Wall clock time and date at job start Mon Mar 30 2020 19:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47041 * 2 1 4 4 C 1.52995 * 109.47305 * 120.00358 * 2 1 3 5 5 N 1.46502 * 109.47173 * 295.00071 * 4 2 1 6 6 C 1.36941 * 119.99929 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00066 * 359.97438 * 6 5 4 8 8 C 1.38816 * 119.99853 * 179.97438 * 6 5 4 9 9 N 1.31617 * 119.99866 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99709 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47025 * 90.00610 * 10 8 6 12 12 H 1.48505 * 109.46693 * 209.99685 * 10 8 6 13 13 H 1.48495 * 109.47157 * 329.99897 * 10 8 6 14 14 C 1.52996 * 109.46727 * 240.00246 * 2 1 3 15 15 N 1.46506 * 109.47126 * 65.00097 * 14 2 1 16 16 C 1.34781 * 119.99647 * 179.97438 * 15 14 2 17 17 O 1.21275 * 120.00234 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.99411 * 179.97438 * 16 15 14 19 19 H 1.09000 * 115.58163 * 325.77399 * 18 16 15 20 20 C 1.53126 * 117.51488 * 111.54177 * 18 16 15 21 21 C 1.52459 * 117.51175 * 180.02562 * 18 16 15 22 22 C 1.53260 * 128.58747 * 134.95397 * 21 18 16 23 23 C 1.53889 * 86.97989 * 194.93106 * 22 21 18 24 24 C 1.53447 * 128.65734 * 10.17735 * 21 18 16 25 25 H 1.09001 * 109.47041 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46881 * 299.99388 * 1 2 3 27 27 H 1.08993 * 109.47194 * 59.99719 * 1 2 3 28 28 H 1.09004 * 109.47061 * 54.99854 * 4 2 1 29 29 H 1.08997 * 109.47392 * 174.99696 * 4 2 1 30 30 H 0.97001 * 119.99866 * 0.02562 * 5 4 2 31 31 H 0.96999 * 119.99928 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.47594 * 305.00117 * 14 2 1 33 33 H 1.09002 * 109.46927 * 184.99544 * 14 2 1 34 34 H 0.96993 * 119.99657 * 0.02562 * 15 14 2 35 35 H 1.09004 * 117.50883 * 359.97438 * 20 18 16 36 36 H 1.08991 * 117.55075 * 214.88282 * 20 18 16 37 37 H 1.09002 * 113.64852 * 80.38772 * 22 21 18 38 38 H 1.08999 * 113.64512 * 309.47402 * 22 21 18 39 39 H 1.09005 * 113.58717 * 139.53029 * 23 22 21 40 40 H 1.08999 * 113.59117 * 270.34026 * 23 22 21 41 41 H 1.08995 * 113.56108 * 50.51775 * 24 21 18 42 42 H 1.09000 * 113.78120 * 279.55299 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6525 0.0352 2.4424 6 6 2.0012 -0.4210 3.6855 7 1 2.5615 -1.3388 3.7864 8 6 1.6344 0.2961 4.8161 9 7 1.9691 -0.1427 6.0110 10 14 0.6659 1.8838 4.6415 11 1 -0.7879 1.5819 4.6654 12 1 1.0008 2.7941 5.7661 13 1 1.0148 2.5375 3.3547 14 6 2.0399 -0.7212 -1.2493 15 7 1.6523 0.0355 -2.4424 16 6 1.9963 -0.4129 -3.6660 17 8 2.6262 -1.4430 -3.7793 18 6 1.5971 0.3652 -4.8932 19 1 0.6363 0.8765 -4.8344 20 6 2.7118 1.0441 -5.6940 21 6 2.0152 -0.1940 -6.2486 22 6 1.1794 -0.3288 -7.5261 23 6 2.2755 -1.2756 -8.0460 24 6 2.6180 -1.5670 -6.5744 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.6054 -1.7199 1.2950 29 1 3.1264 -0.7996 1.2055 30 1 1.1483 0.8589 2.3518 31 1 1.7132 0.3586 6.8010 32 1 1.6053 -1.7197 -1.2953 33 1 3.1263 -0.7994 -1.2057 34 1 1.1489 0.8596 -2.3516 35 1 3.7336 0.9282 -5.3326 36 1 2.4846 2.0018 -6.1622 37 1 1.0965 0.5978 -8.0941 38 1 0.2177 -0.8174 -7.3698 39 1 1.8860 -2.1406 -8.5828 40 1 3.0725 -0.7651 -8.5866 41 1 2.0571 -2.4005 -6.1517 42 1 3.6883 -1.6345 -6.3797 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482145741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:56 Heat of formation + Delta-G solvation = 12.708531 kcal Electronic energy + Delta-G solvation = -19775.057589 eV Core-core repulsion = 16756.623654 eV Total energy + Delta-G solvation = -3018.433934 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.52307 -38.73224 -36.88937 -34.45599 -33.92648 -32.43399 -30.52833 -26.95473 -25.97807 -25.85553 -23.73490 -23.32225 -21.86500 -20.56210 -19.93510 -18.63360 -17.68377 -17.04087 -16.26170 -15.54886 -15.43922 -15.27098 -14.67751 -14.28509 -14.25244 -13.73892 -13.27900 -12.92155 -12.74746 -12.53236 -12.47653 -12.27390 -12.18057 -11.82941 -11.71801 -11.45662 -11.05732 -10.78760 -10.64608 -10.62642 -10.56265 -10.36591 -10.13597 -10.06596 -9.72537 -9.58281 -9.05999 -8.90966 -7.24202 -5.77438 -3.13088 2.41786 3.04193 3.35108 3.37186 3.43398 3.49489 4.11115 4.32427 4.47468 4.50497 4.57651 4.61747 4.82091 4.93455 5.08272 5.09164 5.23735 5.27352 5.35851 5.42503 5.52979 5.53955 5.60623 5.64727 5.66013 5.73187 5.87490 5.89073 5.90738 6.03612 6.08924 6.15084 6.22974 6.41565 6.45001 6.64942 6.74468 7.46356 7.99018 8.19334 8.41528 9.20353 9.92441 10.12226 11.41060 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.050723 B = 0.002957 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.887989 B = 9467.486978 C = 9733.268410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.076 0.924 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.090 0.910 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.128 3.872 15 N -0.724 5.724 16 C 0.540 3.460 17 O -0.537 6.537 18 C -0.180 4.180 19 H 0.121 0.879 20 C -0.122 4.122 21 C -0.127 4.127 22 C -0.099 4.099 23 C -0.143 4.143 24 C -0.082 4.082 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.031 0.969 29 H 0.029 0.971 30 H 0.361 0.639 31 H 0.259 0.741 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.400 0.600 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.562 3.027 -28.250 28.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.373 4.373 7 H 0.108 0.892 8 C -0.193 4.193 9 N -0.582 5.582 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.004 3.996 15 N -0.375 5.375 16 C 0.326 3.674 17 O -0.414 6.414 18 C -0.201 4.201 19 H 0.139 0.861 20 C -0.159 4.159 21 C -0.127 4.127 22 C -0.136 4.136 23 C -0.180 4.180 24 C -0.119 4.119 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.194 0.806 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.234 0.766 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.000 2.115 -28.122 28.272 hybrid contribution -1.043 1.706 0.326 2.026 sum -3.043 3.822 -27.795 28.221 Atomic orbital electron populations 1.21809 0.94784 1.02260 1.01177 1.21604 0.96621 1.00553 0.94609 0.90613 1.20550 0.97196 0.94237 0.84304 1.42690 1.67882 1.27103 1.02358 1.19070 1.29551 1.07008 0.81721 0.89170 1.24681 1.00840 0.98624 0.95106 1.69701 1.51334 1.40254 0.96923 0.86543 0.80422 0.84639 0.76895 1.21064 1.21707 1.20397 1.21382 1.00225 0.95268 0.82740 1.46019 1.57881 1.27780 1.05814 1.19608 0.79097 0.85058 0.83622 1.90693 1.39889 1.24206 1.86587 1.22169 1.01144 1.05265 0.91544 0.86064 1.22798 0.96752 0.95853 1.00547 1.22328 1.01703 0.96635 0.92067 1.22507 0.97543 0.99890 0.93692 1.22816 0.98748 0.99524 0.96916 1.22353 1.01158 0.94450 0.93975 0.92362 0.91879 0.93636 0.95115 0.95282 0.80642 0.93050 0.91221 0.91256 0.76603 0.88008 0.87656 0.91300 0.89621 0.91243 0.90174 0.89408 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.94 37.16 0.33 -1.60 16 2 C -0.11 -1.65 2.46 -90.62 -0.22 -1.87 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 5 N -0.75 -17.79 5.13 -59.91 -0.31 -18.10 16 6 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 7 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 8 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 9 N -0.93 -29.51 13.97 55.49 0.78 -28.74 16 10 Si 0.88 22.00 27.73 -169.99 -4.71 17.28 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.28 -6.44 6.52 56.52 0.37 -6.08 16 14 C 0.13 1.69 5.06 -4.04 -0.02 1.66 16 15 N -0.72 -8.12 5.28 -60.29 -0.32 -8.44 16 16 C 0.54 6.67 7.61 -10.98 -0.08 6.58 16 17 O -0.54 -8.53 15.15 5.56 0.08 -8.44 16 18 C -0.18 -1.65 6.19 -91.98 -0.57 -2.22 16 19 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 20 C -0.12 -0.98 10.24 -26.92 -0.28 -1.26 16 21 C -0.13 -1.13 2.89 -154.67 -0.45 -1.58 16 22 C -0.10 -0.70 8.09 -26.13 -0.21 -0.91 16 23 C -0.14 -1.03 8.08 -25.81 -0.21 -1.24 16 24 C -0.08 -0.80 6.49 -26.04 -0.17 -0.97 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.96 7.18 -51.93 -0.37 0.59 16 27 H 0.04 0.49 7.18 -51.93 -0.37 0.11 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.36 8.21 4.71 -40.82 -0.19 8.02 16 31 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.40 3.55 7.65 -40.82 -0.31 3.24 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.96 8.05 -51.93 -0.42 0.55 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 340.81 15.07 5.14 5.14 Total: -1.00 -33.14 340.81 -8.68 -41.81 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -7.18 Total: 6.86 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -2.15 Total: -7.38 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.15 Total: -55.27 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.08 Total: -8.44 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.28 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.14 -8.68 -41.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482145741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.519 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds