Wall clock time and date at job start Mon Mar 30 2020 19:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47317 * 2 1 4 4 C 1.53007 * 109.47209 * 119.99924 * 2 1 3 5 5 N 1.46499 * 109.46855 * 295.00246 * 4 2 1 6 6 C 1.36936 * 119.99323 * 180.02562 * 5 4 2 7 7 H 1.07993 * 120.00669 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99469 * 179.97438 * 6 5 4 9 9 N 1.31619 * 119.99681 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00291 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47190 * 90.00009 * 10 8 6 12 12 H 1.48505 * 109.47221 * 210.00040 * 10 8 6 13 13 H 1.48497 * 109.46976 * 330.00101 * 10 8 6 14 14 C 1.52999 * 109.47271 * 239.99747 * 2 1 3 15 15 N 1.46508 * 109.46749 * 65.00447 * 14 2 1 16 16 C 1.34781 * 119.99604 * 180.02562 * 15 14 2 17 17 O 1.21273 * 120.00243 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99643 * 179.97438 * 16 15 14 19 19 C 1.53008 * 110.34429 * 302.28794 * 18 16 15 20 20 C 1.51097 * 110.38780 * 64.69277 * 18 16 15 21 21 C 1.30528 * 111.10203 * 102.37290 * 20 18 16 22 22 C 1.51106 * 111.10324 * 0.02562 * 21 20 18 23 23 C 1.54627 * 110.38632 * 180.02562 * 18 16 15 24 24 H 1.08997 * 109.47317 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47086 * 299.99933 * 1 2 3 26 26 H 1.08998 * 109.47252 * 59.99647 * 1 2 3 27 27 H 1.09000 * 109.46847 * 55.00243 * 4 2 1 28 28 H 1.09000 * 109.46875 * 174.99647 * 4 2 1 29 29 H 0.96997 * 119.99991 * 359.97438 * 5 4 2 30 30 H 0.97007 * 119.99993 * 180.02562 * 9 8 6 31 31 H 1.08993 * 109.47368 * 305.00484 * 14 2 1 32 32 H 1.09007 * 109.47260 * 184.99740 * 14 2 1 33 33 H 0.96997 * 119.99640 * 359.97438 * 15 14 2 34 34 H 1.09000 * 109.46583 * 297.71259 * 19 18 16 35 35 H 1.08991 * 109.47172 * 57.71282 * 19 18 16 36 36 H 1.08992 * 109.46921 * 177.71629 * 19 18 16 37 37 H 1.07996 * 124.45390 * 282.39697 * 20 18 16 38 38 H 1.07997 * 124.44973 * 180.26405 * 21 20 18 39 39 H 1.09003 * 110.38579 * 135.24581 * 22 21 20 40 40 H 1.09001 * 110.38515 * 257.50826 * 22 21 20 41 41 H 1.09002 * 111.04087 * 147.78771 * 23 18 16 42 42 H 1.09002 * 111.07318 * 23.86834 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 0.0354 2.4424 6 6 2.0019 -0.4203 3.6855 7 1 2.5630 -1.3375 3.7864 8 6 1.6351 0.2969 4.8160 9 7 1.9707 -0.1413 6.0109 10 14 0.6653 1.8838 4.6415 11 1 -0.7883 1.5809 4.6659 12 1 1.0001 2.7947 5.7656 13 1 1.0131 2.5374 3.3543 14 6 2.0400 -0.7213 -1.2492 15 7 1.6525 0.0354 -2.4424 16 6 1.9956 -0.4136 -3.6660 17 8 2.6256 -1.4437 -3.7793 18 6 1.5965 0.3645 -4.8933 19 6 0.0769 0.5352 -4.9441 20 6 2.2807 1.7116 -4.9081 21 6 3.2908 1.7166 -5.7348 22 6 3.4484 0.3738 -6.4095 23 6 2.1010 -0.3473 -6.1700 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6054 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2056 29 1 1.1488 0.8594 2.3517 30 1 1.7140 0.3596 6.8009 31 1 1.6054 -1.7198 -1.2951 32 1 3.1264 -0.7995 -1.2055 33 1 1.1483 0.8591 -2.3517 34 1 -0.3965 -0.4440 -5.0158 35 1 -0.2627 1.0375 -4.0384 36 1 -0.1926 1.1336 -5.8143 37 1 1.9744 2.5589 -4.3127 38 1 3.9323 2.5675 -5.9103 39 1 3.6254 0.5038 -7.4772 40 1 4.2660 -0.1859 -5.9552 41 1 1.4177 -0.1864 -7.0038 42 1 2.2527 -1.4118 -5.9912 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482132738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:30 Heat of formation + Delta-G solvation = -43.080046 kcal Electronic energy + Delta-G solvation = -20262.349944 eV Core-core repulsion = 17241.496835 eV Total energy + Delta-G solvation = -3020.853109 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.62154 -39.03454 -38.03690 -36.06750 -34.25012 -32.78169 -31.94925 -29.85578 -27.90500 -27.29112 -25.83061 -24.17758 -22.80176 -21.64885 -20.82680 -20.01042 -19.37181 -18.03152 -17.30783 -16.66246 -16.49320 -16.28506 -15.72425 -15.53638 -15.40355 -14.92504 -14.38240 -14.21746 -14.01725 -13.81545 -13.61151 -13.30119 -13.15995 -12.87936 -12.84625 -12.74848 -12.28143 -12.20485 -12.10314 -12.01612 -11.99741 -11.78789 -11.69926 -11.65949 -11.01889 -10.99083 -10.10892 -9.83832 -9.31569 -8.03636 -5.38070 1.19036 1.36999 1.42324 1.49605 1.69147 2.21257 2.48379 3.27523 3.50132 3.53900 3.64769 3.80280 3.91917 4.01315 4.08178 4.12497 4.31585 4.46253 4.50918 4.56752 4.67027 4.74479 4.81748 4.82418 4.91087 4.94507 5.01012 5.02236 5.08157 5.12716 5.23183 5.27695 5.34620 5.38844 5.47511 5.52890 5.74283 5.93052 6.19998 6.54584 7.06832 7.23745 7.81431 8.02754 9.18131 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036330 B = 0.003466 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.536121 B = 8075.920858 C = 8247.606880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.086 0.914 4 C 0.159 3.841 5 N -0.753 5.753 6 C -0.240 4.240 7 H 0.052 0.948 8 C -0.066 4.066 9 N -0.986 5.986 10 Si 0.959 3.041 11 H -0.275 1.275 12 H -0.296 1.296 13 H -0.247 1.247 14 C 0.136 3.864 15 N -0.710 5.710 16 C 0.523 3.477 17 O -0.584 6.584 18 C -0.057 4.057 19 C -0.134 4.134 20 C -0.169 4.169 21 C -0.151 4.151 22 C -0.108 4.108 23 C -0.111 4.111 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.025 0.975 28 H 0.021 0.979 29 H 0.369 0.631 30 H 0.259 0.741 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.413 0.587 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.414 7.295 -28.883 30.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.105 0.895 4 C 0.032 3.968 5 N -0.400 5.400 6 C -0.371 4.371 7 H 0.070 0.930 8 C -0.257 4.257 9 N -0.636 5.636 10 Si 0.786 3.214 11 H -0.201 1.201 12 H -0.223 1.223 13 H -0.171 1.171 14 C 0.011 3.989 15 N -0.362 5.362 16 C 0.310 3.690 17 O -0.464 6.464 18 C -0.060 4.060 19 C -0.191 4.191 20 C -0.187 4.187 21 C -0.169 4.169 22 C -0.145 4.145 23 C -0.148 4.148 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.043 0.957 28 H 0.039 0.961 29 H 0.203 0.797 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.251 0.749 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.167 0.833 38 H 0.163 0.837 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.874 6.397 -28.810 29.765 hybrid contribution -0.294 0.733 0.947 1.233 sum -4.168 7.129 -27.863 29.061 Atomic orbital electron populations 1.21802 0.93450 1.02394 1.02204 1.21384 0.97523 1.00311 0.92391 0.89534 1.20699 0.96836 0.94246 0.84980 1.42615 1.67836 1.27655 1.01849 1.19041 1.28281 1.05691 0.84050 0.92976 1.25590 1.02636 1.03035 0.94489 1.69904 1.53368 1.42360 0.97999 0.85348 0.78736 0.79402 0.77945 1.20083 1.22257 1.17110 1.21121 0.99363 0.95143 0.83246 1.45878 1.57388 1.27971 1.04955 1.20961 0.78001 0.84741 0.85279 1.90661 1.41896 1.26669 1.87132 1.20679 0.98810 0.94082 0.92404 1.21827 0.90291 1.02765 1.04237 1.23219 0.98180 0.96080 1.01196 1.23623 0.97538 0.98263 0.97467 1.21446 0.97591 0.93897 1.01554 1.22509 0.97015 0.99716 0.95602 0.92791 0.93215 0.90151 0.95728 0.96078 0.79730 0.93260 0.91970 0.92590 0.74926 0.92391 0.90809 0.89557 0.83317 0.83706 0.89194 0.92244 0.88428 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.94 71.98 0.64 -2.71 16 2 C -0.10 -2.58 2.46 -10.79 -0.03 -2.61 16 3 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 4 C 0.16 5.98 5.65 86.38 0.49 6.47 16 5 N -0.75 -34.80 5.13 -343.45 -1.76 -36.57 16 6 C -0.24 -13.87 10.47 84.03 0.88 -12.99 16 7 H 0.05 3.34 8.06 -2.91 -0.02 3.31 16 8 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 9 N -0.99 -63.81 13.97 21.65 0.30 -63.51 16 10 Si 0.96 44.70 27.73 68.60 1.90 46.60 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 12 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 13 H -0.25 -10.12 6.52 99.48 0.65 -9.47 16 14 C 0.14 3.44 5.07 86.38 0.44 3.88 16 15 N -0.71 -14.48 5.14 -463.04 -2.38 -16.86 16 16 C 0.52 12.37 6.54 87.66 0.57 12.94 16 17 O -0.58 -19.03 15.46 -3.01 -0.05 -19.08 16 18 C -0.06 -0.92 0.74 -52.99 -0.04 -0.96 16 19 C -0.13 -1.51 8.41 71.98 0.61 -0.91 16 20 C -0.17 -2.31 9.37 26.26 0.25 -2.06 16 21 C -0.15 -2.11 10.78 26.26 0.28 -1.83 16 22 C -0.11 -1.72 6.81 30.55 0.21 -1.51 16 23 C -0.11 -1.86 6.03 31.72 0.19 -1.67 16 24 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.05 1.34 7.18 -2.39 -0.02 1.32 16 26 H 0.08 1.34 7.18 -2.39 -0.02 1.33 16 27 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.37 15.80 4.71 -92.71 -0.44 15.36 16 30 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.58 8.14 -2.38 -0.02 1.57 16 33 H 0.41 6.00 6.96 -92.71 -0.65 5.35 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.65 7.45 -2.39 -0.02 0.63 16 36 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.10 1.20 7.91 -2.39 -0.02 1.18 16 42 H 0.07 1.46 6.95 -2.39 -0.02 1.44 16 Total: -1.00 -74.11 337.18 2.83 -71.28 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -0.14 Total: 25.55 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 4.96 Total: -7.42 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -3.84 Total: -116.94 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.05 Total: -19.08 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.90 Total: 46.60 kcal Total: -74.11 2.83 -71.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482132738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.202 kcal (2) G-P(sol) polarization free energy of solvation -74.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds