Wall clock time and date at job start Mon Mar 30 2020 19:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47284 * 2 1 4 4 N 1.46500 * 109.46880 * 239.99934 * 2 1 3 5 5 C 1.34769 * 120.00200 * 85.00184 * 4 2 1 6 6 O 1.21283 * 119.99929 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00479 * 180.02562 * 5 4 2 8 8 C 1.53005 * 112.85069 * 50.33026 * 7 5 4 9 9 C 1.53789 * 113.61377 * 279.13689 * 7 5 4 10 10 C 1.53960 * 87.01698 * 220.04542 * 9 7 5 11 11 C 1.53778 * 113.61921 * 181.52718 * 7 5 4 12 12 C 1.53008 * 109.46911 * 120.00316 * 2 1 3 13 13 C 1.53497 * 114.20384 * 299.99367 * 12 2 1 14 14 N 1.47070 * 87.98301 * 87.52522 * 13 12 2 15 15 C 1.36932 * 136.05620 * 207.08686 * 14 13 12 16 16 H 1.08001 * 120.00168 * 7.92391 * 15 14 13 17 17 C 1.38807 * 120.00154 * 187.92753 * 15 14 13 18 18 N 1.31620 * 120.00181 * 195.15567 * 17 15 14 19 19 Si 1.86800 * 119.99868 * 15.15620 * 17 15 14 20 20 H 1.48503 * 109.47270 * 270.00075 * 19 17 15 21 21 H 1.48502 * 109.47339 * 30.00381 * 19 17 15 22 22 H 1.48506 * 109.47014 * 149.99865 * 19 17 15 23 23 C 1.47068 * 87.88415 * 27.33811 * 14 13 12 24 24 H 1.09006 * 109.46761 * 299.99985 * 1 2 3 25 25 H 1.08995 * 109.46842 * 59.99566 * 1 2 3 26 26 H 1.09002 * 109.47110 * 180.02562 * 1 2 3 27 27 H 0.97004 * 119.99931 * 265.00113 * 4 2 1 28 28 H 1.09004 * 109.46641 * 69.67017 * 8 7 5 29 29 H 1.08995 * 109.47528 * 189.66786 * 8 7 5 30 30 H 1.09003 * 109.47112 * 309.67064 * 8 7 5 31 31 H 1.08998 * 113.61487 * 334.56611 * 9 7 5 32 32 H 1.09001 * 113.60957 * 105.46603 * 9 7 5 33 33 H 1.09004 * 113.53267 * 270.80904 * 10 9 7 34 34 H 1.09003 * 113.73812 * 139.94867 * 10 9 7 35 35 H 1.08997 * 113.62131 * 254.53058 * 11 7 5 36 36 H 1.09002 * 113.61438 * 25.43466 * 11 7 5 37 37 H 1.09005 * 113.27482 * 166.93336 * 12 2 1 38 38 H 1.08996 * 113.46841 * 332.74047 * 13 12 2 39 39 H 1.08998 * 113.51535 * 202.31022 * 13 12 2 40 40 H 0.97002 * 120.00096 * 354.91189 * 18 17 15 41 41 H 1.09005 * 113.46482 * 87.44223 * 23 14 13 42 42 H 1.09000 * 113.46807 * 217.87726 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0184 -2.3571 6 8 1.8582 1.1583 -2.4117 7 6 2.6487 -0.7289 -3.5877 8 6 1.9008 -2.0342 -3.8666 9 6 4.1791 -0.8737 -3.6346 10 6 4.0825 -0.5570 -5.1381 11 6 2.7737 0.1845 -4.8186 12 6 2.0400 -0.7214 1.2493 13 6 1.5899 -0.0846 2.5714 14 7 0.3745 -0.9091 2.4946 15 6 -0.9129 -0.8126 2.9512 16 1 -1.2551 0.1019 3.4126 17 6 -1.7781 -1.8901 2.8209 18 7 -3.0736 -1.7165 2.9761 19 14 -1.1040 -3.5868 2.4255 20 1 -1.0532 -3.7683 0.9525 21 1 0.2639 -3.7194 2.9881 22 1 -1.9868 -4.6215 3.0217 23 6 1.1519 -1.8859 1.7172 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 2.2490 -1.6318 -1.1526 28 1 0.8820 -1.8088 -4.1819 29 1 2.4122 -2.5844 -4.6564 30 1 1.8753 -2.6391 -2.9602 31 1 4.7075 -0.1122 -3.0610 32 1 4.5287 -1.8839 -3.4218 33 1 3.9429 -1.4406 -5.7610 34 1 4.8767 0.0955 -5.5010 35 1 1.9906 0.0274 -5.5603 36 1 2.9173 1.2359 -4.5693 37 1 3.1032 -0.9579 1.2062 38 1 1.3946 0.9849 2.4938 39 1 2.2319 -0.3356 3.4158 40 1 -3.4174 -0.8529 3.2536 41 1 1.6789 -2.6124 2.3358 42 1 0.5834 -2.3510 0.9118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485520113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:42 Heat of formation + Delta-G solvation = 41.661330 kcal Electronic energy + Delta-G solvation = -21322.378883 eV Core-core repulsion = 18305.200437 eV Total energy + Delta-G solvation = -3017.178447 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.64892 -39.30038 -37.52359 -34.53966 -32.38878 -30.58800 -29.01926 -27.93987 -25.83949 -25.35549 -25.04119 -23.75350 -21.49908 -20.43371 -19.24178 -18.32847 -17.45093 -17.03534 -15.95141 -15.43846 -15.22414 -15.15731 -14.54753 -14.00586 -13.70634 -13.67014 -13.26958 -12.86984 -12.66076 -12.49815 -12.27660 -11.82982 -11.69994 -11.47864 -11.27823 -11.22967 -11.16843 -10.74127 -10.67521 -10.53251 -10.43687 -10.27880 -10.06587 -9.51513 -9.32229 -9.15011 -8.74243 -8.62569 -7.11639 -6.28385 -3.20274 2.80185 3.37563 3.38164 3.45907 3.60508 4.29190 4.36357 4.56813 4.58836 4.60563 4.79554 4.93105 5.04745 5.20594 5.27258 5.37155 5.45291 5.47873 5.61613 5.63302 5.67216 5.71586 5.84848 5.86021 5.92861 6.05884 6.06950 6.22468 6.24937 6.27558 6.33540 6.39733 6.53927 6.63263 6.82695 7.00038 7.14701 7.33805 7.76394 8.25816 8.45235 8.99167 9.52643 10.39808 11.21291 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028437 B = 0.005143 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.403358 B = 5442.829302 C = 5674.326927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.171 3.829 3 H 0.081 0.919 4 N -0.719 5.719 5 C 0.527 3.473 6 O -0.544 6.544 7 C -0.112 4.112 8 C -0.128 4.128 9 C -0.121 4.121 10 C -0.141 4.141 11 C -0.114 4.114 12 C -0.145 4.145 13 C 0.126 3.874 14 N -0.618 5.618 15 C -0.300 4.300 16 H 0.081 0.919 17 C -0.022 4.022 18 N -0.933 5.933 19 Si 1.060 2.940 20 H -0.295 1.295 21 H -0.283 1.283 22 H -0.297 1.297 23 C 0.104 3.896 24 H 0.090 0.910 25 H 0.034 0.966 26 H 0.058 0.942 27 H 0.396 0.604 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.038 0.962 40 H 0.261 0.739 41 H 0.044 0.956 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.789 -1.079 -13.794 20.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.067 3.933 3 H 0.099 0.901 4 N -0.369 5.369 5 C 0.313 3.687 6 O -0.421 6.421 7 C -0.115 4.115 8 C -0.185 4.185 9 C -0.159 4.159 10 C -0.178 4.178 11 C -0.152 4.152 12 C -0.165 4.165 13 C 0.000 4.000 14 N -0.347 5.347 15 C -0.426 4.426 16 H 0.099 0.901 17 C -0.221 4.221 18 N -0.575 5.575 19 Si 0.892 3.108 20 H -0.223 1.223 21 H -0.209 1.209 22 H -0.224 1.224 23 C -0.022 4.022 24 H 0.109 0.891 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.230 0.770 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.857 -1.751 -14.031 20.510 hybrid contribution 0.528 0.948 0.665 1.273 sum 15.385 -0.803 -13.366 20.396 Atomic orbital electron populations 1.22145 0.93161 1.03064 1.01917 1.20608 0.95487 0.95620 0.81563 0.90095 1.46190 1.66747 1.13938 1.10055 1.20305 0.77122 0.87096 0.84211 1.90668 1.50217 1.16246 1.85010 1.22164 0.97154 0.97657 0.94505 1.21596 1.00327 0.94263 1.02307 1.22940 0.93233 1.02428 0.97275 1.22856 0.98247 1.00615 0.96079 1.22857 0.97484 0.99511 0.95317 1.23237 0.98224 0.99641 0.95352 1.22325 0.88565 0.96340 0.92814 1.46284 1.05048 1.20685 1.62647 1.20073 0.83145 1.00417 1.38969 0.90121 1.25679 0.94199 1.02215 1.00037 1.70891 1.10930 1.27313 1.48384 0.83813 0.74653 0.76397 0.75958 1.22259 1.20895 1.22446 1.22758 0.92041 0.92964 0.94407 0.89085 0.94739 0.92264 0.76982 0.91614 0.91422 0.91786 0.89772 0.90670 0.90002 0.91183 0.91105 0.88819 0.90558 0.93491 0.94449 0.92844 0.93900 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.06 37.16 0.30 -2.64 16 2 C 0.17 2.89 2.76 -67.92 -0.19 2.70 16 3 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 4 N -0.72 -10.28 4.97 -53.80 -0.27 -10.55 16 5 C 0.53 7.82 6.88 -10.99 -0.08 7.74 16 6 O -0.54 -10.20 15.57 5.56 0.09 -10.11 16 7 C -0.11 -1.22 1.25 -154.84 -0.19 -1.41 16 8 C -0.13 -1.19 8.98 37.16 0.33 -0.86 16 9 C -0.12 -1.07 7.21 -25.82 -0.19 -1.25 16 10 C -0.14 -1.12 7.74 -25.83 -0.20 -1.32 16 11 C -0.11 -1.19 6.99 -25.92 -0.18 -1.37 16 12 C -0.14 -2.38 4.25 -89.97 -0.38 -2.76 16 13 C 0.13 2.40 7.86 -8.50 -0.07 2.33 16 14 N -0.62 -14.39 2.02 -184.60 -0.37 -14.76 16 15 C -0.30 -8.31 9.87 -15.06 -0.15 -8.46 16 16 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 17 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 18 N -0.93 -29.11 13.70 55.49 0.76 -28.35 16 19 Si 1.06 26.13 25.51 -169.99 -4.34 21.79 16 20 H -0.29 -6.94 6.97 56.52 0.39 -6.55 16 21 H -0.28 -6.44 5.66 56.52 0.32 -6.12 16 22 H -0.30 -7.51 7.11 56.52 0.40 -7.10 16 23 C 0.10 2.06 4.60 -8.37 -0.04 2.02 16 24 H 0.09 2.09 5.93 -51.93 -0.31 1.78 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.30 6.31 -51.93 -0.33 0.97 16 27 H 0.40 4.75 7.59 -40.82 -0.31 4.44 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.50 7.34 -51.93 -0.38 0.12 16 30 H 0.06 0.57 7.11 -51.93 -0.37 0.20 16 31 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 32 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 33 H 0.08 0.55 7.64 -51.93 -0.40 0.15 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.09 1.13 7.45 -51.93 -0.39 0.75 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.88 8.12 -51.93 -0.42 0.46 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.26 8.09 8.73 -40.82 -0.36 7.73 16 41 H 0.04 0.84 7.02 -51.93 -0.36 0.48 16 42 H 0.05 1.09 4.82 -51.93 -0.25 0.83 16 LS Contribution 322.14 15.07 4.85 4.85 Total: -1.00 -32.35 322.14 -7.35 -39.70 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.95 Total: 3.43 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -1.12 Total: -6.00 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.12 Total: -53.66 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 26.13 SS G_CDS: -4.34 Total: 21.79 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.35 -7.35 -39.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485520113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.358 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds