Wall clock time and date at job start Mon Mar 30 2020 19:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47132 * 2 1 4 4 C 1.52997 * 109.47231 * 240.00171 * 2 1 3 5 5 N 1.46497 * 109.47508 * 64.99681 * 4 2 1 6 6 C 1.36936 * 120.00216 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99833 * 0.02562 * 6 5 4 8 8 C 1.38807 * 119.99934 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00106 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99956 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47121 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47414 * 119.99772 * 10 8 6 13 13 H 1.48501 * 109.47459 * 240.00126 * 10 8 6 14 14 C 1.52996 * 109.47387 * 119.99743 * 2 1 3 15 15 N 1.46506 * 109.47126 * 295.00221 * 14 2 1 16 16 C 1.34781 * 119.99647 * 179.97438 * 15 14 2 17 17 O 1.21275 * 120.00234 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.99411 * 179.97438 * 16 15 14 19 19 H 1.09000 * 115.58163 * 325.77399 * 18 16 15 20 20 C 1.53126 * 117.51488 * 111.54177 * 18 16 15 21 21 C 1.52459 * 117.51175 * 180.02562 * 18 16 15 22 22 C 1.53260 * 128.58747 * 134.95397 * 21 18 16 23 23 C 1.53889 * 86.97989 * 194.93106 * 22 21 18 24 24 C 1.53447 * 128.65734 * 10.17735 * 21 18 16 25 25 H 1.09007 * 109.47010 * 300.00167 * 1 2 3 26 26 H 1.09004 * 109.47403 * 59.99982 * 1 2 3 27 27 H 1.08994 * 109.46999 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47228 * 185.00475 * 4 2 1 29 29 H 1.09002 * 109.47008 * 304.99586 * 4 2 1 30 30 H 0.96997 * 119.99621 * 0.02562 * 5 4 2 31 31 H 0.97001 * 119.99978 * 180.02562 * 9 8 6 32 32 H 1.09000 * 109.47594 * 175.00240 * 14 2 1 33 33 H 1.09002 * 109.46927 * 54.99668 * 14 2 1 34 34 H 0.96993 * 119.99657 * 0.02562 * 15 14 2 35 35 H 1.09004 * 117.50883 * 359.97438 * 20 18 16 36 36 H 1.08991 * 117.55075 * 214.88282 * 20 18 16 37 37 H 1.09002 * 113.64852 * 80.38772 * 22 21 18 38 38 H 1.08999 * 113.64512 * 309.47402 * 22 21 18 39 39 H 1.09005 * 113.58717 * 139.53029 * 23 22 21 40 40 H 1.08999 * 113.59117 * 270.34026 * 23 22 21 41 41 H 1.08995 * 113.56108 * 50.51775 * 24 21 18 42 42 H 1.09000 * 113.78120 * 279.55299 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6524 0.0353 -2.4424 6 6 2.0020 -0.4203 -3.6855 7 1 2.5631 -1.3376 -3.7864 8 6 1.6352 0.2968 -4.8160 9 7 0.9518 1.4150 -4.6930 10 14 2.1114 -0.3250 -6.5118 11 1 2.8703 -1.5945 -6.3784 12 1 0.8847 -0.5643 -7.3139 13 1 2.9572 0.6888 -7.1914 14 6 2.0400 -0.7212 1.2492 15 7 1.6524 0.0355 2.4424 16 6 1.9956 -0.4135 3.6660 17 8 2.6257 -1.4435 3.7793 18 6 1.5974 0.3651 4.8932 19 1 1.5828 1.4490 4.7787 20 6 0.5533 -0.2622 5.8211 21 6 2.0157 -0.1940 6.2485 22 6 2.6293 0.5482 7.4407 23 6 3.0062 -0.8338 8.0029 24 6 2.9795 -1.3486 6.5530 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1264 -0.7995 -1.2055 29 1 1.6054 -1.7198 -1.2951 30 1 1.1488 0.8594 -2.3517 31 1 0.6952 1.9159 -5.4830 32 1 3.1263 -0.7994 1.2056 33 1 1.6054 -1.7197 1.2952 34 1 1.1482 0.8591 2.3517 35 1 0.1544 -1.2379 5.5434 36 1 -0.1480 0.4085 6.3173 37 1 1.8976 1.0822 8.0470 38 1 3.4902 1.1626 7.1771 39 1 3.9960 -0.8642 8.4585 40 1 2.2348 -1.2724 8.6359 41 1 3.9377 -1.2627 6.0408 42 1 2.5298 -2.3359 6.4479 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482145738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:44 Heat of formation + Delta-G solvation = 8.134056 kcal Electronic energy + Delta-G solvation = -19706.272231 eV Core-core repulsion = 16687.639933 eV Total energy + Delta-G solvation = -3018.632298 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.46865 -38.66566 -36.73030 -34.31808 -33.87937 -32.39789 -30.03762 -26.81661 -25.89486 -25.60063 -23.76283 -23.29421 -22.17731 -20.46720 -19.73022 -18.57301 -17.38647 -16.83612 -16.16185 -15.52845 -15.44200 -14.98617 -14.77543 -14.29752 -14.09391 -13.58384 -13.13374 -12.84799 -12.71420 -12.54656 -12.34019 -12.17208 -12.03539 -11.78682 -11.68241 -11.06129 -10.91900 -10.70711 -10.58934 -10.55659 -10.39803 -10.32553 -10.03115 -10.01738 -9.75118 -9.59727 -8.98162 -8.88216 -6.92297 -5.77337 -3.05632 2.47669 3.11542 3.43465 3.49393 3.51511 3.54298 4.16042 4.36700 4.52213 4.54526 4.59432 4.65540 4.92018 5.08293 5.12176 5.23231 5.32377 5.39844 5.40097 5.46578 5.57627 5.57874 5.63934 5.69677 5.82622 5.92866 5.97576 6.00878 6.07307 6.12175 6.18614 6.26028 6.39827 6.52421 6.65582 6.77734 6.87251 7.54371 7.70957 8.26010 8.41910 9.53213 10.10580 10.45424 11.45806 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.058278 B = 0.002742 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.342838 B =10210.840355 C =10430.095517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.071 0.929 8 C -0.016 4.016 9 N -0.935 5.935 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.127 3.873 15 N -0.722 5.722 16 C 0.540 3.460 17 O -0.539 6.539 18 C -0.180 4.180 19 H 0.122 0.878 20 C -0.122 4.122 21 C -0.127 4.127 22 C -0.099 4.099 23 C -0.143 4.143 24 C -0.082 4.082 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.021 0.979 29 H 0.022 0.978 30 H 0.384 0.616 31 H 0.254 0.746 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.400 0.600 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.318 -0.583 24.921 24.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.368 4.368 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.004 3.996 15 N -0.373 5.373 16 C 0.326 3.674 17 O -0.416 6.416 18 C -0.201 4.201 19 H 0.140 0.860 20 C -0.159 4.159 21 C -0.128 4.128 22 C -0.136 4.136 23 C -0.180 4.180 24 C -0.119 4.119 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.218 0.782 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.235 0.765 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.220 -1.452 24.843 24.886 hybrid contribution -0.259 0.558 -1.229 1.374 sum -0.038 -0.894 23.614 23.631 Atomic orbital electron populations 1.21786 0.94665 1.01909 1.01478 1.21550 0.96720 1.00483 0.94203 0.90568 1.20575 0.96594 0.94203 0.85392 1.42350 1.66919 1.27683 1.00610 1.19288 1.28516 1.05395 0.83651 0.91100 1.24739 1.01076 0.97426 0.97885 1.69666 1.43691 1.16632 1.28369 0.86105 0.77591 0.77838 0.84604 1.20538 1.21878 1.21876 1.21404 1.00050 0.95233 0.82956 1.46026 1.57543 1.27977 1.05791 1.19605 0.79113 0.85032 0.83661 1.90685 1.39825 1.24483 1.86618 1.22174 1.07514 0.99950 0.90435 0.86015 1.22792 0.90713 1.02425 1.00004 1.22325 0.96943 1.00417 0.93105 1.22506 1.00107 0.96529 0.94483 1.22816 1.01628 0.96624 0.96944 1.22350 0.98681 0.96594 0.94297 0.93878 0.91177 0.92859 0.96150 0.96011 0.78215 0.93584 0.91447 0.91457 0.76520 0.88052 0.87664 0.91301 0.89612 0.91266 0.90196 0.89416 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.94 37.16 0.33 -1.77 16 2 C -0.11 -1.72 2.46 -90.62 -0.22 -1.94 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.16 3.22 5.65 -4.04 -0.02 3.20 16 5 N -0.73 -18.43 5.33 -59.91 -0.32 -18.75 16 6 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 7 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 8 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 9 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 10 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 C 0.13 1.79 5.06 -4.04 -0.02 1.77 16 15 N -0.72 -8.67 5.28 -60.29 -0.32 -8.99 16 16 C 0.54 6.99 7.61 -10.98 -0.08 6.91 16 17 O -0.54 -8.84 15.15 5.56 0.08 -8.76 16 18 C -0.18 -1.74 6.19 -91.98 -0.57 -2.31 16 19 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 20 C -0.12 -1.02 10.24 -26.92 -0.28 -1.30 16 21 C -0.13 -1.19 2.89 -154.67 -0.45 -1.63 16 22 C -0.10 -0.74 8.09 -26.13 -0.21 -0.95 16 23 C -0.14 -1.07 8.08 -25.81 -0.21 -1.28 16 24 C -0.08 -0.83 6.49 -26.04 -0.17 -1.00 16 25 H 0.04 0.52 7.18 -51.93 -0.37 0.15 16 26 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.38 10.05 6.85 -40.82 -0.28 9.77 16 31 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.40 3.92 7.65 -40.82 -0.31 3.61 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 343.93 15.07 5.18 5.18 Total: -1.00 -32.20 343.93 -9.03 -41.24 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -7.22 Total: 7.77 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.14 Total: -7.68 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.09 Total: -55.27 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.08 Total: -8.76 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.20 -9.03 -41.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482145738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.371 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds