Wall clock time and date at job start Mon Mar 30 2020 19:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 5 5 N 1.46490 * 109.47559 * 295.00069 * 4 2 1 6 6 C 1.36935 * 120.00279 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99907 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00242 * 180.02562 * 6 5 4 9 9 N 1.31621 * 119.99782 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99950 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47204 * 89.99610 * 10 8 6 12 12 H 1.48503 * 109.46743 * 209.99902 * 10 8 6 13 13 H 1.48498 * 109.46771 * 329.99611 * 10 8 6 14 14 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 15 15 N 1.46498 * 109.47059 * 64.99625 * 14 2 1 16 16 C 1.34777 * 119.99828 * 179.72339 * 15 14 2 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 14 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 14 19 19 C 1.53003 * 110.34264 * 57.71114 * 18 16 15 20 20 C 1.51101 * 110.38496 * 295.30944 * 18 16 15 21 21 C 1.30528 * 111.10235 * 257.62311 * 20 18 16 22 22 C 1.51102 * 111.10244 * 359.97438 * 21 20 18 23 23 C 1.54629 * 110.39105 * 180.02562 * 18 16 15 24 24 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 25 25 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 26 26 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46886 * 55.00501 * 4 2 1 28 28 H 1.09002 * 109.46923 * 174.99751 * 4 2 1 29 29 H 0.97002 * 120.00315 * 0.02562 * 5 4 2 30 30 H 0.97001 * 119.99327 * 179.97438 * 9 8 6 31 31 H 1.09004 * 109.47066 * 304.99893 * 14 2 1 32 32 H 1.08994 * 109.46974 * 185.00040 * 14 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 15 14 2 34 34 H 1.09007 * 109.46573 * 60.70343 * 19 18 16 35 35 H 1.08998 * 109.46977 * 180.70124 * 19 18 16 36 36 H 1.08997 * 109.47117 * 300.70739 * 19 18 16 37 37 H 1.08002 * 124.44928 * 77.60151 * 20 18 16 38 38 H 1.07998 * 124.44779 * 180.02562 * 21 20 18 39 39 H 1.09002 * 110.38982 * 224.75420 * 22 21 20 40 40 H 1.08997 * 110.48159 * 102.43121 * 22 21 20 41 41 H 1.08998 * 111.04043 * 212.20707 * 23 18 16 42 42 H 1.08999 * 111.03739 * 336.14836 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.6525 0.0355 2.4424 6 6 2.0011 -0.4205 3.6856 7 1 2.5622 -1.3378 3.7866 8 6 1.6335 0.2962 4.8161 9 7 1.9682 -0.1425 6.0111 10 14 0.6625 1.8825 4.6416 11 1 -0.7909 1.5784 4.6655 12 1 0.9963 2.7934 5.7659 13 1 1.0103 2.5365 3.3546 14 6 2.0400 -0.7213 -1.2492 15 7 1.6524 0.0353 -2.4423 16 6 2.0008 -0.4106 -3.6656 17 8 2.6308 -1.4407 -3.7789 18 6 1.6075 0.3708 -4.8927 19 6 2.1607 1.7953 -4.8161 20 6 0.1040 0.3949 -5.0419 21 6 -0.2912 -0.4501 -5.9548 22 6 0.8828 -1.1781 -6.5671 23 6 2.1174 -0.3377 -6.1690 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6054 -1.7197 1.2953 28 1 3.1263 -0.7993 1.2057 29 1 1.1483 0.8592 2.3518 30 1 1.7115 0.3586 6.8010 31 1 1.6054 -1.7199 -1.2950 32 1 3.1263 -0.7995 -1.2055 33 1 1.1488 0.8593 -2.3518 34 1 3.2489 1.7600 -4.7634 35 1 1.8578 2.3509 -5.7036 36 1 1.7697 2.2896 -3.9269 37 1 -0.5568 1.0279 -4.4682 38 1 -1.3219 -0.6076 -6.2362 39 1 0.7824 -1.2161 -7.6518 40 1 0.9621 -2.1855 -6.1585 41 1 2.3646 0.3857 -6.9459 42 1 2.9711 -0.9778 -5.9466 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482132745.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:37 Heat of formation + Delta-G solvation = -43.129014 kcal Electronic energy + Delta-G solvation = -20268.631526 eV Core-core repulsion = 17247.776294 eV Total energy + Delta-G solvation = -3020.855232 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.62180 -39.03542 -38.03720 -36.06671 -34.25182 -32.78670 -31.93988 -29.86039 -27.91516 -27.29219 -25.82367 -24.17866 -22.80010 -21.64341 -20.83746 -20.00479 -19.36394 -18.02252 -17.27375 -16.81056 -16.49734 -16.10702 -15.78065 -15.57812 -15.35908 -14.93132 -14.39614 -14.22676 -13.99722 -13.80407 -13.65119 -13.23309 -13.21894 -12.88266 -12.85267 -12.73960 -12.27731 -12.19260 -12.08651 -12.06080 -11.97400 -11.78586 -11.69418 -11.66955 -11.02149 -10.98892 -10.10984 -9.83154 -9.31493 -8.03588 -5.38000 1.19877 1.37079 1.42428 1.49727 1.68982 2.21411 2.48459 3.27606 3.50131 3.53899 3.65260 3.80059 3.91816 4.01561 4.07637 4.12659 4.31980 4.47042 4.50586 4.56825 4.66995 4.74179 4.81598 4.82394 4.90812 4.94650 5.00657 5.02134 5.08204 5.12632 5.22385 5.27828 5.34494 5.38647 5.47420 5.53259 5.74323 5.94048 6.20087 6.54577 7.06924 7.23762 7.81524 8.02817 9.18200 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.038803 B = 0.003457 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.415705 B = 8097.166845 C = 8325.569345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.088 0.912 4 C 0.159 3.841 5 N -0.753 5.753 6 C -0.240 4.240 7 H 0.052 0.948 8 C -0.066 4.066 9 N -0.986 5.986 10 Si 0.959 3.041 11 H -0.275 1.275 12 H -0.296 1.296 13 H -0.246 1.246 14 C 0.136 3.864 15 N -0.710 5.710 16 C 0.523 3.477 17 O -0.584 6.584 18 C -0.057 4.057 19 C -0.134 4.134 20 C -0.168 4.168 21 C -0.150 4.150 22 C -0.108 4.108 23 C -0.111 4.111 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.024 0.976 28 H 0.022 0.978 29 H 0.369 0.631 30 H 0.259 0.741 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.413 0.587 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.937 6.412 -28.981 30.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.106 0.894 4 C 0.032 3.968 5 N -0.400 5.400 6 C -0.371 4.371 7 H 0.070 0.930 8 C -0.258 4.258 9 N -0.636 5.636 10 Si 0.786 3.214 11 H -0.201 1.201 12 H -0.223 1.223 13 H -0.171 1.171 14 C 0.011 3.989 15 N -0.362 5.362 16 C 0.310 3.690 17 O -0.464 6.464 18 C -0.060 4.060 19 C -0.192 4.192 20 C -0.186 4.186 21 C -0.168 4.168 22 C -0.145 4.145 23 C -0.149 4.149 24 H 0.068 0.932 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.203 0.797 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.251 0.749 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.168 0.832 38 H 0.164 0.836 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.378 5.525 -28.907 29.918 hybrid contribution -0.412 0.649 0.939 1.213 sum -5.790 6.173 -27.968 29.221 Atomic orbital electron populations 1.21800 0.93546 1.02303 1.02185 1.21387 0.97452 1.00378 0.92385 0.89390 1.20696 0.96880 0.94199 0.84979 1.42613 1.67826 1.27670 1.01843 1.19040 1.28275 1.05692 0.84046 0.92992 1.25593 1.02635 1.03052 0.94486 1.69905 1.53402 1.42334 0.97999 0.85347 0.78716 0.79393 0.77971 1.20116 1.22252 1.17058 1.21118 0.99458 0.95055 0.83247 1.45873 1.57249 1.28079 1.04971 1.20965 0.77797 0.84987 0.85240 1.90664 1.42075 1.26529 1.87114 1.20680 0.95760 0.97093 0.92456 1.21830 1.00919 0.92183 1.04239 1.23212 0.93332 1.01495 1.00536 1.23613 0.99869 0.95892 0.97411 1.21421 0.92755 0.98625 1.01666 1.22492 0.98220 0.98992 0.95200 0.93197 0.90184 0.92936 0.95831 0.95985 0.79726 0.93262 0.92223 0.92348 0.74921 0.92583 0.89519 0.90820 0.83208 0.83612 0.89217 0.92209 0.88492 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.94 71.98 0.64 -2.73 16 2 C -0.10 -2.58 2.46 -10.79 -0.03 -2.61 16 3 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 4 C 0.16 5.98 5.65 86.38 0.49 6.47 16 5 N -0.75 -34.78 5.13 -343.46 -1.76 -36.54 16 6 C -0.24 -13.86 10.47 84.03 0.88 -12.98 16 7 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 8 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 9 N -0.99 -63.82 13.97 21.65 0.30 -63.51 16 10 Si 0.96 44.68 27.74 68.60 1.90 46.58 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 12 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 13 H -0.25 -10.08 6.52 99.48 0.65 -9.43 16 14 C 0.14 3.44 5.06 86.38 0.44 3.88 16 15 N -0.71 -14.47 5.15 -463.07 -2.38 -16.86 16 16 C 0.52 12.37 6.54 87.66 0.57 12.95 16 17 O -0.58 -19.06 15.46 -3.04 -0.05 -19.11 16 18 C -0.06 -0.93 0.74 -52.99 -0.04 -0.97 16 19 C -0.13 -1.58 8.39 71.98 0.60 -0.97 16 20 C -0.17 -2.22 9.37 26.26 0.25 -1.97 16 21 C -0.15 -2.02 10.78 26.26 0.28 -1.73 16 22 C -0.11 -1.68 6.80 30.51 0.21 -1.47 16 23 C -0.11 -1.88 6.02 31.68 0.19 -1.69 16 24 H 0.05 1.35 7.18 -2.39 -0.02 1.33 16 25 H 0.08 1.36 7.18 -2.39 -0.02 1.35 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.37 15.78 4.71 -92.71 -0.44 15.35 16 30 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 31 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.41 5.99 6.99 -92.71 -0.65 5.34 16 34 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 0.69 7.49 -2.39 -0.02 0.67 16 37 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 38 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.10 1.20 7.91 -2.39 -0.02 1.18 16 42 H 0.07 1.45 6.94 -2.39 -0.02 1.44 16 Total: -1.00 -74.12 337.23 2.82 -71.30 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: -0.15 Total: 25.44 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 4.96 Total: -7.30 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -3.84 Total: -116.91 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.05 Total: -19.11 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.90 Total: 46.58 kcal Total: -74.12 2.82 -71.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482132745.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.169 kcal (2) G-P(sol) polarization free energy of solvation -74.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds