25 H 0.097 0.903 26 H 0.037 0.963 27 H 0.039 0.961 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.157 0.843 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.053 0.947 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.167 -1.891 10.918 16.456 hybrid contribution -0.823 -0.085 -2.164 2.316 sum 11.344 -1.976 8.754 14.465 Atomic orbital electron populations 1.21407 0.96918 0.99360 0.98884 1.18851 0.94085 0.96091 0.90281 0.94289 1.20737 1.32207 1.12423 0.90402 0.94118 1.25569 0.94804 0.95497 1.01364 1.69972 1.36407 1.23501 1.24598 0.85671 0.79166 0.78411 0.78811 1.20687 1.20200 1.18996 1.21502 0.80800 0.81411 0.84702 1.90531 1.58048 1.38010 1.60174 1.48191 1.14664 1.38189 1.33299 1.21870 0.91611 0.89542 0.98718 1.21848 0.95577 1.00859 0.98368 1.21432 0.98053 0.96880 0.97461 1.22333 0.95260 0.98261 0.99230 0.93794 1.22059 0.95695 0.92680 0.95199 1.60590 1.11672 1.16134 1.43229 1.22133 0.89825 0.98557 0.96339 1.22426 0.98688 0.97071 0.98831 1.21435 0.93581 0.92815 0.88008 0.90335 0.96261 0.96058 0.91377 0.92385 0.90489 0.90163 0.93949 0.88654 0.89722 0.89932 0.88751 0.89531 0.84283 0.90362 0.89986 0.94715 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.64 8.26 71.98 0.59 -5.04 16 2 C 0.03 1.43 1.80 -12.29 -0.02 1.41 16 3 H 0.04 2.04 6.43 -2.38 -0.02 2.02 16 4 C -0.52 -28.40 8.28 25.60 0.21 -28.18 16 5 H 0.04 2.29 7.74 -2.91 -0.02 2.27 16 6 C 0.03 1.52 5.30 84.66 0.45 1.97 16 7 N -0.91 -50.18 11.39 21.45 0.24 -49.93 16 8 Si 0.95 42.68 29.54 68.60 2.03 44.71 16 9 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 12 C 0.52 24.85 6.66 87.65 0.58 25.43 16 13 O -0.59 -30.01 11.99 -3.03 -0.04 -30.05 16 14 N -0.61 -23.17 2.96 -794.43 -2.35 -25.52 16 15 C 0.10 3.40 6.26 86.28 0.54 3.94 16 16 C -0.13 -3.41 6.05 30.70 0.19 -3.23 16 17 C -0.10 -2.09 5.30 30.57 0.16 -1.92 16 18 C -0.13 -3.25 2.12 -10.71 -0.02 -3.28 16 19 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 20 C 0.07 1.44 5.98 86.18 0.52 1.96 16 21 N -0.69 -15.48 6.83 -513.99 -3.51 -18.99 16 22 C 0.06 1.54 6.54 86.42 0.57 2.10 16 23 C -0.13 -4.39 3.83 30.63 0.12 -4.28 16 24 C 0.14 4.47 2.72 45.21 0.12 4.60 16 25 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.02 1.02 8.08 -2.39 -0.02 1.00 16 27 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 3.72 6.27 -2.39 -0.01 3.71 16 29 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 30 H 0.08 2.99 5.38 -2.39 -0.01 2.98 16 31 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.34 7.79 8.88 -89.69 -0.80 7.00 16 39 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.03 1.40 7.26 -2.39 -0.02 1.38 16 42 H 0.06 2.51 6.49 -2.39 -0.02 2.50 16 Total: -1.00 -63.18 315.67 0.58 -62.60 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.20 Total: 21.71 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 4.00 Total: -4.52 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -5.62 Total: -94.44 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.04 Total: -30.05 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -63.18 0.58 -62.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344470956.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.443 kcal (2) G-P(sol) polarization free energy of solvation -63.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds