Wall clock time and date at job start Mon Mar 30 2020 19:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46541 * 2 1 4 4 C 1.52999 * 109.47137 * 240.00148 * 2 1 3 5 5 C 1.50701 * 109.47230 * 64.99845 * 4 2 1 6 6 O 1.21275 * 119.99942 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99893 * 180.02562 * 5 4 2 8 8 C 1.46508 * 119.99872 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.46970 * 179.97438 * 8 7 5 10 10 C 1.53952 * 113.73810 * 86.26234 * 9 8 7 11 11 N 1.47808 * 86.03517 * 90.88018 * 10 9 8 12 12 C 1.36933 * 134.45725 * 204.64095 * 11 10 9 13 13 H 1.07996 * 120.00846 * 173.35075 * 12 11 10 14 14 C 1.38814 * 119.99714 * 353.35046 * 12 11 10 15 15 N 1.31625 * 120.00245 * 5.06241 * 14 12 11 16 16 Si 1.86809 * 120.00055 * 185.06239 * 14 12 11 17 17 H 1.48500 * 109.46973 * 94.98689 * 16 14 12 18 18 H 1.48500 * 109.47017 * 214.98741 * 16 14 12 19 19 H 1.48499 * 109.46841 * 334.98626 * 16 14 12 20 20 C 1.47582 * 91.05267 * 24.54774 * 11 10 9 21 21 C 1.52992 * 109.46926 * 120.00158 * 2 1 3 22 22 C 1.53000 * 117.49840 * 248.62295 * 21 2 1 23 23 C 1.52997 * 60.00141 * 252.51075 * 22 21 2 24 24 H 1.08994 * 109.47408 * 300.00014 * 1 2 3 25 25 H 1.09000 * 109.46845 * 60.00408 * 1 2 3 26 26 H 1.09009 * 109.47025 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47045 * 305.00052 * 4 2 1 28 28 H 1.09000 * 109.47057 * 185.00248 * 4 2 1 29 29 H 0.96998 * 120.00722 * 0.02562 * 7 5 4 30 30 H 1.08997 * 109.46684 * 60.00132 * 8 7 5 31 31 H 1.08993 * 109.47022 * 299.99793 * 8 7 5 32 32 H 1.09000 * 112.94442 * 314.66815 * 9 8 7 33 33 H 1.09004 * 113.76381 * 205.14682 * 10 9 8 34 34 H 1.09003 * 113.76793 * 336.53894 * 10 9 8 35 35 H 0.96995 * 119.99775 * 180.02562 * 15 14 12 36 36 H 1.08997 * 113.76639 * 221.14963 * 20 11 10 37 37 H 1.08998 * 113.76570 * 89.75452 * 20 11 10 38 38 H 1.09003 * 115.55725 * 34.33220 * 21 2 1 39 39 H 1.08999 * 117.49936 * 359.97438 * 22 21 2 40 40 H 1.08999 * 117.50447 * 145.02277 * 22 21 2 41 41 H 1.08995 * 117.50049 * 252.50528 * 23 22 21 42 42 H 1.09006 * 117.50080 * 107.48896 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 8 1.0110 1.0869 -2.3633 7 7 1.9845 -0.3919 -3.7002 8 6 1.5964 0.3645 -4.8934 9 6 2.1065 -0.3567 -6.1426 10 6 1.1485 -1.4421 -6.6663 11 7 0.5577 -0.3737 -7.4994 12 6 -0.6672 -0.1760 -8.0787 13 1 -0.8893 0.7619 -8.5658 14 6 -1.6237 -1.1813 -8.0399 15 7 -1.3911 -2.2852 -7.3618 16 14 -3.2409 -0.9676 -8.9502 17 1 -3.1422 -1.6005 -10.2900 18 1 -4.3328 -1.6124 -8.1774 19 1 -3.5332 0.4799 -9.1068 20 6 1.8166 0.3952 -7.4542 21 6 2.0400 -0.7213 1.2492 22 6 2.7418 0.1226 2.3151 23 6 3.5550 -0.8281 1.4343 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.6054 -1.7198 -1.2952 28 1 3.1264 -0.7995 -1.2056 29 1 2.4877 -1.2161 -3.7909 30 1 2.0310 1.3630 -4.8478 31 1 0.5101 0.4426 -4.9366 32 1 3.1395 -0.6916 -6.0479 33 1 1.6435 -2.2247 -7.2414 34 1 0.4715 -1.8340 -5.9071 35 1 -2.0593 -2.9878 -7.3350 36 1 1.6719 1.4676 -7.3231 37 1 2.5081 0.1535 -8.2613 38 1 1.4311 -1.5586 1.5902 39 1 2.8407 1.1915 2.1262 40 1 2.5947 -0.1593 3.3577 41 1 3.9428 -1.7354 1.8973 42 1 4.1884 -0.3845 0.6660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481669320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:26 Heat of formation + Delta-G solvation = 25.577441 kcal Electronic energy + Delta-G solvation = -20178.027112 eV Core-core repulsion = 17160.151215 eV Total energy + Delta-G solvation = -3017.875897 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.78854 -38.29632 -37.61960 -34.21086 -33.12058 -32.13074 -29.09330 -27.64379 -25.56776 -24.78244 -23.47437 -22.54503 -22.19402 -20.42416 -19.70956 -18.58741 -16.77427 -16.68818 -16.01507 -15.60881 -15.28032 -14.83816 -14.69920 -14.10262 -13.79790 -13.66814 -13.00936 -12.92325 -12.65741 -12.48145 -11.91462 -11.76396 -11.47027 -11.34130 -11.28512 -11.05754 -10.99576 -10.85520 -10.70039 -10.47230 -10.34639 -10.10335 -9.91036 -9.72978 -9.50793 -9.33291 -8.76934 -8.62024 -6.84436 -5.76046 -3.06759 2.93678 3.41162 3.42376 3.46494 3.48445 3.67958 4.47942 4.49429 4.69892 4.75164 4.90631 5.07473 5.16143 5.22869 5.36087 5.37089 5.40427 5.45230 5.49971 5.64029 5.65719 5.70024 5.80195 5.91917 5.99915 6.00957 6.08706 6.18259 6.33321 6.34990 6.49206 6.55228 6.65272 6.72363 6.86388 7.21568 7.30377 7.58729 7.84108 8.00046 8.54806 9.06849 9.73247 10.62783 11.41717 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027523 B = 0.003702 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.088672 B = 7562.592093 C = 8080.045167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.043 4.043 3 H 0.077 0.923 4 C -0.135 4.135 5 C 0.508 3.492 6 O -0.543 6.543 7 N -0.724 5.724 8 C 0.148 3.852 9 C -0.156 4.156 10 C 0.169 3.831 11 N -0.611 5.611 12 C -0.223 4.223 13 H 0.080 0.920 14 C -0.007 4.007 15 N -0.920 5.920 16 Si 0.908 3.092 17 H -0.290 1.290 18 H -0.291 1.291 19 H -0.280 1.280 20 C 0.126 3.874 21 C -0.147 4.147 22 C -0.180 4.180 23 C -0.183 4.183 24 H 0.050 0.950 25 H 0.079 0.921 26 H 0.048 0.952 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.398 0.602 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.070 0.930 35 H 0.253 0.747 36 H 0.045 0.955 37 H 0.037 0.963 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.040 0.951 15.714 19.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.062 4.062 3 H 0.095 0.905 4 C -0.175 4.175 5 C 0.295 3.705 6 O -0.421 6.421 7 N -0.375 5.375 8 C 0.025 3.975 9 C -0.176 4.176 10 C 0.044 3.956 11 N -0.338 5.338 12 C -0.351 4.351 13 H 0.097 0.903 14 C -0.204 4.204 15 N -0.567 5.567 16 Si 0.739 3.261 17 H -0.217 1.217 18 H -0.217 1.217 19 H -0.205 1.205 20 C 0.000 4.000 21 C -0.165 4.165 22 C -0.217 4.217 23 C -0.220 4.220 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.231 0.769 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.239 1.626 15.689 18.805 hybrid contribution -0.560 -0.578 -0.748 1.099 sum 9.679 1.048 14.941 17.833 Atomic orbital electron populations 1.21928 0.94186 1.01601 1.03120 1.20438 0.96651 0.98672 0.90411 0.90484 1.21732 1.02608 1.00496 0.92705 1.20621 0.79380 0.85842 0.84677 1.90659 1.39793 1.24946 1.86683 1.46077 1.57518 1.27709 1.06162 1.21047 1.01314 0.93430 0.81693 1.23466 0.98660 1.00763 0.94681 1.22282 0.90672 0.90047 0.92636 1.46029 1.06580 1.20689 1.60473 1.19036 0.87745 0.98950 1.29340 0.90264 1.24800 0.98723 0.96112 1.00716 1.69826 1.34950 1.07636 1.44252 0.86152 0.83212 0.77442 0.79335 1.21698 1.21721 1.20533 1.22528 0.88835 0.95939 0.92735 1.22425 0.94519 1.01850 0.97683 1.22998 1.04824 0.97706 0.96186 1.22955 0.94123 1.01701 1.03262 0.93039 0.90262 0.93252 0.88861 0.89204 0.76867 0.92450 0.90148 0.91614 0.95450 0.91140 0.93732 0.93718 0.94593 0.87794 0.88813 0.89059 0.88953 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.92 37.16 0.33 -1.53 16 2 C -0.04 -0.47 2.19 -90.62 -0.20 -0.67 16 3 H 0.08 0.95 7.71 -51.93 -0.40 0.55 16 4 C -0.14 -1.46 5.09 -27.88 -0.14 -1.61 16 5 C 0.51 7.63 7.55 -10.99 -0.08 7.55 16 6 O -0.54 -10.22 13.96 5.56 0.08 -10.15 16 7 N -0.72 -10.59 5.56 -60.29 -0.33 -10.93 16 8 C 0.15 2.63 5.42 -4.04 -0.02 2.61 16 9 C -0.16 -2.78 3.99 -89.69 -0.36 -3.13 16 10 C 0.17 3.86 6.94 -2.84 -0.02 3.84 16 11 N -0.61 -15.60 3.58 -177.70 -0.64 -16.24 16 12 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 13 H 0.08 2.19 7.83 -52.49 -0.41 1.77 16 14 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 15 N -0.92 -27.39 11.51 55.49 0.64 -26.75 16 16 Si 0.91 22.48 29.56 -169.99 -5.02 17.46 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 C 0.13 2.54 8.51 -2.97 -0.03 2.52 16 21 C -0.15 -1.31 5.15 -90.62 -0.47 -1.78 16 22 C -0.18 -1.47 10.18 -26.73 -0.27 -1.74 16 23 C -0.18 -1.44 9.67 -26.73 -0.26 -1.69 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 1.22 5.95 -51.93 -0.31 0.91 16 26 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.09 0.78 7.12 -51.93 -0.37 0.41 16 29 H 0.40 4.71 8.47 -40.82 -0.35 4.37 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.78 7.98 -51.93 -0.41 1.36 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.78 7.32 -51.93 -0.38 1.40 16 35 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.04 0.86 8.10 -51.93 -0.42 0.44 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.89 8.11 -51.93 -0.42 0.47 16 39 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.72 7.58 -51.93 -0.39 0.33 16 LS Contribution 341.12 15.07 5.14 5.14 Total: -1.00 -32.52 341.12 -9.13 -41.65 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.22 Total: 2.26 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.77 Total: -2.45 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.33 Total: -53.92 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.52 -9.13 -41.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481669320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.228 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds