Wall clock time and date at job start Mon Mar 30 2020 19:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47317 * 2 1 4 4 C 1.53007 * 109.47209 * 119.99924 * 2 1 3 5 5 N 1.46499 * 109.46855 * 295.00246 * 4 2 1 6 6 C 1.36936 * 119.99323 * 180.02562 * 5 4 2 7 7 H 1.07993 * 120.00669 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99469 * 179.97438 * 6 5 4 9 9 N 1.31619 * 119.99681 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00291 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47190 * 90.00009 * 10 8 6 12 12 H 1.48505 * 109.47221 * 210.00040 * 10 8 6 13 13 H 1.48497 * 109.46976 * 330.00101 * 10 8 6 14 14 C 1.52999 * 109.47271 * 239.99747 * 2 1 3 15 15 N 1.46508 * 109.46749 * 65.00447 * 14 2 1 16 16 C 1.34781 * 119.99604 * 180.02562 * 15 14 2 17 17 O 1.21273 * 120.00243 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99643 * 179.97438 * 16 15 14 19 19 C 1.53008 * 110.34429 * 302.28794 * 18 16 15 20 20 C 1.51097 * 110.38780 * 64.69277 * 18 16 15 21 21 C 1.30528 * 111.10203 * 102.37290 * 20 18 16 22 22 C 1.51106 * 111.10324 * 0.02562 * 21 20 18 23 23 C 1.54627 * 110.38632 * 180.02562 * 18 16 15 24 24 H 1.08997 * 109.47317 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47086 * 299.99933 * 1 2 3 26 26 H 1.08998 * 109.47252 * 59.99647 * 1 2 3 27 27 H 1.09000 * 109.46847 * 55.00243 * 4 2 1 28 28 H 1.09000 * 109.46875 * 174.99647 * 4 2 1 29 29 H 0.96997 * 119.99991 * 359.97438 * 5 4 2 30 30 H 0.97007 * 119.99993 * 180.02562 * 9 8 6 31 31 H 1.08993 * 109.47368 * 305.00484 * 14 2 1 32 32 H 1.09007 * 109.47260 * 184.99740 * 14 2 1 33 33 H 0.96997 * 119.99640 * 359.97438 * 15 14 2 34 34 H 1.09000 * 109.46583 * 297.71259 * 19 18 16 35 35 H 1.08991 * 109.47172 * 57.71282 * 19 18 16 36 36 H 1.08992 * 109.46921 * 177.71629 * 19 18 16 37 37 H 1.07996 * 124.45390 * 282.39697 * 20 18 16 38 38 H 1.07997 * 124.44973 * 180.26405 * 21 20 18 39 39 H 1.09003 * 110.38579 * 135.24581 * 22 21 20 40 40 H 1.09001 * 110.38515 * 257.50826 * 22 21 20 41 41 H 1.09002 * 111.04087 * 147.78771 * 23 18 16 42 42 H 1.09002 * 111.07318 * 23.86834 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 0.0354 2.4424 6 6 2.0019 -0.4203 3.6855 7 1 2.5630 -1.3375 3.7864 8 6 1.6351 0.2969 4.8160 9 7 1.9707 -0.1413 6.0109 10 14 0.6653 1.8838 4.6415 11 1 -0.7883 1.5809 4.6659 12 1 1.0001 2.7947 5.7656 13 1 1.0131 2.5374 3.3543 14 6 2.0400 -0.7213 -1.2492 15 7 1.6525 0.0354 -2.4424 16 6 1.9956 -0.4136 -3.6660 17 8 2.6256 -1.4437 -3.7793 18 6 1.5965 0.3645 -4.8933 19 6 0.0769 0.5352 -4.9441 20 6 2.2807 1.7116 -4.9081 21 6 3.2908 1.7166 -5.7348 22 6 3.4484 0.3738 -6.4095 23 6 2.1010 -0.3473 -6.1700 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6054 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2056 29 1 1.1488 0.8594 2.3517 30 1 1.7140 0.3596 6.8009 31 1 1.6054 -1.7198 -1.2951 32 1 3.1264 -0.7995 -1.2055 33 1 1.1483 0.8591 -2.3517 34 1 -0.3965 -0.4440 -5.0158 35 1 -0.2627 1.0375 -4.0384 36 1 -0.1926 1.1336 -5.8143 37 1 1.9744 2.5589 -4.3127 38 1 3.9323 2.5675 -5.9103 39 1 3.6254 0.5038 -7.4772 40 1 4.2660 -0.1859 -5.9552 41 1 1.4177 -0.1864 -7.0038 42 1 2.2527 -1.4118 -5.9912 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482132738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:30 Heat of formation + Delta-G solvation = -20.775251 kcal Electronic energy + Delta-G solvation = -20261.382735 eV Core-core repulsion = 17241.496835 eV Total energy + Delta-G solvation = -3019.885900 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.76149 -38.08238 -36.77410 -34.52758 -32.71111 -31.64714 -30.45658 -29.19347 -26.74819 -25.81861 -25.03173 -22.59582 -21.58023 -20.46097 -19.93698 -18.99827 -17.62074 -17.14792 -16.25272 -15.63257 -15.37861 -14.91254 -14.40110 -14.33447 -13.92294 -13.52498 -13.40019 -13.16980 -12.72270 -12.55827 -12.47495 -12.25565 -12.15522 -12.11892 -11.48847 -11.44248 -11.41109 -11.08209 -11.05011 -10.78018 -10.62305 -10.59019 -10.17301 -10.06078 -9.59428 -9.14507 -9.04764 -8.91038 -7.24274 -5.77581 -3.13217 1.84177 2.62180 3.15834 3.34892 3.36972 3.43267 4.16083 4.31355 4.57265 4.57534 4.71525 4.86227 4.95165 5.07067 5.09785 5.19935 5.22928 5.37828 5.38290 5.52821 5.53820 5.62576 5.65726 5.72932 5.74979 5.82062 5.87230 5.91248 6.01688 6.08587 6.13708 6.22888 6.41546 6.44960 6.52020 6.65045 6.74464 7.44712 7.98956 8.16619 8.41431 9.20283 9.92350 10.12149 11.40961 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036330 B = 0.003466 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.536121 B = 8075.920858 C = 8247.606880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.075 0.925 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.091 0.909 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.126 3.874 15 N -0.722 5.722 16 C 0.528 3.472 17 O -0.539 6.539 18 C -0.059 4.059 19 C -0.136 4.136 20 C -0.165 4.165 21 C -0.147 4.147 22 C -0.104 4.104 23 C -0.107 4.107 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.044 0.956 27 H 0.031 0.969 28 H 0.029 0.971 29 H 0.361 0.639 30 H 0.259 0.741 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.399 0.601 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.771 4.557 -26.558 27.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 H 0.093 0.907 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.582 5.582 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.003 3.997 15 N -0.373 5.373 16 C 0.313 3.687 17 O -0.416 6.416 18 C -0.063 4.063 19 C -0.193 4.193 20 C -0.183 4.183 21 C -0.165 4.165 22 C -0.141 4.141 23 C -0.145 4.145 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.194 0.806 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.233 0.767 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.213 3.639 -26.429 26.770 hybrid contribution -0.892 1.722 0.256 1.956 sum -3.105 5.361 -26.174 26.897 Atomic orbital electron populations 1.21807 0.94782 1.02278 1.01154 1.21602 0.96615 1.00535 0.94620 0.90652 1.20552 0.97194 0.94241 0.84297 1.42685 1.67896 1.27079 1.02357 1.19073 1.29523 1.07046 0.81735 0.89164 1.24677 1.00826 0.98616 0.95096 1.69704 1.51306 1.40300 0.96933 0.86545 0.80436 0.84635 0.76889 1.21053 1.21693 1.20417 1.21397 1.00258 0.95292 0.82793 1.46033 1.57657 1.27771 1.05870 1.20287 0.78966 0.85137 0.84293 1.90675 1.39904 1.24566 1.86474 1.20649 0.97192 0.94058 0.94368 1.21800 0.92227 1.02565 1.02753 1.23050 0.98188 0.96237 1.00812 1.23414 0.97343 0.98158 0.97614 1.21422 0.98520 0.93718 1.00456 1.22479 0.96159 1.01098 0.94767 0.92327 0.91871 0.93674 0.95099 0.95294 0.80646 0.93046 0.91181 0.91253 0.76650 0.91811 0.92044 0.91292 0.85270 0.85436 0.90938 0.90132 0.90521 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.94 37.15 0.33 -1.58 16 2 C -0.11 -1.65 2.46 -90.62 -0.22 -1.87 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 4 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 5 N -0.75 -17.76 5.13 -59.91 -0.31 -18.07 16 6 C -0.24 -6.95 10.47 -15.06 -0.16 -7.10 16 7 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 8 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 9 N -0.93 -29.52 13.97 55.49 0.78 -28.75 16 10 Si 0.88 21.97 27.73 -169.99 -4.71 17.26 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 14 C 0.13 1.68 5.07 -4.04 -0.02 1.66 16 15 N -0.72 -8.18 5.14 -60.29 -0.31 -8.49 16 16 C 0.53 6.57 6.54 -10.98 -0.07 6.50 16 17 O -0.54 -8.71 15.46 5.56 0.09 -8.63 16 18 C -0.06 -0.55 0.74 -155.76 -0.12 -0.67 16 19 C -0.14 -0.99 8.41 37.16 0.31 -0.68 16 20 C -0.16 -1.38 9.37 -35.70 -0.33 -1.72 16 21 C -0.15 -1.21 10.78 -35.70 -0.38 -1.60 16 22 C -0.10 -0.89 6.81 -26.80 -0.18 -1.07 16 23 C -0.11 -0.97 6.03 -24.99 -0.15 -1.12 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.96 7.18 -51.93 -0.37 0.58 16 26 H 0.04 0.48 7.18 -51.93 -0.37 0.10 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.36 8.19 4.71 -40.82 -0.19 8.00 16 30 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.40 3.65 6.96 -40.82 -0.28 3.36 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.40 7.45 -51.93 -0.39 0.01 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.55 7.91 -51.93 -0.41 0.14 16 42 H 0.09 0.98 6.95 -51.93 -0.36 0.62 16 LS Contribution 337.18 15.07 5.08 5.08 Total: -1.00 -33.28 337.18 -7.55 -40.83 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.05 Total: 6.90 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -1.11 Total: -6.13 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.16 Total: -55.31 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.26 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.28 -7.55 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482132738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.052 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds