Wall clock time and date at job start Mon Mar 30 2020 19:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.47108 * 119.99785 * 2 1 4 4 O 1.21613 * 119.99960 * 179.97438 * 3 2 1 5 5 N 1.34777 * 120.00078 * 0.02562 * 3 2 1 6 6 C 1.46498 * 119.99828 * 180.27699 * 5 3 2 7 7 C 1.52996 * 109.47059 * 179.72339 * 6 5 3 8 8 C 1.53003 * 109.47301 * 179.97438 * 7 6 5 9 9 H 1.08992 * 109.47039 * 305.00167 * 8 7 6 10 10 C 1.53001 * 109.46949 * 184.99469 * 8 7 6 11 11 N 1.46503 * 109.46803 * 64.99966 * 8 7 6 12 12 C 1.36938 * 119.99628 * 204.99730 * 11 8 7 13 13 H 1.08001 * 120.00307 * 0.02562 * 12 11 8 14 14 C 1.38816 * 120.00044 * 179.97438 * 12 11 8 15 15 N 1.31623 * 119.99872 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00148 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47187 * 60.00068 * 16 14 12 18 18 H 1.48503 * 109.47243 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47154 * 300.00467 * 16 14 12 20 20 C 1.32988 * 120.00407 * 180.02562 * 2 1 3 21 21 C 1.51404 * 136.32146 * 179.62990 * 20 2 1 22 22 C 1.53367 * 87.52103 * 206.05294 * 21 20 2 23 23 C 1.51412 * 136.31427 * 359.97438 * 20 2 1 24 24 H 1.09001 * 109.47288 * 89.99866 * 1 2 3 25 25 H 1.09001 * 109.46749 * 210.00016 * 1 2 3 26 26 H 1.08997 * 109.47440 * 329.99955 * 1 2 3 27 27 H 0.97001 * 119.99727 * 359.97438 * 5 3 2 28 28 H 1.09004 * 109.46963 * 299.72135 * 6 5 3 29 29 H 1.08994 * 109.47567 * 59.72287 * 6 5 3 30 30 H 1.09004 * 109.47066 * 299.99732 * 7 6 5 31 31 H 1.09000 * 109.47665 * 59.99541 * 7 6 5 32 32 H 1.09008 * 109.46576 * 179.97438 * 10 8 7 33 33 H 1.08992 * 109.47820 * 300.00220 * 10 8 7 34 34 H 1.09003 * 109.46585 * 60.00658 * 10 8 7 35 35 H 0.97002 * 120.00479 * 25.00003 * 11 8 7 36 36 H 0.96990 * 120.00063 * 179.97438 * 15 14 12 37 37 H 1.08998 * 113.56056 * 320.63877 * 21 20 2 38 38 H 1.09004 * 113.56286 * 91.36829 * 21 20 2 39 39 H 1.09004 * 113.97423 * 220.28951 * 22 21 20 40 40 H 1.09006 * 113.60070 * 88.79537 * 22 21 20 41 41 H 1.08999 * 113.55796 * 268.62982 * 23 20 2 42 42 H 1.08996 * 113.56131 * 39.36710 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.4586 1.2741 0.0005 5 7 1.5685 2.4412 0.0005 6 6 2.3010 3.7099 -0.0056 7 6 1.3068 4.8728 -0.0106 8 6 2.0717 6.1978 -0.0163 9 1 2.7639 6.2214 0.8253 10 6 1.0822 7.3585 0.1043 11 7 2.8214 6.3234 -1.2688 12 6 3.9406 7.1107 -1.3208 13 1 4.2709 7.6387 -0.4384 14 6 4.6512 7.2294 -2.5073 15 7 4.2490 6.5855 -3.5825 16 14 6.1784 8.3027 -2.5781 17 1 7.1828 7.7991 -1.6072 18 1 6.7495 8.2613 -3.9483 19 1 5.8166 9.7016 -2.2351 20 6 2.1720 -1.1517 -0.0005 21 6 3.6250 -1.5771 -0.0075 22 6 3.1709 -2.8814 -0.6743 23 6 1.8139 -2.6228 -0.0007 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 0.5985 2.4411 0.0005 28 1 2.9280 3.7717 0.8839 29 1 2.9273 3.7636 -0.8960 30 1 0.6798 4.8109 -0.9001 31 1 0.6804 4.8192 0.8798 32 1 1.6272 8.3025 0.1006 33 1 0.3900 7.3349 -0.7373 34 1 0.5245 7.2650 1.0362 35 1 2.5249 5.8490 -2.0612 36 1 4.7452 6.6687 -4.4117 37 1 4.2566 -0.9599 -0.6464 38 1 4.0421 -1.7196 0.9895 39 1 3.6835 -3.7696 -0.3048 40 1 3.1399 -2.8274 -1.7625 41 1 1.7344 -3.0520 0.9981 42 1 0.9601 -2.8633 -0.6341 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480763507.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:06 Heat of formation + Delta-G solvation = -24.342878 kcal Electronic energy + Delta-G solvation = -19946.555734 eV Core-core repulsion = 16926.515130 eV Total energy + Delta-G solvation = -3020.040604 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.03371 -39.33974 -38.08800 -35.87067 -34.43559 -33.72641 -30.97753 -29.52589 -27.46022 -26.42927 -25.92436 -24.79587 -23.27118 -21.76835 -21.17428 -19.44954 -19.05679 -17.43457 -17.13235 -16.93409 -16.55775 -16.19077 -15.61967 -15.47514 -15.26572 -14.70893 -14.54912 -14.13150 -13.83352 -13.58129 -13.34130 -13.30705 -13.20077 -12.86940 -12.79749 -12.63926 -12.46811 -12.32562 -12.25081 -12.13415 -11.89885 -11.65249 -11.60799 -11.40118 -10.94928 -10.66269 -10.18302 -9.72014 -8.98753 -7.93269 -5.20304 0.36714 1.44729 1.48193 1.53632 2.18439 2.27962 2.56544 3.40691 3.42138 3.58140 3.82162 3.90597 3.98081 4.00722 4.21019 4.23268 4.36076 4.43152 4.64973 4.72975 4.73754 4.75569 4.79692 4.85121 4.89486 5.00589 5.01458 5.03844 5.08334 5.10395 5.20472 5.36008 5.38289 5.39529 5.46577 5.52820 5.61215 5.74896 6.29552 6.62013 7.28706 7.35323 8.13434 8.34747 9.30221 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021487 B = 0.003858 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.815107 B = 7255.761815 C = 8205.930127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.181 4.181 3 C 0.538 3.462 4 O -0.593 6.593 5 N -0.710 5.710 6 C 0.133 3.867 7 C -0.115 4.115 8 C 0.164 3.836 9 H 0.041 0.959 10 C -0.152 4.152 11 N -0.736 5.736 12 C -0.236 4.236 13 H 0.074 0.926 14 C -0.078 4.078 15 N -0.971 5.971 16 Si 0.968 3.032 17 H -0.282 1.282 18 H -0.297 1.297 19 H -0.275 1.275 20 C -0.083 4.083 21 C -0.121 4.121 22 C -0.133 4.133 23 C -0.085 4.085 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.415 0.585 28 H 0.049 0.951 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.032 0.968 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.371 0.629 36 H 0.249 0.751 37 H 0.047 0.953 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.121 0.879 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.769 -18.044 10.308 24.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.184 4.184 3 C 0.328 3.672 4 O -0.475 6.475 5 N -0.363 5.363 6 C 0.009 3.991 7 C -0.153 4.153 8 C 0.055 3.945 9 H 0.059 0.941 10 C -0.212 4.212 11 N -0.377 5.377 12 C -0.368 4.368 13 H 0.092 0.908 14 C -0.270 4.270 15 N -0.622 5.622 16 Si 0.797 3.203 17 H -0.209 1.209 18 H -0.223 1.223 19 H -0.201 1.201 20 C -0.085 4.085 21 C -0.158 4.158 22 C -0.170 4.170 23 C -0.122 4.122 24 H 0.097 0.903 25 H 0.108 0.892 26 H 0.095 0.905 27 H 0.253 0.747 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.203 0.797 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.099 0.901 41 H 0.139 0.861 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.800 -17.894 10.381 23.816 hybrid contribution 0.981 0.943 -0.848 1.604 sum -10.818 -16.951 9.533 22.254 Atomic orbital electron populations 1.20720 0.87401 1.04356 1.03408 1.20625 0.97772 0.89561 1.10408 1.19056 0.87010 0.85462 0.75656 1.90769 1.16061 1.88500 1.52213 1.45848 1.11002 1.04948 1.74492 1.21086 0.94971 0.82676 1.00339 1.21917 0.97295 0.92171 1.03944 1.20460 0.92346 0.93257 0.88398 0.94064 1.22255 0.99018 0.98661 1.01292 1.42654 1.29579 1.56323 1.09111 1.19584 1.02084 1.19623 0.95530 0.90822 1.25505 1.02717 1.02842 0.95919 1.69806 1.42776 1.48466 1.01122 0.85287 0.79866 0.79009 0.76101 1.20874 1.22316 1.20141 1.23729 0.98210 0.95571 0.91015 1.22314 0.94222 0.97530 1.01774 1.22705 0.97057 0.97051 1.00183 1.22303 0.98582 0.88226 1.03043 0.90348 0.89183 0.90453 0.74671 0.93298 0.94872 0.90952 0.87562 0.94838 0.93564 0.90493 0.79696 0.94271 0.93407 0.88238 0.88353 0.90104 0.86111 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 9.57 71.23 0.68 -0.77 16 2 C -0.18 -4.34 6.00 -18.70 -0.11 -4.45 16 3 C 0.54 17.96 7.75 86.57 0.67 18.63 16 4 O -0.59 -25.94 15.15 -4.07 -0.06 -26.00 16 5 N -0.71 -20.54 5.50 -466.72 -2.57 -23.11 16 6 C 0.13 4.76 5.56 86.38 0.48 5.24 16 7 C -0.11 -3.43 4.87 30.59 0.15 -3.28 16 8 C 0.16 6.28 2.89 44.99 0.13 6.41 16 9 H 0.04 1.64 8.08 -2.39 -0.02 1.62 16 10 C -0.15 -5.08 9.49 71.98 0.68 -4.39 16 11 N -0.74 -37.47 4.57 -322.93 -1.48 -38.95 16 12 C -0.24 -13.47 9.93 84.03 0.83 -12.63 16 13 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 14 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 15 N -0.97 -61.56 13.06 21.65 0.28 -61.28 16 16 Si 0.97 48.04 29.55 68.60 2.03 50.06 16 17 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 18 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 20 C -0.08 -1.86 6.60 -17.17 -0.11 -1.98 16 21 C -0.12 -2.90 6.99 30.05 0.21 -2.69 16 22 C -0.13 -2.07 8.17 30.94 0.25 -1.82 16 23 C -0.09 -1.11 7.72 30.17 0.23 -0.88 16 24 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.09 0.90 7.91 -2.39 -0.02 0.88 16 26 H 0.08 0.90 6.70 -2.39 -0.02 0.88 16 27 H 0.41 8.47 6.57 -92.71 -0.61 7.86 16 28 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.03 1.52 7.75 -2.39 -0.02 1.51 16 30 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.03 1.23 8.14 -2.38 -0.02 1.22 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.37 20.45 7.80 -92.71 -0.72 19.72 16 36 H 0.25 15.40 8.31 -92.72 -0.77 14.63 16 37 H 0.05 1.50 7.49 -2.39 -0.02 1.48 16 38 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -76.87 346.33 2.44 -74.43 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: -0.33 Total: 31.63 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 4.57 Total: -6.78 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -3.76 Total: -123.34 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.06 Total: -26.00 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.06 kcal Total: -76.87 2.44 -74.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480763507.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.085 kcal (2) G-P(sol) polarization free energy of solvation -76.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds