Wall clock time and date at job start Mon Mar 30 2020 19:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46662 * 2 1 4 4 C 1.52996 * 109.47336 * 119.99756 * 2 1 3 5 5 N 1.46498 * 109.47059 * 175.00083 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.50701 * 109.47355 * 180.02562 * 8 6 5 10 10 C 1.29441 * 117.95676 * 94.73445 * 9 8 6 11 11 C 1.50066 * 124.07191 * 180.23414 * 10 9 8 12 12 C 1.53021 * 110.20289 * 343.32337 * 11 10 9 13 13 C 1.53389 * 108.43741 * 49.24398 * 12 11 10 14 14 C 1.50064 * 117.96283 * 274.99891 * 9 8 6 15 15 N 1.46494 * 109.47171 * 240.00392 * 2 1 3 16 16 C 1.36934 * 120.00488 * 84.99750 * 15 2 1 17 17 H 1.08003 * 119.99785 * 359.97438 * 16 15 2 18 18 C 1.38817 * 120.00391 * 179.97438 * 16 15 2 19 19 N 1.31621 * 119.99622 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00020 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47035 * 60.00563 * 20 18 16 22 22 H 1.48498 * 109.46642 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47204 * 299.99988 * 20 18 16 24 24 H 1.08993 * 109.47064 * 300.00046 * 1 2 3 25 25 H 1.09001 * 109.47284 * 60.00249 * 1 2 3 26 26 H 1.09000 * 109.46662 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47066 * 55.00351 * 4 2 1 28 28 H 1.08994 * 109.46974 * 295.00498 * 4 2 1 29 29 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 30 30 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 31 31 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 32 32 H 1.07994 * 117.96642 * 0.47092 * 10 9 8 33 33 H 1.09003 * 109.48208 * 223.00250 * 11 10 9 34 34 H 1.08996 * 109.17786 * 103.45296 * 11 10 9 35 35 H 1.09009 * 109.64280 * 289.55850 * 12 11 10 36 36 H 1.09003 * 109.81828 * 169.03382 * 12 11 10 37 37 H 1.09003 * 109.63863 * 172.87784 * 13 12 11 38 38 H 1.08994 * 109.64295 * 52.25489 * 13 12 11 39 39 H 1.09001 * 109.35850 * 283.05795 * 14 9 8 40 40 H 1.09007 * 109.35612 * 42.77912 * 14 9 8 41 41 H 0.97009 * 119.99912 * 264.99313 * 15 2 1 42 42 H 0.97003 * 119.99413 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8262 1.1905 6 6 4.1736 -1.4236 2.1935 7 8 3.5706 -1.8787 3.1423 8 6 5.6760 -1.5262 2.1362 9 6 6.1788 -2.2322 3.3690 10 6 6.3810 -3.5087 3.2972 11 6 6.8740 -4.3474 4.4399 12 6 7.4827 -3.4567 5.5250 13 6 6.4962 -2.3229 5.8319 14 6 6.4080 -1.4127 4.6051 15 7 2.0184 -0.6905 -1.1962 16 6 2.1491 -0.0074 -2.3757 17 1 1.8919 1.0404 -2.4243 18 6 2.6124 -0.6616 -3.5091 19 7 2.9254 -1.9387 -3.4499 20 14 2.7901 0.2702 -5.1183 21 1 3.7445 1.3933 -4.9372 22 1 3.2992 -0.6482 -6.1683 23 1 1.4673 0.8058 -5.5288 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6055 -1.7198 1.2952 28 1 1.7517 -0.1583 2.1369 29 1 3.9825 -0.4620 0.4319 30 1 5.9681 -2.0901 1.2503 31 1 6.1069 -0.5261 2.0886 32 1 6.1864 -4.0002 2.3555 33 1 7.6298 -5.0451 4.0792 34 1 6.0385 -4.9079 4.8592 35 1 8.4240 -3.0372 5.1695 36 1 7.6603 -4.0422 6.4272 37 1 6.8515 -1.7500 6.6885 38 1 5.5135 -2.7412 6.0493 39 1 7.3386 -0.8549 4.5013 40 1 5.5808 -0.7147 4.7343 41 1 2.2492 -1.6317 -1.1526 42 1 3.2495 -2.3957 -4.2418 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480435059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:02 Heat of formation + Delta-G solvation = -38.936179 kcal Electronic energy + Delta-G solvation = -20182.507922 eV Core-core repulsion = 17161.834505 eV Total energy + Delta-G solvation = -3020.673417 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.66350 -38.16488 -36.24791 -33.47135 -32.83260 -31.78844 -30.74660 -28.81859 -27.69736 -25.24740 -23.64251 -23.23221 -21.78407 -20.18054 -19.81156 -17.56604 -17.42242 -16.51045 -16.04809 -15.30120 -15.18286 -14.69866 -14.33271 -14.01543 -13.80856 -13.49255 -13.31632 -12.93830 -12.63730 -12.33788 -12.20006 -12.13174 -12.03142 -12.01558 -11.45614 -11.37130 -10.87944 -10.84352 -10.76893 -10.48520 -10.38181 -10.22501 -10.04044 -9.73241 -9.55278 -9.00300 -8.66121 -8.55815 -7.06219 -5.83411 -3.13707 2.28810 3.03982 3.38978 3.44316 3.45027 3.76828 4.52872 4.61484 4.69020 4.86690 5.13375 5.21488 5.29714 5.37872 5.45439 5.47992 5.49481 5.56548 5.58475 5.60435 5.75842 5.78128 5.89523 5.92208 5.95318 6.04127 6.09494 6.16078 6.18664 6.28795 6.34118 6.56088 6.71156 6.75211 6.87987 7.05725 7.09256 7.63328 8.01550 8.34157 8.66147 9.45892 10.01092 10.36872 11.38457 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025112 B = 0.003870 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.725519 B = 7232.524534 C = 7905.050306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.053 0.947 4 C 0.116 3.884 5 N -0.715 5.715 6 C 0.512 3.488 7 O -0.550 6.550 8 C -0.112 4.112 9 C -0.096 4.096 10 C -0.152 4.152 11 C -0.086 4.086 12 C -0.120 4.120 13 C -0.118 4.118 14 C -0.078 4.078 15 N -0.724 5.724 16 C -0.244 4.244 17 H 0.070 0.930 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 H 0.039 0.961 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.410 0.590 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.385 0.615 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.776 0.219 15.273 17.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.071 0.929 4 C -0.009 4.009 5 N -0.367 5.367 6 C 0.298 3.702 7 O -0.428 6.428 8 C -0.152 4.152 9 C -0.096 4.096 10 C -0.170 4.170 11 C -0.123 4.123 12 C -0.157 4.157 13 C -0.156 4.156 14 C -0.115 4.115 15 N -0.366 5.366 16 C -0.375 4.375 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.578 5.578 20 Si 0.738 3.262 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.246 0.754 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.219 0.781 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.346 0.014 15.780 17.406 hybrid contribution 0.198 0.305 -1.580 1.621 sum 7.544 0.319 14.201 16.083 Atomic orbital electron populations 1.22363 0.98376 1.01255 1.00325 1.20506 0.92640 0.95710 0.86219 0.92939 1.21649 0.79812 1.00954 0.98456 1.46021 1.08128 1.59168 1.23354 1.20507 0.89569 0.77773 0.82397 1.90659 1.70392 1.47959 1.33778 1.20860 0.92953 1.02952 0.98457 1.20270 0.99678 0.94840 0.94834 1.21860 1.01274 0.94542 0.99354 1.20382 1.00083 0.97414 0.94425 1.21598 0.98628 0.97164 0.98313 1.21571 0.99987 0.96852 0.97150 1.20329 1.01475 0.97513 0.92219 1.42467 1.78086 1.10831 1.05239 1.19185 1.37038 0.93881 0.87393 0.91182 1.24745 1.01990 0.95910 0.98007 1.69659 1.50465 1.08627 1.29076 0.86283 0.77784 0.78583 0.83587 1.21245 1.21726 1.21305 0.94213 0.92357 0.93231 0.92017 0.92037 0.75405 0.88285 0.88645 0.87984 0.91373 0.91037 0.91931 0.92018 0.92021 0.91488 0.91326 0.90967 0.78083 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.49 37.16 0.35 -2.50 16 2 C 0.16 3.01 3.05 -67.93 -0.21 2.80 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 4 C 0.12 2.02 5.23 -4.04 -0.02 1.99 16 5 N -0.71 -12.02 5.39 -60.30 -0.32 -12.34 16 6 C 0.51 8.50 7.82 -10.98 -0.09 8.42 16 7 O -0.55 -10.77 16.03 5.55 0.09 -10.68 16 8 C -0.11 -1.48 5.71 -29.03 -0.17 -1.65 16 9 C -0.10 -1.24 4.33 -100.94 -0.44 -1.68 16 10 C -0.15 -1.94 9.37 -35.90 -0.34 -2.27 16 11 C -0.09 -0.91 6.11 -28.18 -0.17 -1.08 16 12 C -0.12 -1.12 6.01 -26.52 -0.16 -1.28 16 13 C -0.12 -1.22 6.01 -26.52 -0.16 -1.38 16 14 C -0.08 -0.90 5.80 -28.18 -0.16 -1.06 16 15 N -0.72 -17.02 4.56 -53.43 -0.24 -17.26 16 16 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 17 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.06 13.06 55.49 0.72 -26.34 16 20 Si 0.91 21.63 29.55 -169.99 -5.02 16.60 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.41 6.92 8.14 -40.82 -0.33 6.59 16 30 H 0.10 1.26 7.80 -51.93 -0.40 0.85 16 31 H 0.10 1.06 8.11 -51.93 -0.42 0.64 16 32 H 0.10 1.32 7.74 -52.49 -0.41 0.92 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.56 8.13 -51.92 -0.42 0.14 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.39 9.84 7.80 -40.82 -0.32 9.52 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 343.90 15.07 5.18 5.18 Total: -1.00 -30.05 343.90 -8.74 -38.79 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -7.34 Total: 12.64 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -1.80 Total: -6.60 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.16 Total: -55.94 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.05 -8.74 -38.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480435059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.142 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds