Wall clock time and date at job start Mon Mar 30 2020 19:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47294 * 90.00155 * 10 8 6 12 12 H 1.48499 * 109.47218 * 210.00015 * 10 8 6 13 13 H 1.48496 * 109.47166 * 329.99846 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21282 * 119.99801 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00222 * 179.97438 * 16 15 14 19 19 C 1.53891 * 113.58863 * 279.21517 * 18 16 15 20 20 C 1.53420 * 86.82384 * 220.45462 * 19 18 16 21 21 C 1.52460 * 128.60476 * 165.10192 * 20 19 18 22 22 C 1.52461 * 128.51818 * 245.01676 * 20 19 18 23 23 C 1.53246 * 87.72162 * 25.01871 * 20 19 18 24 24 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 25 25 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 26 26 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 28 28 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 29 29 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 30 30 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 31 31 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 32 32 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 33 33 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 34 34 H 1.08999 * 112.82819 * 50.33635 * 18 16 15 35 35 H 1.08995 * 113.65037 * 334.92969 * 19 18 16 36 36 H 1.09003 * 113.64080 * 105.92777 * 19 18 16 37 37 H 1.08997 * 117.51394 * 224.96263 * 21 20 19 38 38 H 1.09003 * 117.51272 * 10.06402 * 21 20 19 39 39 H 1.09009 * 117.51377 * 349.80234 * 22 20 19 40 40 H 1.09001 * 117.51870 * 134.87019 * 22 20 19 41 41 H 1.09008 * 113.64602 * 220.48308 * 23 20 19 42 42 H 1.09001 * 113.73165 * 89.49731 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.4152 0.2239 6.8982 12 1 1.0697 0.0908 7.4992 13 1 2.1727 -1.8181 6.4894 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6272 -1.4426 -3.7792 18 6 1.5973 0.3651 -4.8933 19 6 0.1441 0.1165 -5.3344 20 6 0.6713 0.1173 -6.7752 21 6 -0.0222 -0.3707 -8.0422 22 6 0.3663 1.1034 -7.8973 23 6 2.0347 -0.2973 -6.2116 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1264 -0.7995 1.2056 28 1 1.6054 -1.7198 1.2950 29 1 1.1483 0.8591 2.3518 30 1 0.6807 1.9070 5.4838 31 1 3.1264 -0.7994 -1.2056 32 1 1.6054 -1.7198 -1.2953 33 1 1.1483 0.8592 -2.3518 34 1 1.8588 1.4212 -4.8281 35 1 -0.2513 -0.8474 -5.0141 36 1 -0.5278 0.9459 -5.1133 37 1 0.5612 -0.9796 -8.7328 38 1 -1.0806 -0.6217 -7.9721 39 1 -0.4367 1.8218 -7.7319 40 1 1.2051 1.4645 -8.4923 41 1 2.8765 0.2007 -6.6929 42 1 2.1682 -1.3764 -6.1355 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753629841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:03 Heat of formation + Delta-G solvation = 6.898345 kcal Electronic energy + Delta-G solvation = -19652.134151 eV Core-core repulsion = 16633.448268 eV Total energy + Delta-G solvation = -3018.685883 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.59435 -38.67626 -36.76311 -34.33772 -33.87630 -32.41039 -30.04424 -26.90458 -26.05489 -25.69022 -24.05274 -22.79590 -22.22826 -20.46709 -19.67111 -18.66033 -17.45721 -16.84133 -16.12538 -15.84142 -15.45073 -15.06126 -14.77150 -14.32791 -14.09237 -13.59886 -13.15867 -12.85014 -12.72570 -12.57348 -12.33726 -12.25530 -12.07143 -11.83215 -11.73581 -11.06271 -10.90890 -10.71249 -10.66032 -10.62002 -10.54810 -10.40877 -10.07367 -10.01352 -9.73919 -9.58289 -8.99934 -8.87585 -6.92292 -5.77210 -3.05516 2.60317 3.14915 3.43960 3.46273 3.49352 3.50864 4.00927 4.24146 4.36426 4.49130 4.57007 4.59695 4.92764 5.03873 5.11396 5.23200 5.28971 5.33691 5.39586 5.43333 5.50119 5.51499 5.57855 5.69082 5.78900 5.82410 5.91217 5.96723 6.00939 6.04320 6.12064 6.25597 6.39720 6.51829 6.65355 6.77752 6.87244 7.52506 7.70535 8.23277 8.42114 9.53293 10.10669 10.45494 11.45872 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.056838 B = 0.002722 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.510420 B =10283.253336 C =10555.484786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.125 3.875 15 N -0.723 5.723 16 C 0.519 3.481 17 O -0.544 6.544 18 C -0.133 4.133 19 C -0.082 4.082 20 C -0.164 4.164 21 C -0.166 4.166 22 C -0.152 4.152 23 C -0.075 4.075 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.021 0.979 28 H 0.022 0.978 29 H 0.384 0.616 30 H 0.255 0.745 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.400 0.600 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.531 0.375 -24.561 24.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.369 4.369 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.002 3.998 15 N -0.374 5.374 16 C 0.305 3.695 17 O -0.421 6.421 18 C -0.154 4.154 19 C -0.119 4.119 20 C -0.164 4.164 21 C -0.203 4.203 22 C -0.188 4.188 23 C -0.112 4.112 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.218 0.782 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.235 0.765 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.004 -0.486 -24.476 24.563 hybrid contribution -0.176 0.466 1.086 1.195 sum -2.181 -0.019 -23.390 23.491 Atomic orbital electron populations 1.21787 0.94682 1.01901 1.01464 1.21551 0.96700 1.00480 0.94219 0.90563 1.20575 0.96609 0.94197 0.85400 1.42344 1.67038 1.27590 1.00580 1.19244 1.28575 1.05469 0.83638 0.91154 1.24740 1.01020 0.97463 0.97875 1.69659 1.43509 1.16736 1.28479 0.86172 0.77562 0.78036 0.84333 1.21726 1.21784 1.20751 1.21417 1.00082 0.95275 0.83062 1.46096 1.57500 1.27874 1.05957 1.20440 0.79035 0.85593 0.84399 1.90689 1.39983 1.24723 1.86701 1.22623 0.98847 1.00948 0.92960 1.22431 0.94235 1.02727 0.92522 1.22196 0.98433 1.05588 0.90200 1.22802 1.00979 0.97016 0.99478 1.22796 1.03153 0.92734 1.00154 1.22367 0.94481 1.01919 0.92479 0.91178 0.93901 0.92860 0.96141 0.96021 0.78214 0.93536 0.91429 0.91447 0.76516 0.86854 0.89197 0.90510 0.88643 0.88666 0.88553 0.88570 0.91003 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.94 37.16 0.33 -1.74 16 2 C -0.11 -1.70 2.46 -90.62 -0.22 -1.93 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 4 C 0.16 3.20 5.65 -4.04 -0.02 3.18 16 5 N -0.73 -18.38 5.33 -59.91 -0.32 -18.70 16 6 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 7 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 8 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 10 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.13 1.75 5.06 -4.04 -0.02 1.73 16 15 N -0.72 -8.43 5.28 -60.29 -0.32 -8.74 16 16 C 0.52 6.51 7.35 -10.99 -0.08 6.43 16 17 O -0.54 -8.99 15.90 5.56 0.09 -8.90 16 18 C -0.13 -1.20 4.14 -90.85 -0.38 -1.58 16 19 C -0.08 -0.66 7.66 -26.05 -0.20 -0.86 16 20 C -0.16 -1.29 3.09 -154.72 -0.48 -1.77 16 21 C -0.17 -1.15 10.53 -26.94 -0.28 -1.44 16 22 C -0.15 -0.98 10.53 -26.94 -0.28 -1.27 16 23 C -0.07 -0.69 7.42 -26.14 -0.19 -0.88 16 24 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 25 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.38 10.01 6.85 -40.82 -0.28 9.73 16 30 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.40 3.76 7.65 -40.82 -0.31 3.45 16 34 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 42 H 0.10 1.08 7.44 -51.93 -0.39 0.69 16 LS Contribution 345.16 15.07 5.20 5.20 Total: -1.00 -32.29 345.16 -8.91 -41.20 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -7.19 Total: 7.43 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.08 Total: -7.50 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.09 Total: -54.92 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.29 -8.91 -41.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753629841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.095 kcal (2) G-P(sol) polarization free energy of solvation -32.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds