Wall clock time and date at job start Mon Mar 30 2020 19:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46970 * 2 1 4 4 C 1.53004 * 109.47025 * 119.99807 * 2 1 3 5 5 N 1.46494 * 109.46947 * 294.99713 * 4 2 1 6 6 C 1.36938 * 120.00143 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99613 * 0.02562 * 6 5 4 8 8 C 1.38809 * 120.00590 * 180.02562 * 6 5 4 9 9 N 1.31621 * 119.99803 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00424 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46837 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47399 * 119.99686 * 10 8 6 13 13 H 1.48500 * 109.47198 * 239.99715 * 10 8 6 14 14 C 1.53001 * 109.46942 * 239.99738 * 2 1 3 15 15 N 1.46495 * 109.47096 * 64.99980 * 14 2 1 16 16 C 1.34780 * 119.99694 * 179.97438 * 15 14 2 17 17 O 1.21278 * 120.00383 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99627 * 180.02562 * 16 15 14 19 19 C 1.53000 * 110.94862 * 56.01433 * 18 16 15 20 20 C 1.54638 * 111.03561 * 180.02562 * 18 16 15 21 21 C 1.51106 * 104.82455 * 93.34205 * 20 18 16 22 22 C 1.30798 * 110.94366 * 16.48954 * 21 20 18 23 23 C 1.51098 * 111.15292 * 359.95455 * 22 21 20 24 24 H 1.08997 * 109.46966 * 299.99958 * 1 2 3 25 25 H 1.08999 * 109.47108 * 60.00300 * 1 2 3 26 26 H 1.09006 * 109.46951 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47050 * 55.00378 * 4 2 1 28 28 H 1.08998 * 109.46919 * 175.00215 * 4 2 1 29 29 H 0.97004 * 120.00485 * 0.02562 * 5 4 2 30 30 H 0.96995 * 120.00596 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.47284 * 304.99273 * 14 2 1 32 32 H 1.09002 * 109.46619 * 185.00094 * 14 2 1 33 33 H 0.96998 * 120.00035 * 0.02562 * 15 14 2 34 34 H 1.08998 * 109.47362 * 183.98592 * 19 18 16 35 35 H 1.09005 * 109.46638 * 303.99004 * 19 18 16 36 36 H 1.09001 * 109.46979 * 63.98168 * 19 18 16 37 37 H 1.09002 * 110.38811 * 212.21136 * 20 18 16 38 38 H 1.09000 * 110.38511 * 334.47719 * 20 18 16 39 39 H 1.08002 * 124.44651 * 196.49016 * 21 20 18 40 40 H 1.08002 * 124.39680 * 179.97438 * 22 21 20 41 41 H 1.09008 * 110.38603 * 224.78131 * 23 22 21 42 42 H 1.08997 * 110.48409 * 102.45546 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 0.0355 2.4423 6 6 2.0020 -0.4201 3.6855 7 1 2.5636 -1.3370 3.7864 8 6 1.6343 0.2966 4.8161 9 7 0.9502 1.4143 4.6931 10 14 2.1117 -0.3245 6.5119 11 1 2.8724 -1.5928 6.3784 12 1 2.9563 0.6907 7.1912 13 1 0.8855 -0.5653 7.3141 14 6 2.0400 -0.7213 -1.2492 15 7 1.6524 0.0352 -2.4423 16 6 1.9964 -0.4133 -3.6659 17 8 2.6264 -1.4434 -3.7792 18 6 1.5982 0.3652 -4.8932 19 6 2.1088 1.8055 -4.8169 20 6 2.0965 -0.3334 -6.1796 21 6 0.9400 -1.1996 -6.6219 22 6 -0.1691 -0.8357 -6.0318 23 6 0.0662 0.3302 -5.1000 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6054 -1.7197 1.2952 28 1 3.1263 -0.7994 1.2057 29 1 1.1483 0.8592 2.3517 30 1 0.6936 1.9153 5.4830 31 1 1.6054 -1.7199 -1.2950 32 1 3.1263 -0.7995 -1.2055 33 1 1.1488 0.8593 -2.3517 34 1 1.7484 2.3650 -5.6801 35 1 1.7430 2.2727 -3.9025 36 1 3.1988 1.8048 -4.8136 37 1 2.3324 0.4051 -6.9458 38 1 2.9704 -0.9480 -5.9637 39 1 1.0203 -2.0105 -7.3307 40 1 -1.1276 -1.3077 -6.1900 41 1 -0.4416 0.1652 -4.1496 42 1 -0.2767 1.2586 -5.5566 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753629074.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:01 Heat of formation + Delta-G solvation = -25.393643 kcal Electronic energy + Delta-G solvation = -20200.407350 eV Core-core repulsion = 17180.321182 eV Total energy + Delta-G solvation = -3020.086169 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.68003 -37.99057 -36.62946 -34.39758 -32.74863 -31.73093 -29.97584 -28.44538 -26.60337 -25.84577 -25.30887 -22.98496 -21.82897 -20.23771 -19.18279 -19.09174 -17.33538 -16.84447 -16.13863 -15.81004 -15.21142 -14.84187 -14.36783 -14.21436 -13.64157 -13.37972 -13.21704 -12.96519 -12.87677 -12.64273 -12.42105 -12.37856 -12.22974 -12.03746 -11.52469 -11.40496 -11.06439 -10.94130 -10.91788 -10.70137 -10.56088 -10.40753 -10.03477 -9.78375 -9.64319 -9.11869 -8.96561 -8.88293 -6.92367 -5.77452 -3.05745 2.05774 2.63128 3.16447 3.43406 3.49440 3.51507 4.15590 4.35879 4.52373 4.59457 4.81492 4.99714 5.06801 5.12818 5.22594 5.31307 5.38286 5.41187 5.47103 5.51650 5.57815 5.63565 5.73388 5.81618 5.83868 5.88795 5.97676 6.00998 6.11982 6.24996 6.31337 6.39511 6.51995 6.65094 6.66332 6.77427 6.87034 7.51997 7.70956 8.23530 8.41788 9.53116 10.10433 10.45262 11.45673 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.046085 B = 0.003133 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.429898 B = 8934.024178 C = 9041.854564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.126 3.874 15 N -0.723 5.723 16 C 0.527 3.473 17 O -0.538 6.538 18 C -0.090 4.090 19 C -0.136 4.136 20 C -0.085 4.085 21 C -0.154 4.154 22 C -0.177 4.177 23 C -0.086 4.086 24 H 0.069 0.931 25 H 0.041 0.959 26 H 0.053 0.947 27 H 0.022 0.978 28 H 0.021 0.979 29 H 0.384 0.616 30 H 0.254 0.746 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.399 0.601 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.074 0.926 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.723 0.581 -23.124 23.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.003 3.997 15 N -0.374 5.374 16 C 0.312 3.688 17 O -0.415 6.415 18 C -0.093 4.093 19 C -0.193 4.193 20 C -0.122 4.122 21 C -0.172 4.172 22 C -0.195 4.195 23 C -0.124 4.124 24 H 0.088 0.912 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.218 0.782 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.234 0.766 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.093 0.907 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.182 -0.278 -23.041 23.073 hybrid contribution -0.263 0.310 1.056 1.131 sum -1.444 0.032 -21.985 22.032 Atomic orbital electron populations 1.21788 0.94695 1.01926 1.01436 1.21549 0.96690 1.00470 0.94211 0.90566 1.20573 0.96605 0.94204 0.85386 1.42348 1.66899 1.27698 1.00605 1.19291 1.28496 1.05450 0.83657 0.91103 1.24735 1.01045 0.97428 0.97865 1.69663 1.43662 1.16648 1.28373 0.86108 0.77596 0.77844 0.84614 1.20531 1.21876 1.21883 1.21413 1.00084 0.95266 0.82964 1.46033 1.57696 1.27827 1.05862 1.20195 0.78994 0.85322 0.84265 1.90676 1.39924 1.24373 1.86537 1.21642 0.97163 0.96457 0.94055 1.21791 1.01887 0.92828 1.02817 1.21356 0.98712 0.97872 0.94257 1.23318 0.94873 0.99052 0.99917 1.23266 0.98778 0.98273 0.99151 1.21434 0.92962 0.98260 0.99702 0.91153 0.93957 0.92835 0.96013 0.96138 0.78217 0.93587 0.91436 0.91416 0.76581 0.91243 0.91770 0.91699 0.90072 0.89366 0.85734 0.85759 0.90699 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.94 37.16 0.33 -1.75 16 2 C -0.11 -1.70 2.46 -90.62 -0.22 -1.92 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.16 3.21 5.65 -4.04 -0.02 3.18 16 5 N -0.73 -18.35 5.33 -59.91 -0.32 -18.67 16 6 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 7 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -28.14 13.06 55.49 0.72 -27.41 16 10 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 C 0.13 1.77 5.06 -4.04 -0.02 1.75 16 15 N -0.72 -8.59 5.11 -60.29 -0.31 -8.90 16 16 C 0.53 6.82 6.52 -10.98 -0.07 6.75 16 17 O -0.54 -9.08 15.53 5.56 0.09 -8.99 16 18 C -0.09 -0.86 0.84 -153.94 -0.13 -0.99 16 19 C -0.14 -1.00 8.42 37.16 0.31 -0.69 16 20 C -0.08 -0.81 5.71 -26.82 -0.15 -0.97 16 21 C -0.15 -1.45 10.80 -35.77 -0.39 -1.83 16 22 C -0.18 -1.60 10.78 -35.78 -0.39 -1.99 16 23 C -0.09 -0.72 5.92 -26.83 -0.16 -0.88 16 24 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 25 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.38 9.99 6.85 -40.82 -0.28 9.71 16 30 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.40 3.88 6.88 -40.82 -0.28 3.60 16 34 H 0.07 0.40 8.05 -51.93 -0.42 -0.02 16 35 H 0.06 0.43 7.37 -51.93 -0.38 0.05 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.62 7.89 -51.93 -0.41 0.21 16 38 H 0.09 1.01 7.01 -51.93 -0.36 0.65 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.07 0.65 7.85 -51.92 -0.41 0.24 16 42 H 0.09 0.57 7.82 -51.93 -0.41 0.17 16 LS Contribution 339.84 15.07 5.12 5.12 Total: -1.00 -32.50 339.84 -7.92 -40.42 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -7.05 Total: 7.65 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -1.15 Total: -6.68 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.10 Total: -54.98 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.50 -7.92 -40.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753629074.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.028 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds