Wall clock time and date at job start Mon Mar 30 2020 19:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.47108 * 119.99785 * 2 1 4 4 O 1.21613 * 119.99960 * 179.97438 * 3 2 1 5 5 N 1.34777 * 120.00078 * 0.02562 * 3 2 1 6 6 C 1.46498 * 119.99828 * 180.27699 * 5 3 2 7 7 C 1.52996 * 109.47059 * 179.72339 * 6 5 3 8 8 C 1.53003 * 109.47301 * 179.97438 * 7 6 5 9 9 H 1.08992 * 109.47039 * 305.00167 * 8 7 6 10 10 C 1.53001 * 109.46949 * 184.99469 * 8 7 6 11 11 N 1.46503 * 109.46803 * 64.99966 * 8 7 6 12 12 C 1.36938 * 119.99628 * 204.99730 * 11 8 7 13 13 H 1.08001 * 120.00307 * 0.02562 * 12 11 8 14 14 C 1.38816 * 120.00044 * 179.97438 * 12 11 8 15 15 N 1.31623 * 119.99872 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00148 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47187 * 60.00068 * 16 14 12 18 18 H 1.48503 * 109.47243 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47154 * 300.00467 * 16 14 12 20 20 C 1.32988 * 120.00407 * 180.02562 * 2 1 3 21 21 C 1.51404 * 136.32146 * 179.62990 * 20 2 1 22 22 C 1.53367 * 87.52103 * 206.05294 * 21 20 2 23 23 C 1.51412 * 136.31427 * 359.97438 * 20 2 1 24 24 H 1.09001 * 109.47288 * 89.99866 * 1 2 3 25 25 H 1.09001 * 109.46749 * 210.00016 * 1 2 3 26 26 H 1.08997 * 109.47440 * 329.99955 * 1 2 3 27 27 H 0.97001 * 119.99727 * 359.97438 * 5 3 2 28 28 H 1.09004 * 109.46963 * 299.72135 * 6 5 3 29 29 H 1.08994 * 109.47567 * 59.72287 * 6 5 3 30 30 H 1.09004 * 109.47066 * 299.99732 * 7 6 5 31 31 H 1.09000 * 109.47665 * 59.99541 * 7 6 5 32 32 H 1.09008 * 109.46576 * 179.97438 * 10 8 7 33 33 H 1.08992 * 109.47820 * 300.00220 * 10 8 7 34 34 H 1.09003 * 109.46585 * 60.00658 * 10 8 7 35 35 H 0.97002 * 120.00479 * 25.00003 * 11 8 7 36 36 H 0.96990 * 120.00063 * 179.97438 * 15 14 12 37 37 H 1.08998 * 113.56056 * 320.63877 * 21 20 2 38 38 H 1.09004 * 113.56286 * 91.36829 * 21 20 2 39 39 H 1.09004 * 113.97423 * 220.28951 * 22 21 20 40 40 H 1.09006 * 113.60070 * 88.79537 * 22 21 20 41 41 H 1.08999 * 113.55796 * 268.62982 * 23 20 2 42 42 H 1.08996 * 113.56131 * 39.36710 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.4586 1.2741 0.0005 5 7 1.5685 2.4412 0.0005 6 6 2.3010 3.7099 -0.0056 7 6 1.3068 4.8728 -0.0106 8 6 2.0717 6.1978 -0.0163 9 1 2.7639 6.2214 0.8253 10 6 1.0822 7.3585 0.1043 11 7 2.8214 6.3234 -1.2688 12 6 3.9406 7.1107 -1.3208 13 1 4.2709 7.6387 -0.4384 14 6 4.6512 7.2294 -2.5073 15 7 4.2490 6.5855 -3.5825 16 14 6.1784 8.3027 -2.5781 17 1 7.1828 7.7991 -1.6072 18 1 6.7495 8.2613 -3.9483 19 1 5.8166 9.7016 -2.2351 20 6 2.1720 -1.1517 -0.0005 21 6 3.6250 -1.5771 -0.0075 22 6 3.1709 -2.8814 -0.6743 23 6 1.8139 -2.6228 -0.0007 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 0.5985 2.4411 0.0005 28 1 2.9280 3.7717 0.8839 29 1 2.9273 3.7636 -0.8960 30 1 0.6798 4.8109 -0.9001 31 1 0.6804 4.8192 0.8798 32 1 1.6272 8.3025 0.1006 33 1 0.3900 7.3349 -0.7373 34 1 0.5245 7.2650 1.0362 35 1 2.5249 5.8490 -2.0612 36 1 4.7452 6.6687 -4.4117 37 1 4.2566 -0.9599 -0.6464 38 1 4.0421 -1.7196 0.9895 39 1 3.6835 -3.7696 -0.3048 40 1 3.1399 -2.8274 -1.7625 41 1 1.7344 -3.0520 0.9981 42 1 0.9601 -2.8633 -0.6341 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480763507.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:06 Heat of formation + Delta-G solvation = -2.258491 kcal Electronic energy + Delta-G solvation = -19945.598084 eV Core-core repulsion = 16926.515130 eV Total energy + Delta-G solvation = -3019.082953 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.88146 -38.35751 -36.48429 -34.34714 -33.19529 -32.08140 -29.17819 -28.01149 -26.70009 -25.66066 -24.11237 -23.32490 -22.09461 -20.49923 -19.75469 -18.17285 -17.15703 -16.44783 -15.87042 -15.69664 -15.24797 -14.64949 -14.30454 -13.96276 -13.69088 -13.40100 -13.30826 -12.76738 -12.61438 -12.57100 -12.43119 -12.09145 -11.96715 -11.72971 -11.49676 -11.10144 -11.02186 -10.86755 -10.69802 -10.62746 -10.53910 -10.25505 -9.96387 -9.59991 -9.44113 -8.98629 -8.86454 -8.63701 -6.91057 -5.70886 -2.99527 1.36270 3.37862 3.46935 3.48667 3.53072 3.53878 4.28563 4.38390 4.59219 4.64630 4.90439 4.93127 5.13584 5.32627 5.36544 5.44210 5.44921 5.48090 5.56895 5.60981 5.62220 5.72631 5.75103 5.92607 5.96128 6.08992 6.11417 6.18671 6.22934 6.39848 6.44042 6.54195 6.61044 6.74229 6.80496 6.90376 7.09761 7.75213 7.78743 8.47512 8.50683 9.58708 10.15673 10.50309 11.51771 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021487 B = 0.003858 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.815107 B = 7255.761815 C = 8205.930127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.164 4.164 3 C 0.550 3.450 4 O -0.537 6.537 5 N -0.726 5.726 6 C 0.122 3.878 7 C -0.132 4.132 8 C 0.174 3.826 9 H 0.049 0.951 10 C -0.163 4.163 11 N -0.723 5.723 12 C -0.238 4.238 13 H 0.069 0.931 14 C -0.013 4.013 15 N -0.933 5.933 16 Si 0.905 3.095 17 H -0.286 1.286 18 H -0.292 1.292 19 H -0.287 1.287 20 C -0.075 4.075 21 C -0.103 4.103 22 C -0.142 4.142 23 C -0.104 4.104 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.395 0.605 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.035 0.965 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.365 -16.832 8.703 21.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.167 4.167 3 C 0.338 3.662 4 O -0.416 6.416 5 N -0.377 5.377 6 C 0.000 4.000 7 C -0.171 4.171 8 C 0.064 3.936 9 H 0.067 0.933 10 C -0.223 4.223 11 N -0.365 5.365 12 C -0.370 4.370 13 H 0.087 0.913 14 C -0.209 4.209 15 N -0.581 5.581 16 Si 0.737 3.263 17 H -0.213 1.213 18 H -0.218 1.218 19 H -0.214 1.214 20 C -0.077 4.077 21 C -0.140 4.140 22 C -0.179 4.179 23 C -0.141 4.141 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.230 0.770 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.116 0.884 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.323 -16.696 8.722 21.017 hybrid contribution 0.202 0.604 -0.436 0.772 sum -9.121 -16.092 8.286 20.268 Atomic orbital electron populations 1.20665 0.90694 1.02688 1.02436 1.20524 0.95744 0.91589 1.08861 1.18216 0.87312 0.83806 0.76889 1.90797 1.13488 1.87649 1.49621 1.46055 1.10135 1.06258 1.75286 1.21438 0.94690 0.80431 1.03479 1.22059 0.98050 0.95447 1.01537 1.20150 0.91986 0.90348 0.91123 0.93317 1.22426 0.99700 1.01070 0.99146 1.42447 1.29592 1.56905 1.07602 1.19184 1.01592 1.20517 0.95671 0.91275 1.24720 0.99464 1.00739 0.95931 1.69645 1.41376 1.46337 1.00785 0.86292 0.83268 0.80196 0.76583 1.21255 1.21757 1.21375 1.23196 0.98126 0.93561 0.92801 1.22164 0.94190 0.95823 1.01815 1.22718 0.96576 0.98196 1.00449 1.22278 0.98499 0.91792 1.01559 0.91099 0.91383 0.91554 0.77046 0.91899 0.89772 0.91646 0.91986 0.92739 0.93533 0.94592 0.78289 0.93532 0.89459 0.88678 0.90575 0.89766 0.88441 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.57 36.00 0.34 -0.58 16 2 C -0.16 -2.05 6.00 -102.85 -0.62 -2.66 16 3 C 0.55 8.95 7.75 -12.66 -0.10 8.85 16 4 O -0.54 -10.99 15.15 5.27 0.08 -10.91 16 5 N -0.73 -10.59 5.50 -61.49 -0.34 -10.93 16 6 C 0.12 2.13 5.56 -4.04 -0.02 2.11 16 7 C -0.13 -2.08 4.87 -26.73 -0.13 -2.21 16 8 C 0.17 3.41 2.89 -67.93 -0.20 3.21 16 9 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 10 C -0.16 -2.89 9.49 37.16 0.35 -2.54 16 11 N -0.72 -18.05 4.57 -53.42 -0.24 -18.30 16 12 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 13 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 14 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 15 N -0.93 -28.65 13.06 55.49 0.72 -27.92 16 16 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 18 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 20 C -0.08 -0.88 6.60 -100.48 -0.66 -1.54 16 21 C -0.10 -1.20 6.99 -27.56 -0.19 -1.40 16 22 C -0.14 -1.23 8.17 -26.19 -0.21 -1.44 16 23 C -0.10 -0.85 7.72 -27.39 -0.21 -1.06 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.48 7.91 -51.93 -0.41 0.07 16 26 H 0.07 0.50 6.70 -51.93 -0.35 0.15 16 27 H 0.40 4.43 6.57 -40.82 -0.27 4.16 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.82 7.75 -51.93 -0.40 1.42 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.38 10.21 7.80 -40.82 -0.32 9.89 16 36 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.09 1.24 7.49 -51.93 -0.39 0.86 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 346.33 15.07 5.22 5.22 Total: -1.00 -33.16 346.33 -8.65 -41.81 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -7.18 Total: 9.72 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -1.89 Total: -6.57 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.14 Total: -57.15 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.16 -8.65 -41.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480763507.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.550 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds