Wall clock time and date at job start Mon Mar 30 2020 19:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08991 * 109.47050 * 2 1 4 4 C 1.50698 * 109.47165 * 239.99568 * 2 1 3 5 5 H 1.07996 * 120.00091 * 240.00366 * 4 2 1 6 6 C 1.37875 * 119.99839 * 60.00076 * 4 2 1 7 7 N 1.31523 * 120.00194 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00272 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47041 * 59.99684 * 8 6 4 10 10 H 1.48495 * 109.47622 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.46793 * 300.00137 * 8 6 4 12 12 C 1.50701 * 109.46652 * 119.99801 * 2 1 3 13 13 O 1.21273 * 120.00404 * 34.74807 * 12 2 1 14 14 N 1.34781 * 119.99529 * 214.74594 * 12 2 1 15 15 C 1.47183 * 125.41052 * 4.88775 * 14 12 2 16 16 C 1.53989 * 105.51378 * 161.61272 * 15 14 12 17 17 H 1.09004 * 107.51651 * 276.22505 * 16 15 14 18 18 C 1.50372 * 112.02987 * 157.38048 * 16 15 14 19 19 C 1.52447 * 112.63057 * 283.63950 * 18 16 15 20 20 C 1.53204 * 108.43849 * 303.07390 * 19 18 16 21 21 C 1.52266 * 108.68398 * 64.92217 * 20 19 18 22 22 H 1.08996 * 108.92443 * 61.45169 * 21 20 19 23 23 N 1.46903 * 108.84490 * 180.02562 * 21 20 19 24 24 C 1.51751 * 112.28439 * 300.72384 * 21 20 19 25 25 H 1.08998 * 109.92113 * 279.71818 * 24 21 20 26 26 C 1.46920 * 125.40594 * 185.19605 * 14 12 2 27 27 H 1.08998 * 109.46906 * 54.65953 * 1 2 3 28 28 H 1.09002 * 109.47106 * 294.66538 * 1 2 3 29 29 H 1.08999 * 109.47388 * 174.66319 * 1 2 3 30 30 H 0.96993 * 120.00188 * 179.97438 * 7 6 4 31 31 H 1.09003 * 110.21852 * 280.74790 * 15 14 12 32 32 H 1.08999 * 110.22073 * 42.68236 * 15 14 12 33 33 H 1.08994 * 108.85494 * 162.83241 * 18 16 15 34 34 H 1.08997 * 108.76998 * 44.39749 * 18 16 15 35 35 H 1.08994 * 109.64314 * 183.38555 * 19 18 16 36 36 H 1.09005 * 109.64009 * 62.75659 * 19 18 16 37 37 H 1.09002 * 109.59908 * 305.16081 * 20 19 18 38 38 H 1.08997 * 109.73219 * 184.76153 * 20 19 18 39 39 H 1.00904 * 110.99592 * 302.72003 * 23 21 20 40 40 H 1.00898 * 110.99966 * 66.66964 * 23 21 20 41 41 H 1.08995 * 109.88004 * 298.42210 * 26 14 12 42 42 H 1.09002 * 109.88437 * 59.42231 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8258 -2.5204 -4.0076 10 1 1.8260 -0.4209 -5.2204 11 1 3.8064 -1.1211 -4.0081 12 6 2.0323 -0.7104 1.2305 13 8 1.4208 -1.6584 1.6755 14 7 3.1612 -0.2920 1.8365 15 6 3.9385 0.9004 1.4621 16 6 4.8198 1.2180 2.6843 17 1 4.2178 1.8030 3.3797 18 6 6.0304 2.0283 2.3114 19 6 7.1122 1.1911 1.6386 20 6 7.4924 0.0437 2.5799 21 6 6.2868 -0.8716 2.7450 22 1 6.0214 -1.2856 1.7723 23 7 6.6474 -1.9731 3.6477 24 6 5.0841 -0.1420 3.3141 25 1 5.1845 -0.0473 4.3953 26 6 3.8147 -0.9575 2.9717 27 1 -0.3633 0.5944 -0.8383 28 1 -0.3633 0.4289 0.9339 29 1 -0.3634 -1.0232 -0.0956 30 1 0.7088 1.1611 -3.4844 31 1 4.5595 0.6873 0.5920 32 1 3.2700 1.7356 1.2533 33 1 6.4441 2.4790 3.2134 34 1 5.7247 2.8222 1.6299 35 1 7.9874 1.8109 1.4442 36 1 6.7314 0.7852 0.7013 37 1 7.7808 0.4473 3.5504 38 1 8.3239 -0.5196 2.1563 39 1 7.4461 -2.4808 3.2975 40 1 6.8163 -1.6337 4.5828 41 1 3.1420 -0.9737 3.8292 42 1 4.0888 -1.9760 2.6967 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353602078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:28:05 Heat of formation + Delta-G solvation = -55.699995 kcal Electronic energy + Delta-G solvation = -21552.436381 eV Core-core repulsion = 18531.036030 eV Total energy + Delta-G solvation = -3021.400351 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.39336 -38.13017 -35.28531 -33.92514 -33.66229 -30.89469 -30.07982 -29.09250 -26.56200 -25.19734 -24.33011 -22.32045 -21.89148 -20.93999 -18.87651 -18.28051 -16.51603 -16.31053 -15.96972 -15.60264 -14.74913 -14.70294 -14.41451 -14.05795 -13.81185 -13.50080 -13.04817 -12.73377 -12.70137 -12.28971 -12.03851 -11.56592 -11.51203 -11.42410 -11.24466 -11.18306 -10.95189 -10.79107 -10.62182 -10.54144 -10.33667 -10.20442 -10.06094 -10.00140 -8.99269 -8.70240 -8.58267 -8.31033 -7.85423 -6.07261 -4.13684 3.30104 3.34347 3.37654 3.78761 3.87649 4.28340 4.42605 4.50261 4.61877 4.82587 5.00461 5.04651 5.14160 5.24219 5.25097 5.42271 5.46197 5.65607 5.68441 5.82957 5.84565 5.98841 6.01842 6.03482 6.12071 6.21435 6.29619 6.34280 6.43012 6.48631 6.85245 7.02517 7.03479 7.08766 7.20258 7.35165 7.60705 7.79652 7.98687 8.22307 8.43897 8.85856 9.29546 9.51110 10.99448 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019891 B = 0.006092 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.339761 B = 4594.886434 C = 5015.483073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.036 3.964 3 H 0.043 0.957 4 C -0.506 4.506 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.541 3.459 13 O -0.562 6.562 14 N -0.626 5.626 15 C 0.115 3.885 16 C -0.093 4.093 17 H 0.073 0.927 18 C -0.103 4.103 19 C -0.118 4.118 20 C -0.149 4.149 21 C 0.098 3.902 22 H 0.084 0.916 23 N -0.844 5.844 24 C -0.077 4.077 25 H 0.079 0.921 26 C 0.117 3.883 27 H 0.085 0.915 28 H 0.008 0.992 29 H 0.039 0.961 30 H 0.263 0.737 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.340 0.660 40 H 0.336 0.664 41 H 0.054 0.946 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.772 3.614 10.491 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.015 3.985 3 H 0.061 0.939 4 C -0.544 4.544 5 H 0.074 0.926 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.334 3.666 13 O -0.440 6.440 14 N -0.362 5.362 15 C -0.009 4.009 16 C -0.113 4.113 17 H 0.092 0.908 18 C -0.141 4.141 19 C -0.156 4.156 20 C -0.188 4.188 21 C -0.014 4.014 22 H 0.102 0.898 23 N -0.373 5.373 24 C -0.096 4.096 25 H 0.098 0.902 26 C -0.007 4.007 27 H 0.103 0.897 28 H 0.027 0.973 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.073 0.927 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.511 2.880 10.387 16.514 hybrid contribution 1.305 0.085 -0.698 1.483 sum 13.816 2.965 9.690 17.134 Atomic orbital electron populations 1.21609 0.96193 1.01032 0.99192 1.18872 0.94500 0.96207 0.88938 0.93903 1.20700 1.31960 1.12472 0.89270 0.92562 1.24889 0.94841 0.94929 0.98871 1.69886 1.36190 1.22711 1.23766 0.86553 0.79126 0.79935 0.81826 1.20093 1.21117 1.20191 1.21735 0.77249 0.83576 0.84086 1.90533 1.57170 1.29947 1.66371 1.48554 1.26250 1.27734 1.33643 1.22049 0.93755 0.88543 0.96525 1.21023 0.96868 0.95557 0.97854 0.90832 1.20729 0.94572 0.98104 1.00691 1.21436 0.98312 0.96792 0.99096 1.22274 0.98471 0.98129 0.99962 1.21113 0.93137 0.89983 0.97142 0.89811 1.58919 1.45177 1.27650 1.05513 1.21307 0.94350 0.94031 0.99915 0.90228 1.21950 0.92110 0.96895 0.89704 0.89673 0.97306 0.94161 0.92704 0.91404 0.90702 0.92112 0.91165 0.91889 0.91087 0.92227 0.92095 0.84753 0.85190 0.92737 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 8.46 37.16 0.31 -2.86 16 2 C 0.04 0.93 2.34 -92.92 -0.22 0.72 16 3 H 0.04 1.11 6.47 -51.93 -0.34 0.78 16 4 C -0.51 -14.17 8.55 -34.44 -0.29 -14.47 16 5 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 7 N -0.89 -24.82 11.38 55.43 0.63 -24.19 16 8 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.54 13.39 6.77 -10.98 -0.07 13.31 16 13 O -0.56 -15.53 16.69 5.56 0.09 -15.44 16 14 N -0.63 -12.52 3.33 -171.13 -0.57 -13.09 16 15 C 0.11 1.89 5.83 -3.15 -0.02 1.87 16 16 C -0.09 -1.15 2.68 -91.82 -0.25 -1.39 16 17 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 18 C -0.10 -1.03 5.27 -28.32 -0.15 -1.18 16 19 C -0.12 -1.16 5.89 -26.91 -0.16 -1.32 16 20 C -0.15 -1.37 5.44 -27.00 -0.15 -1.52 16 21 C 0.10 1.11 2.39 -68.72 -0.16 0.94 16 22 H 0.08 1.20 7.82 -51.93 -0.41 0.79 16 23 N -0.84 -8.47 9.19 -5.53 -0.05 -8.52 16 24 C -0.08 -0.95 2.70 -90.76 -0.25 -1.20 16 25 H 0.08 0.87 7.94 -51.93 -0.41 0.46 16 26 C 0.12 1.98 6.30 -2.91 -0.02 1.96 16 27 H 0.08 2.30 6.23 -51.93 -0.32 1.98 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.04 1.08 8.03 -51.93 -0.42 0.66 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 31 H 0.07 1.16 7.23 -51.93 -0.38 0.79 16 32 H 0.07 1.26 7.10 -51.93 -0.37 0.89 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.81 7.37 -51.93 -0.38 0.43 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.34 2.92 8.99 -39.29 -0.35 2.56 16 40 H 0.34 2.79 8.83 -39.29 -0.35 2.44 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 1.32 7.62 -51.93 -0.40 0.92 16 LS Contribution 324.08 15.07 4.88 4.88 Total: -1.00 -31.35 324.08 -8.58 -39.93 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.04 Total: 3.51 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.51 Total: -3.39 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.01 Total: -45.80 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: 0.09 Total: -15.44 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.35 -8.58 -39.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353602078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.766 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds