Wall clock time and date at job start Mon Mar 30 2020 19:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47282 * 2 1 4 4 C 1.53000 * 109.47282 * 239.99969 * 2 1 3 5 5 N 1.46503 * 109.47250 * 184.99634 * 4 2 1 6 6 C 1.36930 * 120.00183 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99719 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00297 * 180.02562 * 6 5 4 9 9 N 1.31616 * 120.00149 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99681 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47081 * 89.99908 * 10 8 6 12 12 H 1.48498 * 109.47015 * 210.00064 * 10 8 6 13 13 H 1.48498 * 109.47087 * 329.99808 * 10 8 6 14 14 N 1.46502 * 109.47005 * 120.00173 * 2 1 3 15 15 C 1.34779 * 120.00004 * 274.99985 * 14 2 1 16 16 O 1.21281 * 119.99737 * 0.02562 * 15 14 2 17 17 C 1.50698 * 120.00165 * 179.97438 * 15 14 2 18 18 H 1.09008 * 115.56072 * 34.31551 * 17 15 14 19 19 C 1.52995 * 117.50097 * 248.62507 * 17 15 14 20 20 C 1.52999 * 117.50282 * 179.97438 * 17 15 14 21 21 H 1.09001 * 117.51018 * 0.02562 * 20 17 15 22 22 C 1.52995 * 117.50171 * 214.98298 * 20 17 15 23 23 C 1.53785 * 113.69093 * 80.92360 * 22 20 17 24 24 C 1.53779 * 87.08093 * 139.99088 * 23 22 20 25 25 C 1.53781 * 113.61293 * 178.45985 * 22 20 17 26 26 H 1.08998 * 109.47647 * 299.99616 * 1 2 3 27 27 H 1.08995 * 109.47186 * 60.00088 * 1 2 3 28 28 H 1.09010 * 109.47079 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47324 * 304.99799 * 4 2 1 30 30 H 1.09005 * 109.46629 * 65.00061 * 4 2 1 31 31 H 0.97007 * 119.99739 * 0.02562 * 5 4 2 32 32 H 0.97002 * 119.99734 * 180.02562 * 9 8 6 33 33 H 0.97000 * 120.00024 * 95.00232 * 14 2 1 34 34 H 1.09004 * 117.49936 * 145.02223 * 19 17 15 35 35 H 1.08996 * 117.49739 * 0.02562 * 19 17 15 36 36 H 1.09002 * 112.85043 * 309.65244 * 22 20 17 37 37 H 1.09003 * 113.60734 * 254.54208 * 23 22 20 38 38 H 1.08996 * 113.61146 * 25.43706 * 23 22 20 39 39 H 1.08994 * 113.61314 * 220.01752 * 24 23 22 40 40 H 1.09003 * 113.61186 * 89.11185 * 24 23 22 41 41 H 1.09005 * 113.61302 * 334.47929 * 25 22 20 42 42 H 1.08996 * 113.61527 * 105.30092 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8263 -1.1906 6 6 4.1838 -1.4387 -2.2067 7 1 3.6467 -1.8439 -3.0515 8 6 5.5672 -1.5387 -2.1509 9 7 6.2245 -2.1269 -3.1278 10 14 6.4960 -0.8385 -0.6892 11 1 6.6266 -1.8812 0.3600 12 1 7.8471 -0.4020 -1.1243 13 1 5.7527 0.3246 -0.1415 14 7 2.0183 -0.6907 1.1962 15 6 2.1470 -0.0183 2.3572 16 8 1.8581 1.1583 2.4117 17 6 2.6487 -0.7289 3.5878 18 1 3.3927 -1.5059 3.4117 19 6 1.6563 -0.9472 4.7315 20 6 2.7733 0.0893 4.8746 21 1 2.4920 1.1415 4.8315 22 6 3.9320 -0.2462 5.8157 23 6 5.2720 0.3791 5.3934 24 6 5.5221 0.6579 6.8849 25 6 3.9943 0.6538 7.0611 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0278 -0.0005 29 1 1.6054 -1.7198 -1.2952 30 1 1.7516 -0.1582 -2.1369 31 1 3.9824 -0.4626 -0.4315 32 1 7.1912 -2.1971 -3.0885 33 1 2.2490 -1.6318 1.1526 34 1 1.7472 -1.8678 5.3080 35 1 0.6403 -0.5772 4.5938 36 1 3.9988 -1.3103 6.0422 37 1 5.9703 -0.3367 4.9599 38 1 5.1623 1.2820 4.7928 39 1 5.9811 1.6277 7.0768 40 1 6.0236 -0.1591 7.4037 41 1 3.5355 1.6319 6.9164 42 1 3.6600 0.1603 7.9737 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483174530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:33 Heat of formation + Delta-G solvation = 7.634962 kcal Electronic energy + Delta-G solvation = -20397.657162 eV Core-core repulsion = 17379.003221 eV Total energy + Delta-G solvation = -3018.653941 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.16882 -38.90527 -36.64153 -35.45539 -33.72548 -31.47502 -30.33227 -26.57856 -25.97659 -25.75136 -24.20373 -22.18543 -21.38107 -20.58262 -19.93527 -19.63078 -17.78126 -17.11862 -16.09584 -15.61598 -15.30926 -14.84991 -14.45987 -14.30202 -14.00645 -13.35660 -12.87778 -12.83959 -12.62637 -12.57594 -12.41433 -12.36059 -12.25339 -11.96298 -11.87531 -11.13291 -11.03655 -10.90955 -10.80904 -10.68750 -10.51050 -10.17072 -10.05560 -9.96579 -9.63923 -9.59895 -8.96628 -8.81350 -7.29162 -5.81022 -3.17123 2.64127 3.30166 3.34428 3.40347 3.42943 3.72712 4.40291 4.47681 4.51301 4.55766 4.70911 4.81060 4.88995 5.03181 5.07450 5.20173 5.24951 5.34675 5.47476 5.52606 5.56067 5.56324 5.61447 5.63849 5.74116 5.81962 5.85850 5.87141 5.92131 6.01746 6.05164 6.16723 6.29028 6.36687 6.39144 6.58639 6.83861 7.76739 7.94429 8.37587 8.44801 9.16524 9.88848 10.08471 11.37164 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.005652 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.713173 B = 4952.940742 C = 6443.634098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.129 3.871 3 H 0.086 0.914 4 C 0.149 3.851 5 N -0.755 5.755 6 C -0.247 4.247 7 H 0.091 0.909 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.881 3.119 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.277 1.277 14 N -0.711 5.711 15 C 0.542 3.458 16 O -0.549 6.549 17 C -0.188 4.188 18 H 0.123 0.877 19 C -0.148 4.148 20 C -0.106 4.106 21 H 0.117 0.883 22 C -0.083 4.083 23 C -0.137 4.137 24 C -0.144 4.144 25 C -0.131 4.131 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.363 0.637 32 H 0.260 0.740 33 H 0.405 0.595 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.403 2.486 19.468 21.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.024 3.976 3 H 0.104 0.896 4 C 0.021 3.979 5 N -0.402 5.402 6 C -0.377 4.377 7 H 0.109 0.891 8 C -0.189 4.189 9 N -0.580 5.580 10 Si 0.711 3.289 11 H -0.210 1.210 12 H -0.216 1.216 13 H -0.203 1.203 14 N -0.362 5.362 15 C 0.329 3.671 16 O -0.427 6.427 17 C -0.209 4.209 18 H 0.141 0.859 19 C -0.186 4.186 20 C -0.125 4.125 21 H 0.135 0.865 22 C -0.101 4.101 23 C -0.174 4.174 24 C -0.182 4.182 25 C -0.168 4.168 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.196 0.804 32 H 0.070 0.930 33 H 0.240 0.760 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.562 3.210 19.247 21.308 hybrid contribution 0.987 -0.108 0.731 1.233 sum -7.574 3.102 19.978 21.590 Atomic orbital electron populations 1.22079 0.95191 1.02021 1.02200 1.21312 0.93774 0.97941 0.84549 0.89580 1.20966 0.85488 0.97620 0.93797 1.42713 1.01324 1.71304 1.24818 1.19058 0.89927 1.29335 0.99363 0.89104 1.24653 0.96151 1.00473 0.97590 1.69697 1.07372 1.48426 1.32502 0.86596 0.79843 0.79145 0.83311 1.21000 1.21613 1.20326 1.46003 1.66506 1.14424 1.09264 1.19614 0.77038 0.86633 0.83838 1.90657 1.50997 1.15920 1.85165 1.22277 1.04783 1.04649 0.89205 0.85919 1.23010 0.95342 1.01130 0.99073 1.22358 0.97277 0.97964 0.94900 0.86515 1.22172 0.93493 0.99401 0.95047 1.22928 0.96634 1.01467 0.96392 1.22827 0.96489 1.01846 0.97003 1.22905 0.96328 1.00160 0.97455 0.92476 0.91512 0.92408 0.94879 0.94029 0.80413 0.93005 0.76044 0.87977 0.88403 0.89147 0.91417 0.89758 0.91494 0.90329 0.89958 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.48 37.16 0.35 -1.71 16 2 C 0.13 2.09 2.73 -67.93 -0.19 1.90 16 3 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16 4 C 0.15 2.79 5.82 -4.04 -0.02 2.77 16 5 N -0.76 -17.77 5.24 -59.91 -0.31 -18.08 16 6 C -0.25 -6.94 10.47 -15.06 -0.16 -7.10 16 7 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 8 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 9 N -0.93 -29.19 13.97 55.49 0.78 -28.42 16 10 Si 0.88 22.31 27.74 -169.99 -4.71 17.59 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 13 H -0.28 -6.85 6.52 56.52 0.37 -6.48 16 14 N -0.71 -10.95 4.52 -53.81 -0.24 -11.19 16 15 C 0.54 8.58 7.58 -10.99 -0.08 8.50 16 16 O -0.55 -10.36 15.92 5.56 0.09 -10.27 16 17 C -0.19 -2.35 5.91 -91.78 -0.54 -2.89 16 18 H 0.12 1.44 8.14 -51.92 -0.42 1.02 16 19 C -0.15 -1.49 9.94 -26.71 -0.27 -1.75 16 20 C -0.11 -1.20 4.94 -90.60 -0.45 -1.65 16 21 H 0.12 1.51 7.65 -51.93 -0.40 1.11 16 22 C -0.08 -0.81 3.81 -89.81 -0.34 -1.15 16 23 C -0.14 -1.45 7.65 -25.92 -0.20 -1.65 16 24 C -0.14 -1.25 8.08 -25.92 -0.21 -1.46 16 25 C -0.13 -1.12 7.64 -25.92 -0.20 -1.32 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.36 8.57 5.20 -40.82 -0.21 8.35 16 32 H 0.26 7.75 8.31 -40.82 -0.34 7.42 16 33 H 0.40 5.78 8.60 -40.82 -0.35 5.43 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 0.80 8.12 -51.93 -0.42 0.38 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 345.08 15.07 5.20 5.20 Total: -1.00 -32.51 345.08 -8.89 -41.39 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -7.28 Total: 11.18 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -2.40 Total: -7.41 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.22 Total: -57.69 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.51 -8.89 -41.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483174530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.030 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds