Wall clock time and date at job start Mon Mar 30 2020 19:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 N 1.46505 * 109.47212 * 64.99775 * 4 2 1 6 6 C 1.36936 * 119.99992 * 179.97438 * 5 4 2 7 7 H 1.08006 * 119.99834 * 0.02562 * 6 5 4 8 8 C 1.38801 * 120.00093 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00176 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00265 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46951 * 89.99797 * 10 8 6 12 12 H 1.48500 * 109.47313 * 210.00112 * 10 8 6 13 13 H 1.48501 * 109.46991 * 330.00153 * 10 8 6 14 14 C 1.52997 * 109.47024 * 119.99412 * 2 1 3 15 15 N 1.46501 * 109.47600 * 295.00248 * 14 2 1 16 16 C 1.34773 * 120.00280 * 179.97438 * 15 14 2 17 17 O 1.21276 * 119.99736 * 0.02562 * 16 15 14 18 18 C 1.50695 * 120.00036 * 179.97438 * 16 15 14 19 19 C 1.52999 * 110.91196 * 56.04087 * 18 16 15 20 20 C 1.54637 * 111.04161 * 292.02759 * 18 16 15 21 21 C 1.51095 * 104.72507 * 266.60253 * 20 18 16 22 22 C 1.30526 * 111.10459 * 343.55840 * 21 20 18 23 23 C 1.51094 * 111.10677 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 25 25 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 27 27 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 28 28 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 29 29 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 30 30 H 0.97001 * 120.00803 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.46810 * 55.00222 * 14 2 1 32 32 H 1.08998 * 109.47247 * 175.00091 * 14 2 1 33 33 H 0.96998 * 119.99495 * 0.02562 * 15 14 2 34 34 H 1.08999 * 109.47431 * 60.69838 * 19 18 16 35 35 H 1.09000 * 109.47147 * 180.69777 * 19 18 16 36 36 H 1.08997 * 109.47052 * 300.69810 * 19 18 16 37 37 H 1.09000 * 110.38187 * 25.41405 * 20 18 16 38 38 H 1.09000 * 110.38385 * 147.78673 * 20 18 16 39 39 H 1.08006 * 124.44977 * 163.58477 * 21 20 18 40 40 H 1.08008 * 124.44825 * 180.02562 * 22 21 20 41 41 H 1.09001 * 110.38945 * 257.62188 * 23 22 21 42 42 H 1.09002 * 110.48622 * 135.29468 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4424 6 6 2.0020 -0.4203 -3.6855 7 1 2.5631 -1.3377 -3.7863 8 6 1.6353 0.2967 -4.8160 9 7 0.9519 1.4149 -4.6931 10 14 2.1115 -0.3252 -6.5119 11 1 1.0411 -1.2135 -7.0319 12 1 2.2876 0.8280 -7.4306 13 1 3.3843 -1.0847 -6.4211 14 6 2.0400 -0.7211 1.2493 15 7 1.6524 0.0355 2.4424 16 6 1.9955 -0.4134 3.6660 17 8 2.6255 -1.4434 3.7793 18 6 1.5973 0.3653 4.8932 19 6 0.0831 0.5805 4.9360 20 6 2.3526 1.7127 4.9652 21 6 3.5710 1.4253 5.8114 22 6 3.4305 0.3095 6.4738 23 6 2.0954 -0.3338 6.1794 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6055 -1.7198 -1.2951 28 1 3.1264 -0.7994 -1.2055 29 1 1.1489 0.8593 -2.3517 30 1 0.6959 1.9162 -5.4830 31 1 1.6054 -1.7197 1.2952 32 1 3.1263 -0.7993 1.2057 33 1 1.1482 0.8592 2.3517 34 1 -0.4204 -0.3857 4.9680 35 1 -0.1772 1.1554 5.8247 36 1 -0.2317 1.1250 4.0458 37 1 2.6507 2.0346 3.9674 38 1 1.7308 2.4716 5.4400 39 1 4.4433 2.0601 5.8619 40 1 4.1714 -0.1003 7.1444 41 1 1.4000 -0.1580 7.0001 42 1 2.2168 -1.4034 6.0081 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753629073.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:59 Heat of formation + Delta-G solvation = -25.213616 kcal Electronic energy + Delta-G solvation = -20193.090169 eV Core-core repulsion = 17173.011807 eV Total energy + Delta-G solvation = -3020.078362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.68519 -38.00009 -36.62855 -34.39506 -32.74711 -31.74538 -29.97945 -28.43366 -26.59069 -25.87491 -25.30183 -22.98153 -21.82858 -20.23646 -19.18941 -19.07138 -17.33241 -16.84333 -16.16955 -15.69321 -15.38828 -14.70825 -14.36176 -14.25840 -13.66658 -13.39482 -13.11036 -13.03619 -12.92042 -12.56994 -12.42969 -12.35684 -12.27052 -12.04063 -11.51195 -11.39640 -11.07083 -10.95336 -10.89628 -10.68736 -10.56827 -10.40944 -10.06231 -9.78163 -9.63824 -9.12649 -8.96549 -8.87606 -6.92272 -5.77124 -3.05490 2.07425 2.63292 3.16676 3.43989 3.49287 3.50900 4.15727 4.35815 4.52202 4.59617 4.81564 5.00190 5.07501 5.12210 5.22885 5.31010 5.38721 5.41271 5.47504 5.51802 5.57965 5.63752 5.73587 5.81414 5.83416 5.89019 5.97458 6.01701 6.12046 6.25108 6.32200 6.39501 6.52107 6.65196 6.67308 6.77616 6.87077 7.52116 7.70556 8.23634 8.42082 9.53356 10.10641 10.45563 11.45918 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.042208 B = 0.003151 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.219773 B = 8884.238850 C = 8976.913296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.126 3.874 15 N -0.723 5.723 16 C 0.527 3.473 17 O -0.539 6.539 18 C -0.090 4.090 19 C -0.135 4.135 20 C -0.087 4.087 21 C -0.176 4.176 22 C -0.154 4.154 23 C -0.084 4.084 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.041 0.959 27 H 0.022 0.978 28 H 0.021 0.979 29 H 0.384 0.616 30 H 0.255 0.745 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.399 0.601 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.081 0.919 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.747 1.212 23.042 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.003 3.997 15 N -0.374 5.374 16 C 0.312 3.688 17 O -0.415 6.415 18 C -0.093 4.093 19 C -0.193 4.193 20 C -0.124 4.124 21 C -0.194 4.194 22 C -0.172 4.172 23 C -0.122 4.122 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.218 0.782 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.234 0.766 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.099 0.901 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.221 0.353 22.958 22.961 hybrid contribution -0.060 0.417 -1.066 1.146 sum -0.281 0.770 21.891 21.907 Atomic orbital electron populations 1.21788 0.94678 1.01922 1.01439 1.21548 0.96699 1.00469 0.94210 0.90587 1.20575 0.96602 0.94205 0.85388 1.42338 1.66941 1.27669 1.00586 1.19244 1.28647 1.05413 0.83675 0.91157 1.24730 1.01050 0.97392 0.97854 1.69653 1.43663 1.16566 1.28485 0.86179 0.78041 0.77517 0.84407 1.21728 1.21782 1.20742 1.21413 1.00086 0.95259 0.82969 1.46033 1.57637 1.27875 1.05864 1.20195 0.78992 0.85305 0.84290 1.90676 1.39733 1.24561 1.86549 1.21642 0.97172 0.96368 0.94148 1.21782 0.92061 1.02609 1.02829 1.21440 0.94989 0.95467 1.00511 1.23201 0.98549 0.98502 0.99162 1.23237 0.97665 0.96411 0.99866 1.21353 0.94659 1.01445 0.94708 0.91157 0.92828 0.93950 0.96008 0.96151 0.78217 0.93535 0.91406 0.91451 0.76586 0.91737 0.91254 0.91772 0.90663 0.89548 0.85730 0.85786 0.90089 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.94 37.16 0.33 -1.74 16 2 C -0.11 -1.70 2.46 -90.62 -0.22 -1.92 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 4 C 0.16 3.21 5.65 -4.04 -0.02 3.18 16 5 N -0.73 -18.36 5.33 -59.91 -0.32 -18.68 16 6 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 7 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.16 13.06 55.49 0.72 -27.43 16 10 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.13 1.78 5.06 -4.04 -0.02 1.76 16 15 N -0.72 -8.60 5.12 -60.30 -0.31 -8.90 16 16 C 0.53 6.83 6.51 -10.99 -0.07 6.75 16 17 O -0.54 -9.08 15.53 5.56 0.09 -9.00 16 18 C -0.09 -0.86 0.84 -153.95 -0.13 -0.99 16 19 C -0.14 -0.98 8.36 37.16 0.31 -0.67 16 20 C -0.09 -0.74 5.93 -26.83 -0.16 -0.90 16 21 C -0.18 -1.62 10.77 -35.70 -0.38 -2.00 16 22 C -0.15 -1.46 10.77 -35.70 -0.38 -1.85 16 23 C -0.08 -0.81 5.72 -26.84 -0.15 -0.96 16 24 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.50 7.18 -51.93 -0.37 0.12 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.38 10.00 6.85 -40.82 -0.28 9.72 16 30 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.40 3.88 6.93 -40.82 -0.28 3.60 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.40 8.12 -51.93 -0.42 -0.03 16 36 H 0.06 0.42 7.46 -51.93 -0.39 0.03 16 37 H 0.07 0.66 7.85 -51.93 -0.41 0.26 16 38 H 0.09 0.58 7.88 -51.93 -0.41 0.17 16 39 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 40 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 41 H 0.08 0.61 7.89 -51.93 -0.41 0.21 16 42 H 0.09 1.01 7.01 -51.93 -0.36 0.65 16 LS Contribution 340.01 15.07 5.12 5.12 Total: -1.00 -32.51 340.01 -7.93 -40.43 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.06 Total: 7.70 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -1.15 Total: -6.71 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.10 Total: -55.02 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.51 -7.93 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753629073.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.220 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds