Wall clock time and date at job start Mon Mar 30 2020 19:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47422 * 2 1 4 4 C 1.53000 * 109.47010 * 239.99711 * 2 1 3 5 5 C 1.52994 * 109.47020 * 175.00416 * 4 2 1 6 6 N 1.46504 * 109.47253 * 180.02562 * 5 4 2 7 7 C 1.36933 * 120.00127 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99843 * 359.97438 * 7 6 5 9 9 C 1.38811 * 119.99821 * 179.97438 * 7 6 5 10 10 N 1.31616 * 120.00292 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99821 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47382 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46970 * 120.00265 * 11 9 7 14 14 H 1.48505 * 109.47272 * 240.00181 * 11 9 7 15 15 N 1.46506 * 109.46725 * 120.00071 * 2 1 3 16 16 C 1.34773 * 119.99634 * 274.99593 * 15 2 1 17 17 O 1.21281 * 120.00694 * 0.02562 * 16 15 2 18 18 C 1.50706 * 119.99695 * 180.02562 * 16 15 2 19 19 H 1.08996 * 115.55992 * 34.34178 * 18 16 15 20 20 C 1.53122 * 117.50815 * 248.60851 * 18 16 15 21 21 C 1.52463 * 117.51125 * 180.14587 * 18 16 15 22 22 C 1.53250 * 128.58738 * 349.84901 * 21 18 16 23 23 C 1.53888 * 86.88646 * 194.88615 * 22 21 18 24 24 C 1.53259 * 128.58460 * 225.04458 * 21 18 16 25 25 H 1.09003 * 109.47352 * 300.00172 * 1 2 3 26 26 H 1.09002 * 109.47144 * 60.00073 * 1 2 3 27 27 H 1.08994 * 109.47422 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47101 * 295.00610 * 4 2 1 29 29 H 1.08999 * 109.46770 * 54.99937 * 4 2 1 30 30 H 1.09006 * 109.47127 * 299.99591 * 5 4 2 31 31 H 1.08999 * 109.47740 * 60.00114 * 5 4 2 32 32 H 0.96995 * 119.99761 * 359.97438 * 6 5 4 33 33 H 0.96995 * 120.00105 * 179.97438 * 10 9 7 34 34 H 0.96992 * 119.99868 * 95.00145 * 15 2 1 35 35 H 1.08995 * 117.51814 * 359.97438 * 20 18 16 36 36 H 1.08998 * 117.51114 * 145.10624 * 20 18 16 37 37 H 1.09006 * 113.64447 * 309.38353 * 22 21 18 38 38 H 1.08997 * 113.65400 * 80.38504 * 22 21 18 39 39 H 1.08995 * 113.58941 * 270.39647 * 23 22 21 40 40 H 1.09002 * 113.59005 * 139.56409 * 23 22 21 41 41 H 1.09003 * 113.64062 * 279.61074 * 24 21 18 42 42 H 1.08996 * 113.64555 * 50.52536 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6135 -1.3136 6 7 4.0531 -1.3036 -2.5101 7 6 5.3950 -1.3395 -2.7801 8 1 6.0935 -0.8587 -2.1111 9 6 5.8577 -1.9939 -3.9135 10 7 5.0065 -2.5794 -4.7289 11 14 7.6883 -2.0422 -4.2821 12 1 8.4268 -1.3144 -3.2191 13 1 8.1474 -3.4539 -4.3254 14 1 7.9462 -1.3974 -5.5948 15 7 2.0183 -0.6907 1.1962 16 6 2.1470 -0.0183 2.3571 17 8 1.8582 1.1584 2.4118 18 6 2.6498 -0.7286 3.5875 19 1 3.3944 -1.5047 3.4112 20 6 1.6574 -0.9475 4.7329 21 6 2.7702 0.0856 4.8709 22 6 2.6488 1.6020 5.0558 23 6 3.2875 1.3998 6.4413 24 6 3.9252 0.1176 5.8778 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7515 -1.7716 -1.2055 29 1 1.6053 -0.2618 -2.1369 30 1 3.8532 0.4368 -1.3574 31 1 3.9994 -1.0730 -0.4259 32 1 3.4258 -1.7351 -3.1110 33 1 5.3298 -3.0363 -5.5210 34 1 2.2489 -1.6317 1.1527 35 1 0.6413 -0.5775 4.5965 36 1 1.7499 -1.8674 5.3103 37 1 3.2690 2.1773 4.3683 38 1 1.6190 1.9566 5.0967 39 1 2.5619 1.2142 7.2331 40 1 4.0137 2.1692 6.7034 41 1 3.9184 -0.7181 6.5776 42 1 4.9008 0.2780 5.4189 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497281613.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:29 Heat of formation + Delta-G solvation = 8.228605 kcal Electronic energy + Delta-G solvation = -20036.977679 eV Core-core repulsion = 17018.349480 eV Total energy + Delta-G solvation = -3018.628199 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.42697 -38.70103 -36.38458 -34.31412 -33.80664 -31.81628 -30.55919 -27.86348 -25.81634 -24.71391 -23.77576 -23.22492 -21.58503 -20.65088 -20.19260 -18.49022 -17.29863 -16.96851 -16.11432 -15.37915 -15.28683 -14.97752 -14.57991 -14.21319 -13.78668 -13.46149 -13.32449 -12.92757 -12.79413 -12.57412 -12.28760 -12.16923 -11.85188 -11.68695 -11.59967 -11.20004 -11.02470 -10.79440 -10.63122 -10.55114 -10.48536 -10.23797 -10.01412 -9.92187 -9.70795 -9.56378 -8.94905 -8.84547 -6.92533 -5.77177 -3.05832 2.57206 3.20471 3.43015 3.48816 3.51083 3.62655 4.24657 4.46217 4.57261 4.60823 4.63394 4.73238 4.92630 5.11502 5.19944 5.27103 5.38369 5.41556 5.47445 5.55391 5.55681 5.67086 5.72196 5.73398 5.77595 5.79086 5.95470 5.99665 6.06074 6.15692 6.25480 6.27281 6.29842 6.35177 6.61865 6.82525 6.88415 7.65567 7.70515 8.36587 8.41968 9.53060 10.10927 10.45704 11.45884 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.003711 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.168958 B = 7543.443207 C = 8457.667725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.087 0.913 4 C -0.135 4.135 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.716 5.716 16 C 0.544 3.456 17 O -0.541 6.541 18 C -0.179 4.179 19 H 0.123 0.877 20 C -0.123 4.123 21 C -0.126 4.126 22 C -0.081 4.081 23 C -0.143 4.143 24 C -0.100 4.100 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.017 0.983 31 H 0.018 0.982 32 H 0.383 0.617 33 H 0.254 0.746 34 H 0.401 0.599 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.586 3.467 20.531 22.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.041 3.959 3 H 0.105 0.895 4 C -0.173 4.173 5 C 0.027 3.973 6 N -0.379 5.379 7 C -0.370 4.370 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.367 5.367 16 C 0.330 3.670 17 O -0.418 6.418 18 C -0.201 4.201 19 H 0.141 0.859 20 C -0.160 4.160 21 C -0.127 4.127 22 C -0.118 4.118 23 C -0.180 4.180 24 C -0.137 4.137 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.035 0.965 31 H 0.036 0.964 32 H 0.217 0.783 33 H 0.064 0.936 34 H 0.236 0.764 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.612 4.357 20.561 22.713 hybrid contribution 0.967 -0.882 -0.714 1.491 sum -7.645 3.475 19.847 21.550 Atomic orbital electron populations 1.22152 0.95558 1.01922 1.02183 1.20962 0.93478 0.97674 0.83833 0.89464 1.22059 0.98024 1.00778 0.96420 1.20629 0.90408 0.95589 0.90699 1.42380 1.05396 1.64983 1.25095 1.19284 0.83860 1.28335 1.05496 0.91196 1.24744 0.97744 1.00924 0.97667 1.69666 1.32704 1.40814 1.15111 0.86114 0.85060 0.77219 0.77812 1.20553 1.21847 1.21821 1.46076 1.66965 1.14168 1.09485 1.19575 0.77108 0.86691 0.83591 1.90666 1.50410 1.15766 1.84987 1.22194 1.04551 1.04239 0.89073 0.85897 1.22770 0.94830 0.99792 0.98604 1.22267 0.99331 0.95245 0.95839 1.22312 1.01489 0.92515 0.95530 1.22817 1.00149 0.97721 0.97323 1.22513 0.96605 0.98238 0.96324 0.92517 0.91610 0.92576 0.91395 0.90305 0.96471 0.96376 0.78332 0.93566 0.76411 0.88202 0.87750 0.89356 0.91399 0.90278 0.91298 0.91337 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.48 37.16 0.35 -1.57 16 2 C 0.15 2.01 2.57 -67.93 -0.17 1.84 16 3 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 4 C -0.13 -2.11 4.87 -26.73 -0.13 -2.24 16 5 C 0.15 3.13 6.15 -4.04 -0.02 3.11 16 6 N -0.73 -18.83 5.60 -59.91 -0.34 -19.17 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 10 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 11 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 N -0.72 -9.23 4.53 -53.80 -0.24 -9.48 16 16 C 0.54 7.47 7.58 -10.98 -0.08 7.39 16 17 O -0.54 -9.03 14.80 5.56 0.08 -8.95 16 18 C -0.18 -1.96 6.19 -91.98 -0.57 -2.53 16 19 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 20 C -0.12 -1.11 10.24 -26.94 -0.28 -1.39 16 21 C -0.13 -1.30 2.88 -154.79 -0.45 -1.74 16 22 C -0.08 -0.88 6.47 -26.14 -0.17 -1.05 16 23 C -0.14 -1.20 8.08 -25.81 -0.21 -1.41 16 24 C -0.10 -0.86 8.10 -26.13 -0.21 -1.07 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.02 0.37 7.75 -51.93 -0.40 -0.03 16 32 H 0.38 10.23 7.67 -40.82 -0.31 9.91 16 33 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.40 4.57 8.60 -40.82 -0.35 4.22 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 1.09 8.05 -51.93 -0.42 0.68 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 346.73 15.07 5.23 5.23 Total: -1.00 -32.40 346.73 -9.10 -41.50 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -7.34 Total: 9.13 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -2.19 Total: -8.14 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.15 Total: -56.36 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.08 Total: -8.95 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.40 -9.10 -41.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497281613.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.732 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds