Wall clock time and date at job start Mon Mar 30 2020 19:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47282 * 2 1 4 4 C 1.53000 * 109.47282 * 239.99969 * 2 1 3 5 5 N 1.46503 * 109.47250 * 184.99634 * 4 2 1 6 6 C 1.36930 * 120.00183 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99719 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00297 * 180.02562 * 6 5 4 9 9 N 1.31616 * 120.00149 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99681 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47081 * 89.99908 * 10 8 6 12 12 H 1.48498 * 109.47015 * 210.00064 * 10 8 6 13 13 H 1.48498 * 109.47087 * 329.99808 * 10 8 6 14 14 N 1.46502 * 109.47005 * 120.00173 * 2 1 3 15 15 C 1.34779 * 120.00004 * 274.99985 * 14 2 1 16 16 O 1.21281 * 119.99737 * 0.02562 * 15 14 2 17 17 C 1.50698 * 120.00165 * 179.97438 * 15 14 2 18 18 H 1.09008 * 115.56072 * 34.31551 * 17 15 14 19 19 C 1.52995 * 117.50097 * 248.62507 * 17 15 14 20 20 C 1.52999 * 117.50282 * 179.97438 * 17 15 14 21 21 H 1.09001 * 117.51018 * 0.02562 * 20 17 15 22 22 C 1.52995 * 117.50171 * 214.98298 * 20 17 15 23 23 C 1.53785 * 113.69093 * 80.92360 * 22 20 17 24 24 C 1.53779 * 87.08093 * 139.99088 * 23 22 20 25 25 C 1.53781 * 113.61293 * 178.45985 * 22 20 17 26 26 H 1.08998 * 109.47647 * 299.99616 * 1 2 3 27 27 H 1.08995 * 109.47186 * 60.00088 * 1 2 3 28 28 H 1.09010 * 109.47079 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47324 * 304.99799 * 4 2 1 30 30 H 1.09005 * 109.46629 * 65.00061 * 4 2 1 31 31 H 0.97007 * 119.99739 * 0.02562 * 5 4 2 32 32 H 0.97002 * 119.99734 * 180.02562 * 9 8 6 33 33 H 0.97000 * 120.00024 * 95.00232 * 14 2 1 34 34 H 1.09004 * 117.49936 * 145.02223 * 19 17 15 35 35 H 1.08996 * 117.49739 * 0.02562 * 19 17 15 36 36 H 1.09002 * 112.85043 * 309.65244 * 22 20 17 37 37 H 1.09003 * 113.60734 * 254.54208 * 23 22 20 38 38 H 1.08996 * 113.61146 * 25.43706 * 23 22 20 39 39 H 1.08994 * 113.61314 * 220.01752 * 24 23 22 40 40 H 1.09003 * 113.61186 * 89.11185 * 24 23 22 41 41 H 1.09005 * 113.61302 * 334.47929 * 25 22 20 42 42 H 1.08996 * 113.61527 * 105.30092 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8263 -1.1906 6 6 4.1838 -1.4387 -2.2067 7 1 3.6467 -1.8439 -3.0515 8 6 5.5672 -1.5387 -2.1509 9 7 6.2245 -2.1269 -3.1278 10 14 6.4960 -0.8385 -0.6892 11 1 6.6266 -1.8812 0.3600 12 1 7.8471 -0.4020 -1.1243 13 1 5.7527 0.3246 -0.1415 14 7 2.0183 -0.6907 1.1962 15 6 2.1470 -0.0183 2.3572 16 8 1.8581 1.1583 2.4117 17 6 2.6487 -0.7289 3.5878 18 1 3.3927 -1.5059 3.4117 19 6 1.6563 -0.9472 4.7315 20 6 2.7733 0.0893 4.8746 21 1 2.4920 1.1415 4.8315 22 6 3.9320 -0.2462 5.8157 23 6 5.2720 0.3791 5.3934 24 6 5.5221 0.6579 6.8849 25 6 3.9943 0.6538 7.0611 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0278 -0.0005 29 1 1.6054 -1.7198 -1.2952 30 1 1.7516 -0.1582 -2.1369 31 1 3.9824 -0.4626 -0.4315 32 1 7.1912 -2.1971 -3.0885 33 1 2.2490 -1.6318 1.1526 34 1 1.7472 -1.8678 5.3080 35 1 0.6403 -0.5772 4.5938 36 1 3.9988 -1.3103 6.0422 37 1 5.9703 -0.3367 4.9599 38 1 5.1623 1.2820 4.7928 39 1 5.9811 1.6277 7.0768 40 1 6.0236 -0.1591 7.4037 41 1 3.5355 1.6319 6.9164 42 1 3.6600 0.1603 7.9737 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483174530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:32 Heat of formation + Delta-G solvation = -12.852092 kcal Electronic energy + Delta-G solvation = -20398.545547 eV Core-core repulsion = 17379.003221 eV Total energy + Delta-G solvation = -3019.542326 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.26653 -39.83186 -37.98480 -36.53939 -35.51700 -33.34341 -31.83763 -27.68235 -27.35697 -26.48348 -25.26500 -24.04432 -22.38132 -21.81521 -21.10845 -20.38621 -19.75769 -18.30800 -17.34097 -16.71961 -16.46196 -16.31016 -15.88310 -15.61995 -15.34124 -14.85217 -14.30011 -14.23552 -13.93591 -13.73374 -13.55406 -13.33029 -13.27580 -13.19838 -12.90161 -12.76131 -12.61305 -12.24739 -11.95625 -11.90125 -11.78752 -11.55137 -11.42633 -11.08047 -10.94217 -10.86233 -10.65079 -10.10673 -9.35333 -8.06628 -5.39950 1.32265 1.35402 1.41710 1.48431 2.15380 2.42786 2.80353 3.25225 3.48456 3.60257 3.67048 3.71292 3.86928 3.94704 3.96892 4.11260 4.21896 4.24771 4.28910 4.39252 4.43788 4.76420 4.79824 4.81598 4.86368 4.87175 4.88085 4.90221 5.02305 5.08176 5.08841 5.11499 5.23637 5.26907 5.38845 5.53614 5.64149 5.72689 6.17222 6.55552 7.02902 7.23200 7.78481 7.96718 9.14721 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.005652 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.713173 B = 4952.940742 C = 6443.634098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.136 3.864 3 H 0.063 0.937 4 C 0.148 3.852 5 N -0.758 5.758 6 C -0.234 4.234 7 H 0.064 0.936 8 C -0.056 4.056 9 N -0.979 5.979 10 Si 0.947 3.053 11 H -0.269 1.269 12 H -0.296 1.296 13 H -0.270 1.270 14 N -0.709 5.709 15 C 0.538 3.462 16 O -0.586 6.586 17 C -0.203 4.203 18 H 0.134 0.866 19 C -0.123 4.123 20 C -0.109 4.109 21 H 0.095 0.905 22 C -0.078 4.078 23 C -0.150 4.150 24 C -0.138 4.138 25 C -0.127 4.127 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.363 0.637 32 H 0.259 0.741 33 H 0.411 0.589 34 H 0.131 0.869 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.189 1.890 21.981 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.031 3.969 3 H 0.081 0.919 4 C 0.022 3.978 5 N -0.404 5.404 6 C -0.365 4.365 7 H 0.082 0.918 8 C -0.248 4.248 9 N -0.630 5.630 10 Si 0.775 3.225 11 H -0.194 1.194 12 H -0.222 1.222 13 H -0.196 1.196 14 N -0.360 5.360 15 C 0.326 3.674 16 O -0.467 6.467 17 C -0.224 4.224 18 H 0.151 0.849 19 C -0.160 4.160 20 C -0.128 4.128 21 H 0.113 0.887 22 C -0.096 4.096 23 C -0.187 4.187 24 C -0.175 4.175 25 C -0.164 4.164 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.196 0.804 32 H 0.068 0.932 33 H 0.247 0.753 34 H 0.149 0.851 35 H 0.114 0.886 36 H 0.125 0.875 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.394 2.607 21.779 23.862 hybrid contribution 1.141 0.096 -0.134 1.153 sum -8.253 2.702 21.646 23.323 Atomic orbital electron populations 1.21987 0.92524 1.03246 1.02657 1.21149 0.95692 0.96233 0.83804 0.91903 1.21129 0.82785 0.98636 0.95261 1.42722 1.03243 1.70780 1.23652 1.19063 0.90109 1.28017 0.99275 0.91780 1.25379 0.97222 1.01683 1.00482 1.69858 1.07537 1.50687 1.34885 0.85531 0.77923 0.78829 0.80184 1.19409 1.22235 1.19575 1.46009 1.66332 1.14673 1.08994 1.20191 0.76254 0.86297 0.84663 1.90638 1.52713 1.17580 1.85787 1.22285 1.06484 1.05325 0.88299 0.84850 1.23127 0.94491 1.01546 0.96832 1.22346 0.98744 0.97165 0.94543 0.88730 1.22219 0.92005 1.00448 0.94972 1.22966 0.97532 1.00714 0.97508 1.22829 0.96833 1.02439 0.95434 1.22878 0.96130 0.99790 0.97588 0.92890 0.90195 0.90759 0.93484 0.93895 0.80351 0.93248 0.75265 0.85072 0.88641 0.87481 0.91855 0.91773 0.91385 0.88981 0.90595 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.48 71.98 0.68 -2.88 16 2 C 0.14 4.25 2.73 44.99 0.12 4.37 16 3 H 0.06 2.28 7.58 -2.39 -0.02 2.26 16 4 C 0.15 5.37 5.82 86.38 0.50 5.87 16 5 N -0.76 -35.03 5.24 -343.44 -1.80 -36.83 16 6 C -0.23 -13.17 10.47 84.04 0.88 -12.29 16 7 H 0.06 3.90 8.06 -2.91 -0.02 3.88 16 8 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 9 N -0.98 -62.29 13.97 21.65 0.30 -61.99 16 10 Si 0.95 46.16 27.74 68.60 1.90 48.07 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 13 H -0.27 -12.68 6.52 99.48 0.65 -12.03 16 14 N -0.71 -20.86 4.52 -442.54 -2.00 -22.85 16 15 C 0.54 16.51 7.58 87.66 0.66 17.18 16 16 O -0.59 -22.12 15.92 -3.03 -0.05 -22.16 16 17 C -0.20 -4.71 5.91 -11.54 -0.07 -4.77 16 18 H 0.13 2.80 8.14 -2.38 -0.02 2.78 16 19 C -0.12 -2.12 9.94 30.61 0.30 -1.82 16 20 C -0.11 -2.30 4.94 -10.78 -0.05 -2.36 16 21 H 0.09 2.44 7.65 -2.39 -0.02 2.42 16 22 C -0.08 -1.35 3.81 -10.27 -0.04 -1.39 16 23 C -0.15 -3.00 7.65 31.12 0.24 -2.76 16 24 C -0.14 -2.13 8.08 31.12 0.25 -1.87 16 25 C -0.13 -1.88 7.64 31.12 0.24 -1.64 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.36 16.71 5.20 -92.70 -0.48 16.23 16 32 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 33 H 0.41 10.98 8.60 -92.71 -0.80 10.18 16 34 H 0.13 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.11 1.52 8.12 -2.39 -0.02 1.50 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.22 8.09 -2.38 -0.02 1.21 16 42 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -70.46 345.08 2.21 -68.25 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: -0.34 Total: 34.69 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 4.19 Total: -7.16 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -3.50 Total: -121.68 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.05 Total: -22.16 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.90 Total: 48.07 kcal Total: -70.46 2.21 -68.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483174530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.394 kcal (2) G-P(sol) polarization free energy of solvation -70.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds