Wall clock time and date at job start Mon Mar 30 2020 19:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47611 * 2 1 4 4 C 1.53003 * 109.46914 * 120.00004 * 2 1 3 5 5 C 1.53001 * 109.47182 * 184.99457 * 4 2 1 6 6 N 1.46493 * 109.47084 * 179.97438 * 5 4 2 7 7 C 1.34784 * 119.99864 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99649 * 359.72839 * 7 6 5 9 9 C 1.50694 * 119.99988 * 179.72721 * 7 6 5 10 10 H 1.09000 * 115.56136 * 325.65949 * 9 7 6 11 11 C 1.53128 * 117.51391 * 111.39143 * 9 7 6 12 12 C 1.52458 * 117.51406 * 179.85439 * 9 7 6 13 13 C 1.53262 * 128.58795 * 134.94876 * 12 9 7 14 14 C 1.53895 * 86.88305 * 194.88923 * 13 12 9 15 15 C 1.53261 * 128.58588 * 10.15119 * 12 9 7 16 16 N 1.46501 * 109.46751 * 239.99766 * 2 1 3 17 17 C 1.36934 * 120.00126 * 85.00636 * 16 2 1 18 18 H 1.08002 * 119.99578 * 359.97438 * 17 16 2 19 19 C 1.38812 * 120.00186 * 180.02562 * 17 16 2 20 20 N 1.31621 * 119.99820 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00010 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47440 * 59.99627 * 21 19 17 23 23 H 1.48498 * 109.47374 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47205 * 299.99736 * 21 19 17 25 25 H 1.09003 * 109.46874 * 59.99941 * 1 2 3 26 26 H 1.09000 * 109.47600 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46784 * 300.00215 * 1 2 3 28 28 H 1.09007 * 109.47291 * 64.99965 * 4 2 1 29 29 H 1.08993 * 109.47243 * 304.99874 * 4 2 1 30 30 H 1.09007 * 109.46593 * 60.00081 * 5 4 2 31 31 H 1.09006 * 109.47216 * 300.00539 * 5 4 2 32 32 H 0.97000 * 120.00740 * 359.72857 * 6 5 4 33 33 H 1.08997 * 117.51456 * 214.89231 * 11 9 7 34 34 H 1.09002 * 117.51036 * 0.02562 * 11 9 7 35 35 H 1.08995 * 113.64576 * 309.38911 * 13 12 9 36 36 H 1.08995 * 113.64286 * 80.39278 * 13 12 9 37 37 H 1.08997 * 113.58628 * 270.39331 * 14 13 12 38 38 H 1.09002 * 113.58487 * 139.57088 * 14 13 12 39 39 H 1.09001 * 113.64485 * 279.61584 * 15 12 9 40 40 H 1.09005 * 113.64566 * 50.60767 * 15 12 9 41 41 H 0.97001 * 119.99997 * 264.99837 * 16 2 1 42 42 H 0.97006 * 119.99578 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6135 1.3137 6 7 4.0530 -1.3035 2.5102 7 6 5.3739 -1.3389 2.7759 8 8 6.1587 -0.8036 2.0219 9 6 5.8756 -2.0435 4.0099 10 1 5.2242 -1.9860 4.8819 11 6 6.6797 -3.3314 3.8115 12 6 7.3806 -2.0516 4.2535 13 6 8.1396 -1.7787 5.5567 14 6 9.4035 -1.6308 4.6912 15 6 8.4711 -1.2586 3.5249 16 7 2.0183 -0.6907 -1.1962 17 6 2.1491 -0.0076 -2.3757 18 1 1.8920 1.0402 -2.4243 19 6 2.6113 -0.6621 -3.5093 20 7 2.9241 -1.9393 -3.4501 21 14 2.7891 0.2695 -5.1185 22 1 3.7445 1.3919 -4.9378 23 1 3.2980 -0.6488 -6.1686 24 1 1.4666 0.8064 -5.5285 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.7516 -1.7716 1.2056 29 1 1.6054 -0.2618 2.1369 30 1 3.8532 0.4369 1.3574 31 1 3.9994 -1.0730 0.4259 32 1 3.4254 -1.7313 3.1135 33 1 6.5577 -4.1206 4.5534 34 1 6.8460 -3.6686 2.7883 35 1 7.8389 -0.8558 6.0526 36 1 8.1699 -2.6335 6.2322 37 1 9.9399 -2.5673 4.5390 38 1 10.0548 -0.8155 5.0062 39 1 8.7672 -1.6965 2.5716 40 1 8.2627 -0.1910 3.4553 41 1 2.2490 -1.6318 -1.1526 42 1 3.2474 -2.3965 -4.2422 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492090318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:19 Heat of formation + Delta-G solvation = 9.190031 kcal Electronic energy + Delta-G solvation = -19974.387863 eV Core-core repulsion = 16955.801355 eV Total energy + Delta-G solvation = -3018.586508 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.29462 -38.42177 -36.49542 -34.25416 -33.73279 -32.19334 -29.31927 -28.11687 -25.77703 -24.66843 -23.58520 -23.18015 -22.02251 -20.37679 -19.55480 -18.44222 -17.27264 -16.90260 -15.92453 -15.34973 -15.25613 -15.06051 -14.51645 -14.17554 -13.90031 -13.45010 -12.98728 -12.75298 -12.48170 -12.40199 -12.10615 -12.01190 -11.66395 -11.56821 -11.51643 -11.03571 -10.88354 -10.70977 -10.61098 -10.44881 -10.27147 -10.18388 -9.98023 -9.87387 -9.61199 -9.43790 -8.88390 -8.72295 -6.92295 -5.72064 -3.00717 2.67886 3.30431 3.47871 3.52363 3.53090 3.69976 4.30016 4.49460 4.63596 4.66499 4.66816 4.78845 5.08203 5.23688 5.33243 5.42724 5.44485 5.52952 5.57756 5.59506 5.68945 5.72259 5.74149 5.85936 5.91077 6.09130 6.10112 6.20322 6.20878 6.31127 6.38224 6.42613 6.52944 6.72599 6.77249 6.89053 7.08503 7.74047 7.75095 8.46333 8.48725 9.57575 10.14412 10.49063 11.50564 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022329 B = 0.003755 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.678649 B = 7454.679508 C = 8263.868086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.123 3.877 6 N -0.727 5.727 7 C 0.536 3.464 8 O -0.532 6.532 9 C -0.179 4.179 10 H 0.120 0.880 11 C -0.123 4.123 12 C -0.127 4.127 13 C -0.099 4.099 14 C -0.142 4.142 15 C -0.083 4.083 16 N -0.723 5.723 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.287 1.287 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.035 0.965 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.396 0.604 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.383 0.617 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.700 -1.660 20.265 21.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.171 4.171 5 C 0.000 4.000 6 N -0.377 5.377 7 C 0.322 3.678 8 O -0.409 6.409 9 C -0.200 4.200 10 H 0.138 0.862 11 C -0.160 4.160 12 C -0.128 4.128 13 C -0.136 4.136 14 C -0.180 4.180 15 C -0.120 4.120 16 N -0.365 5.365 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.214 1.214 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.229 0.771 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.217 0.783 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.286 -1.137 19.539 20.557 hybrid contribution -0.459 -0.096 -0.656 0.806 sum 5.827 -1.233 18.883 19.800 Atomic orbital electron populations 1.22427 0.99171 1.00814 0.99938 1.20151 0.91847 0.95563 0.86057 0.93341 1.22055 0.93987 1.01751 0.99266 1.21437 0.94327 0.97067 0.87183 1.46069 1.07120 1.57186 1.27367 1.19593 0.82369 0.80028 0.85802 1.90719 1.55304 1.45524 1.49333 1.22171 0.95883 1.03297 0.98634 0.86234 1.22799 1.00272 0.89738 1.03194 1.22273 0.90551 1.00699 0.99264 1.22502 0.95160 1.01633 0.94276 1.22818 0.96006 1.01698 0.97466 1.22326 0.92460 1.00130 0.97105 1.42444 1.78109 1.10644 1.05348 1.19181 1.36616 0.93821 0.87360 0.91279 1.24720 1.02151 0.95952 0.98029 1.69649 1.50887 1.08663 1.28944 0.86292 0.77715 0.78668 0.83661 1.21254 1.21747 1.21364 0.92730 0.93534 0.94595 0.91637 0.91998 0.91996 0.89811 0.77128 0.87759 0.87901 0.89712 0.91384 0.90205 0.91341 0.91151 0.89414 0.78296 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.49 37.16 0.35 -2.53 16 2 C 0.17 3.39 2.89 -67.93 -0.20 3.19 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 C -0.13 -2.05 4.87 -26.73 -0.13 -2.18 16 5 C 0.12 2.10 5.56 -4.04 -0.02 2.07 16 6 N -0.73 -10.15 5.56 -60.29 -0.33 -10.49 16 7 C 0.54 8.22 7.61 -10.98 -0.08 8.14 16 8 O -0.53 -10.45 15.14 5.56 0.08 -10.37 16 9 C -0.18 -2.01 6.19 -91.99 -0.57 -2.58 16 10 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 11 C -0.12 -1.26 10.24 -26.94 -0.28 -1.53 16 12 C -0.13 -1.39 2.88 -154.79 -0.45 -1.84 16 13 C -0.10 -0.84 8.10 -26.13 -0.21 -1.05 16 14 C -0.14 -1.27 8.08 -25.81 -0.21 -1.48 16 15 C -0.08 -1.00 6.47 -26.14 -0.17 -1.17 16 16 N -0.72 -17.97 4.57 -53.42 -0.24 -18.22 16 17 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.55 13.06 55.49 0.72 -27.82 16 21 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.08 1.79 7.75 -51.93 -0.40 1.39 16 32 H 0.40 4.18 8.47 -40.82 -0.35 3.83 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.09 1.16 8.05 -51.93 -0.42 0.74 16 41 H 0.38 10.15 7.80 -40.82 -0.32 9.84 16 42 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 347.28 15.07 5.23 5.23 Total: -1.00 -32.55 347.28 -9.13 -41.69 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -7.37 Total: 10.41 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -2.20 Total: -8.25 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.15 Total: -56.52 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.55 -9.13 -41.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492090318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.879 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds