Wall clock time and date at job start Mon Mar 30 2020 19:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 5 5 N 1.46490 * 109.47559 * 295.00069 * 4 2 1 6 6 C 1.36935 * 120.00279 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99907 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00242 * 180.02562 * 6 5 4 9 9 N 1.31621 * 119.99782 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99950 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47204 * 89.99610 * 10 8 6 12 12 H 1.48503 * 109.46743 * 209.99902 * 10 8 6 13 13 H 1.48498 * 109.46771 * 329.99611 * 10 8 6 14 14 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 15 15 N 1.46498 * 109.47059 * 64.99625 * 14 2 1 16 16 C 1.34777 * 119.99828 * 179.72339 * 15 14 2 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 14 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 14 19 19 C 1.53003 * 110.34264 * 57.71114 * 18 16 15 20 20 C 1.51101 * 110.38496 * 295.30944 * 18 16 15 21 21 C 1.30528 * 111.10235 * 257.62311 * 20 18 16 22 22 C 1.51102 * 111.10244 * 359.97438 * 21 20 18 23 23 C 1.54629 * 110.39105 * 180.02562 * 18 16 15 24 24 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 25 25 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 26 26 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46886 * 55.00501 * 4 2 1 28 28 H 1.09002 * 109.46923 * 174.99751 * 4 2 1 29 29 H 0.97002 * 120.00315 * 0.02562 * 5 4 2 30 30 H 0.97001 * 119.99327 * 179.97438 * 9 8 6 31 31 H 1.09004 * 109.47066 * 304.99893 * 14 2 1 32 32 H 1.08994 * 109.46974 * 185.00040 * 14 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 15 14 2 34 34 H 1.09007 * 109.46573 * 60.70343 * 19 18 16 35 35 H 1.08998 * 109.46977 * 180.70124 * 19 18 16 36 36 H 1.08997 * 109.47117 * 300.70739 * 19 18 16 37 37 H 1.08002 * 124.44928 * 77.60151 * 20 18 16 38 38 H 1.07998 * 124.44779 * 180.02562 * 21 20 18 39 39 H 1.09002 * 110.38982 * 224.75420 * 22 21 20 40 40 H 1.08997 * 110.48159 * 102.43121 * 22 21 20 41 41 H 1.08998 * 111.04043 * 212.20707 * 23 18 16 42 42 H 1.08999 * 111.03739 * 336.14836 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.6525 0.0355 2.4424 6 6 2.0011 -0.4205 3.6856 7 1 2.5622 -1.3378 3.7866 8 6 1.6335 0.2962 4.8161 9 7 1.9682 -0.1425 6.0111 10 14 0.6625 1.8825 4.6416 11 1 -0.7909 1.5784 4.6655 12 1 0.9963 2.7934 5.7659 13 1 1.0103 2.5365 3.3546 14 6 2.0400 -0.7213 -1.2492 15 7 1.6524 0.0353 -2.4423 16 6 2.0008 -0.4106 -3.6656 17 8 2.6308 -1.4407 -3.7789 18 6 1.6075 0.3708 -4.8927 19 6 2.1607 1.7953 -4.8161 20 6 0.1040 0.3949 -5.0419 21 6 -0.2912 -0.4501 -5.9548 22 6 0.8828 -1.1781 -6.5671 23 6 2.1174 -0.3377 -6.1690 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6054 -1.7197 1.2953 28 1 3.1263 -0.7993 1.2057 29 1 1.1483 0.8592 2.3518 30 1 1.7115 0.3586 6.8010 31 1 1.6054 -1.7199 -1.2950 32 1 3.1263 -0.7995 -1.2055 33 1 1.1488 0.8593 -2.3518 34 1 3.2489 1.7600 -4.7634 35 1 1.8578 2.3509 -5.7036 36 1 1.7697 2.2896 -3.9269 37 1 -0.5568 1.0279 -4.4682 38 1 -1.3219 -0.6076 -6.2362 39 1 0.7824 -1.2161 -7.6518 40 1 0.9621 -2.1855 -6.1585 41 1 2.3646 0.3857 -6.9459 42 1 2.9711 -0.9778 -5.9466 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482132745.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:37 Heat of formation + Delta-G solvation = -20.832982 kcal Electronic energy + Delta-G solvation = -20267.664697 eV Core-core repulsion = 17247.776294 eV Total energy + Delta-G solvation = -3019.888403 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.76400 -38.08623 -36.77470 -34.52746 -32.71551 -31.64362 -30.45139 -29.20585 -26.75968 -25.80671 -25.02981 -22.59697 -21.58008 -20.44693 -19.96405 -18.98979 -17.62248 -17.13976 -16.21707 -15.80656 -15.23221 -14.90016 -14.42492 -14.36052 -13.90427 -13.52695 -13.39075 -13.18522 -12.74530 -12.53817 -12.43890 -12.23557 -12.22050 -12.10767 -11.47638 -11.46034 -11.39903 -11.09875 -11.03701 -10.77948 -10.62443 -10.58705 -10.17056 -10.06720 -9.59405 -9.14805 -9.04773 -8.91065 -7.24262 -5.77593 -3.13213 1.83594 2.62022 3.15861 3.34888 3.36997 3.43274 4.15772 4.31236 4.57092 4.57527 4.71391 4.86174 4.94876 5.08015 5.09373 5.19785 5.23317 5.37380 5.38453 5.52909 5.53694 5.62486 5.65835 5.72982 5.75282 5.82167 5.87931 5.90356 6.01683 6.08980 6.12837 6.23091 6.41613 6.45024 6.51470 6.64971 6.74493 7.44663 7.98940 8.16597 8.41456 9.20292 9.92365 10.12136 11.40963 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.038803 B = 0.003457 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.415705 B = 8097.166845 C = 8325.569345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 H 0.075 0.925 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.091 0.909 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.126 3.874 15 N -0.722 5.722 16 C 0.528 3.472 17 O -0.539 6.539 18 C -0.059 4.059 19 C -0.136 4.136 20 C -0.164 4.164 21 C -0.147 4.147 22 C -0.104 4.104 23 C -0.108 4.108 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.031 0.969 28 H 0.029 0.971 29 H 0.361 0.639 30 H 0.259 0.741 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.399 0.601 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.050 3.789 -26.638 27.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.582 5.582 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.003 3.997 15 N -0.373 5.373 16 C 0.313 3.687 17 O -0.416 6.416 18 C -0.063 4.063 19 C -0.194 4.194 20 C -0.182 4.182 21 C -0.165 4.165 22 C -0.141 4.141 23 C -0.145 4.145 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.194 0.806 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.233 0.767 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.475 2.880 -26.508 26.890 hybrid contribution -1.081 1.607 0.243 1.952 sum -4.557 4.487 -26.265 27.033 Atomic orbital electron populations 1.21806 0.94797 1.02272 1.01141 1.21603 0.96612 1.00530 0.94617 0.90632 1.20549 0.97199 0.94235 0.84297 1.42684 1.67884 1.27094 1.02355 1.19074 1.29517 1.07052 0.81729 0.89168 1.24677 1.00822 0.98622 0.95094 1.69705 1.51338 1.40269 0.96930 0.86545 0.80444 0.84627 0.76894 1.21059 1.21692 1.20406 1.21395 1.00246 0.95312 0.82791 1.46029 1.57516 1.27883 1.05889 1.20290 0.78764 0.85383 0.84250 1.90678 1.40080 1.24418 1.86453 1.20651 0.94601 0.96603 0.94415 1.21804 1.01423 0.93403 1.02746 1.23050 0.94130 1.00898 1.00147 1.23406 0.99269 0.96352 0.97515 1.21398 0.92490 0.99691 1.00526 1.22462 0.98838 0.98747 0.94476 0.91886 0.93666 0.92356 0.95121 0.95276 0.80647 0.93046 0.91235 0.91198 0.76650 0.91799 0.91285 0.92019 0.85288 0.85454 0.90944 0.90144 0.90517 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.94 37.16 0.33 -1.60 16 2 C -0.11 -1.65 2.46 -90.62 -0.22 -1.87 16 3 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 4 C 0.16 3.13 5.65 -4.05 -0.02 3.11 16 5 N -0.75 -17.76 5.13 -59.91 -0.31 -18.06 16 6 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 7 H 0.09 2.76 8.06 -52.48 -0.42 2.33 16 8 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 9 N -0.93 -29.52 13.97 55.49 0.78 -28.75 16 10 Si 0.88 21.96 27.74 -169.99 -4.71 17.25 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 13 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 14 C 0.13 1.68 5.06 -4.04 -0.02 1.66 16 15 N -0.72 -8.18 5.15 -60.30 -0.31 -8.49 16 16 C 0.53 6.57 6.54 -10.98 -0.07 6.50 16 17 O -0.54 -8.71 15.46 5.55 0.09 -8.63 16 18 C -0.06 -0.55 0.74 -155.76 -0.12 -0.67 16 19 C -0.14 -1.01 8.39 37.16 0.31 -0.69 16 20 C -0.16 -1.35 9.37 -35.70 -0.33 -1.69 16 21 C -0.15 -1.19 10.78 -35.70 -0.38 -1.58 16 22 C -0.10 -0.88 6.80 -26.87 -0.18 -1.06 16 23 C -0.11 -0.97 6.02 -25.06 -0.15 -1.12 16 24 H 0.06 0.96 7.18 -51.93 -0.37 0.59 16 25 H 0.04 0.49 7.18 -51.93 -0.37 0.11 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.36 8.19 4.71 -40.82 -0.19 8.00 16 30 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.40 3.64 6.99 -40.82 -0.29 3.36 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.41 7.49 -51.93 -0.39 0.02 16 37 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.56 7.91 -51.93 -0.41 0.14 16 42 H 0.09 0.98 6.94 -51.93 -0.36 0.62 16 LS Contribution 337.23 15.07 5.08 5.08 Total: -1.00 -33.26 337.23 -7.55 -40.82 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -7.05 Total: 6.88 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -1.12 Total: -6.10 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.16 Total: -55.30 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.25 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.26 -7.55 -40.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482132745.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.984 kcal (2) G-P(sol) polarization free energy of solvation -33.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds