Wall clock time and date at job start Mon Mar 30 2020 19:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08991 * 109.47050 * 2 1 4 4 C 1.50698 * 109.47165 * 239.99568 * 2 1 3 5 5 H 1.07996 * 120.00091 * 240.00366 * 4 2 1 6 6 C 1.37875 * 119.99839 * 60.00076 * 4 2 1 7 7 N 1.31523 * 120.00194 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00272 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47041 * 59.99684 * 8 6 4 10 10 H 1.48495 * 109.47622 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.46793 * 300.00137 * 8 6 4 12 12 C 1.50701 * 109.46652 * 119.99801 * 2 1 3 13 13 O 1.21273 * 120.00404 * 34.74807 * 12 2 1 14 14 N 1.34781 * 119.99529 * 214.74594 * 12 2 1 15 15 C 1.47183 * 125.41052 * 4.88775 * 14 12 2 16 16 C 1.53989 * 105.51378 * 161.61272 * 15 14 12 17 17 H 1.09004 * 107.51651 * 276.22505 * 16 15 14 18 18 C 1.50372 * 112.02987 * 157.38048 * 16 15 14 19 19 C 1.52447 * 112.63057 * 283.63950 * 18 16 15 20 20 C 1.53204 * 108.43849 * 303.07390 * 19 18 16 21 21 C 1.52266 * 108.68398 * 64.92217 * 20 19 18 22 22 H 1.08996 * 108.92443 * 61.45169 * 21 20 19 23 23 N 1.46903 * 108.84490 * 180.02562 * 21 20 19 24 24 C 1.51751 * 112.28439 * 300.72384 * 21 20 19 25 25 H 1.08998 * 109.92113 * 279.71818 * 24 21 20 26 26 C 1.46920 * 125.40594 * 185.19605 * 14 12 2 27 27 H 1.08998 * 109.46906 * 54.65953 * 1 2 3 28 28 H 1.09002 * 109.47106 * 294.66538 * 1 2 3 29 29 H 1.08999 * 109.47388 * 174.66319 * 1 2 3 30 30 H 0.96993 * 120.00188 * 179.97438 * 7 6 4 31 31 H 1.09003 * 110.21852 * 280.74790 * 15 14 12 32 32 H 1.08999 * 110.22073 * 42.68236 * 15 14 12 33 33 H 1.08994 * 108.85494 * 162.83241 * 18 16 15 34 34 H 1.08997 * 108.76998 * 44.39749 * 18 16 15 35 35 H 1.08994 * 109.64314 * 183.38555 * 19 18 16 36 36 H 1.09005 * 109.64009 * 62.75659 * 19 18 16 37 37 H 1.09002 * 109.59908 * 305.16081 * 20 19 18 38 38 H 1.08997 * 109.73219 * 184.76153 * 20 19 18 39 39 H 1.00904 * 110.99592 * 302.72003 * 23 21 20 40 40 H 1.00898 * 110.99966 * 66.66964 * 23 21 20 41 41 H 1.08995 * 109.88004 * 298.42210 * 26 14 12 42 42 H 1.09002 * 109.88437 * 59.42231 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8258 -2.5204 -4.0076 10 1 1.8260 -0.4209 -5.2204 11 1 3.8064 -1.1211 -4.0081 12 6 2.0323 -0.7104 1.2305 13 8 1.4208 -1.6584 1.6755 14 7 3.1612 -0.2920 1.8365 15 6 3.9385 0.9004 1.4621 16 6 4.8198 1.2180 2.6843 17 1 4.2178 1.8030 3.3797 18 6 6.0304 2.0283 2.3114 19 6 7.1122 1.1911 1.6386 20 6 7.4924 0.0437 2.5799 21 6 6.2868 -0.8716 2.7450 22 1 6.0214 -1.2856 1.7723 23 7 6.6474 -1.9731 3.6477 24 6 5.0841 -0.1420 3.3141 25 1 5.1845 -0.0473 4.3953 26 6 3.8147 -0.9575 2.9717 27 1 -0.3633 0.5944 -0.8383 28 1 -0.3633 0.4289 0.9339 29 1 -0.3634 -1.0232 -0.0956 30 1 0.7088 1.1611 -3.4844 31 1 4.5595 0.6873 0.5920 32 1 3.2700 1.7356 1.2533 33 1 6.4441 2.4790 3.2134 34 1 5.7247 2.8222 1.6299 35 1 7.9874 1.8109 1.4442 36 1 6.7314 0.7852 0.7013 37 1 7.7808 0.4473 3.5504 38 1 8.3239 -0.5196 2.1563 39 1 7.4461 -2.4808 3.2975 40 1 6.8163 -1.6337 4.5828 41 1 3.1420 -0.9737 3.8292 42 1 4.0888 -1.9760 2.6967 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353602078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:28:05 Heat of formation + Delta-G solvation = -77.124134 kcal Electronic energy + Delta-G solvation = -21553.365401 eV Core-core repulsion = 18531.036030 eV Total energy + Delta-G solvation = -3022.329371 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.66008 -39.81941 -36.60239 -35.83980 -34.79640 -32.69887 -31.62843 -30.20564 -27.62666 -27.34975 -25.90635 -23.73566 -22.93948 -22.23355 -20.17182 -19.76643 -18.49842 -18.03729 -17.27959 -16.73095 -16.56932 -16.03136 -15.65240 -15.33067 -15.06680 -14.75317 -14.48105 -14.17168 -14.02778 -13.68634 -13.53637 -13.46176 -12.93431 -12.79879 -12.74980 -12.66360 -12.50021 -12.26489 -12.21065 -12.14420 -12.05199 -11.56766 -11.32894 -11.12804 -10.93447 -10.65776 -10.36457 -9.53567 -9.47185 -8.20301 -6.34953 1.38591 1.41722 1.48831 1.84784 2.23677 2.42464 3.08535 3.35227 3.44474 3.63844 3.86243 4.05684 4.15128 4.24235 4.26176 4.38835 4.46263 4.52994 4.56792 4.64736 4.72018 4.75478 4.88277 4.92822 4.94094 5.03041 5.06010 5.09294 5.22617 5.27690 5.32749 5.38639 5.43199 5.52055 5.56116 5.68264 5.81319 6.10731 6.30179 6.62537 6.67166 6.69400 7.29627 7.41161 8.85816 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019891 B = 0.006092 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.339761 B = 4594.886434 C = 5015.483073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.035 3.965 3 H 0.041 0.959 4 C -0.530 4.530 5 H 0.038 0.962 6 C 0.029 3.971 7 N -0.905 5.905 8 Si 0.958 3.042 9 H -0.280 1.280 10 H -0.272 1.272 11 H -0.267 1.267 12 C 0.534 3.466 13 O -0.602 6.602 14 N -0.623 5.623 15 C 0.107 3.893 16 C -0.079 4.079 17 H 0.086 0.914 18 C -0.100 4.100 19 C -0.120 4.120 20 C -0.139 4.139 21 C 0.103 3.897 22 H 0.046 0.954 23 N -0.854 5.854 24 C -0.063 4.063 25 H 0.109 0.891 26 C 0.112 3.888 27 H 0.073 0.927 28 H 0.024 0.976 29 H 0.020 0.980 30 H 0.269 0.731 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.349 0.651 40 H 0.349 0.651 41 H 0.052 0.948 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.148 4.782 11.375 20.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.014 3.986 3 H 0.059 0.941 4 C -0.569 4.569 5 H 0.057 0.943 6 C -0.172 4.172 7 N -0.543 5.543 8 Si 0.783 3.217 9 H -0.205 1.205 10 H -0.197 1.197 11 H -0.192 1.192 12 C 0.326 3.674 13 O -0.484 6.484 14 N -0.356 5.356 15 C -0.016 4.016 16 C -0.099 4.099 17 H 0.104 0.896 18 C -0.137 4.137 19 C -0.158 4.158 20 C -0.178 4.178 21 C -0.009 4.009 22 H 0.064 0.936 23 N -0.384 5.384 24 C -0.082 4.082 25 H 0.127 0.873 26 C -0.010 4.010 27 H 0.092 0.908 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.162 0.838 40 H 0.163 0.837 41 H 0.070 0.930 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 14.937 4.084 11.292 19.165 hybrid contribution 0.557 -0.283 -0.964 1.149 sum 15.494 3.801 10.328 19.005 Atomic orbital electron populations 1.21463 0.96480 0.99561 0.99488 1.18793 0.94398 0.96031 0.89412 0.94107 1.20803 1.32792 1.12521 0.90739 0.94329 1.25590 0.94730 0.95525 1.01352 1.69960 1.36259 1.23326 1.24758 0.85614 0.79077 0.78490 0.78535 1.20522 1.19669 1.19159 1.21442 0.78636 0.83196 0.84091 1.90493 1.58947 1.31521 1.67440 1.48515 1.24955 1.28531 1.33581 1.22300 0.93822 0.86830 0.98638 1.21028 0.97432 0.95874 0.95551 0.89574 1.20743 0.93361 0.97588 1.02052 1.21461 0.98967 0.97273 0.98146 1.22186 0.97274 0.97355 1.00973 1.20924 0.93824 0.90617 0.95529 0.93611 1.58831 1.46025 1.27475 1.06114 1.21305 0.92138 0.93128 1.01630 0.87327 1.22153 0.94043 0.96624 0.88217 0.90781 0.95693 0.96091 0.92204 0.92492 0.91271 0.89191 0.91038 0.89920 0.93605 0.89973 0.91349 0.83753 0.83653 0.92974 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.00 8.46 71.98 0.61 -5.39 16 2 C 0.03 1.87 2.34 -12.28 -0.03 1.84 16 3 H 0.04 2.19 6.47 -2.39 -0.02 2.17 16 4 C -0.53 -30.66 8.55 25.60 0.22 -30.44 16 5 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 6 C 0.03 1.59 5.30 84.65 0.45 2.04 16 7 N -0.91 -50.94 11.38 21.45 0.24 -50.69 16 8 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 9 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 12 C 0.53 27.48 6.77 87.66 0.59 28.07 16 13 O -0.60 -34.67 16.69 -3.01 -0.05 -34.72 16 14 N -0.62 -25.57 3.33 -813.73 -2.71 -28.28 16 15 C 0.11 3.53 5.83 86.58 0.50 4.03 16 16 C -0.08 -1.77 2.68 -11.57 -0.03 -1.80 16 17 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 18 C -0.10 -1.66 5.27 29.56 0.16 -1.50 16 19 C -0.12 -2.04 5.89 30.48 0.18 -1.86 16 20 C -0.14 -2.11 5.44 30.42 0.17 -1.95 16 21 C 0.10 2.17 2.39 44.26 0.11 2.27 16 22 H 0.05 1.32 7.82 -2.39 -0.02 1.30 16 23 N -0.85 -15.48 9.19 -171.41 -1.57 -17.05 16 24 C -0.06 -1.44 2.70 -10.89 -0.03 -1.46 16 25 H 0.11 1.95 7.94 -2.39 -0.02 1.94 16 26 C 0.11 3.83 6.30 86.88 0.55 4.37 16 27 H 0.07 4.10 6.23 -2.39 -0.01 4.08 16 28 H 0.02 1.19 8.14 -2.39 -0.02 1.18 16 29 H 0.02 1.14 8.03 -2.39 -0.02 1.12 16 30 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 31 H 0.06 2.01 7.23 -2.39 -0.02 1.99 16 32 H 0.07 2.35 7.10 -2.39 -0.02 2.34 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.21 8.07 -2.39 -0.02 1.19 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.05 1.01 7.37 -2.38 -0.02 0.99 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.35 5.34 8.99 -89.69 -0.81 4.53 16 40 H 0.35 4.72 8.83 -89.70 -0.79 3.93 16 41 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.05 1.90 7.62 -2.39 -0.02 1.88 16 Total: -1.00 -69.83 324.08 0.79 -69.04 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -0.58 Total: 17.59 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 3.44 Total: -1.77 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -4.04 Total: -96.03 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -0.05 Total: -34.72 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -69.83 0.79 -69.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353602078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.084 kcal (2) G-P(sol) polarization free energy of solvation -69.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds