Wall clock time and date at job start Mon Mar 30 2020 19:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 N 1.46505 * 109.47212 * 64.99775 * 4 2 1 6 6 C 1.36936 * 119.99992 * 179.97438 * 5 4 2 7 7 H 1.08006 * 119.99834 * 0.02562 * 6 5 4 8 8 C 1.38801 * 120.00093 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00176 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00265 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46725 * 59.99976 * 10 8 6 12 12 H 1.48498 * 109.47172 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46920 * 300.00189 * 10 8 6 14 14 C 1.52997 * 109.47024 * 119.99412 * 2 1 3 15 15 N 1.46501 * 109.47600 * 295.00248 * 14 2 1 16 16 C 1.34773 * 120.00280 * 179.97438 * 15 14 2 17 17 O 1.21276 * 119.99736 * 0.02562 * 16 15 14 18 18 C 1.50695 * 120.00036 * 179.97438 * 16 15 14 19 19 C 1.53888 * 113.59276 * 279.21972 * 18 16 15 20 20 C 1.53423 * 86.82556 * 220.45350 * 19 18 16 21 21 C 1.52458 * 128.60310 * 165.09580 * 20 19 18 22 22 C 1.52455 * 128.51988 * 245.00875 * 20 19 18 23 23 C 1.53257 * 87.71865 * 25.01720 * 20 19 18 24 24 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 25 25 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 26 26 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 28 28 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 29 29 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 30 30 H 0.97001 * 120.00803 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.46810 * 55.00222 * 14 2 1 32 32 H 1.08998 * 109.47247 * 175.00091 * 14 2 1 33 33 H 0.97003 * 119.99573 * 359.97438 * 15 14 2 34 34 H 1.09000 * 112.82842 * 50.33706 * 18 16 15 35 35 H 1.09001 * 113.64669 * 334.93010 * 19 18 16 36 36 H 1.09002 * 113.64260 * 105.93083 * 19 18 16 37 37 H 1.08998 * 117.51207 * 224.96316 * 21 20 19 38 38 H 1.09000 * 117.51239 * 10.06791 * 21 20 19 39 39 H 1.09005 * 117.51562 * 349.81370 * 22 20 19 40 40 H 1.09000 * 117.51174 * 134.86660 * 22 20 19 41 41 H 1.08999 * 113.64455 * 220.48188 * 23 20 19 42 42 H 1.09006 * 113.72560 * 89.49456 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4424 6 6 2.0020 -0.4203 -3.6855 7 1 2.5631 -1.3377 -3.7863 8 6 1.6353 0.2967 -4.8160 9 7 0.9519 1.4149 -4.6931 10 14 2.1115 -0.3252 -6.5119 11 1 1.5180 -1.6687 -6.7310 12 1 1.6039 0.6140 -7.5441 13 1 3.5906 -0.4157 -6.6086 14 6 2.0400 -0.7211 1.2493 15 7 1.6524 0.0355 2.4424 16 6 1.9955 -0.4134 3.6660 17 8 2.6255 -1.4434 3.7793 18 6 1.5973 0.3653 4.8932 19 6 2.5237 1.5567 5.1942 20 6 2.4042 1.1662 6.6731 21 6 3.2636 1.6179 7.8486 22 6 1.7699 1.9530 7.8146 23 6 2.0946 -0.2609 6.2081 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.6055 -1.7198 -1.2951 28 1 3.1264 -0.7994 -1.2055 29 1 1.1489 0.8593 -2.3517 30 1 0.6959 1.9162 -5.4830 31 1 1.6054 -1.7197 1.2952 32 1 3.1263 -0.7993 1.2057 33 1 1.1488 0.8596 2.3517 34 1 0.5381 0.6223 4.9058 35 1 3.5298 1.4408 4.7913 36 1 2.0810 2.5247 4.9596 37 1 3.5925 0.8551 8.5542 38 1 3.9665 2.4326 7.6747 39 1 1.4904 2.9882 7.6183 40 1 1.1159 1.4108 8.4974 41 1 1.3086 -0.7479 6.7852 42 1 2.9803 -0.8848 6.0877 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753629843.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:05 Heat of formation + Delta-G solvation = 6.996607 kcal Electronic energy + Delta-G solvation = -19638.179175 eV Core-core repulsion = 16619.497553 eV Total energy + Delta-G solvation = -3018.681622 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.59250 -38.67500 -36.76200 -34.33644 -33.87422 -32.40931 -30.04280 -26.90542 -26.05593 -25.68222 -24.04943 -22.79229 -22.22662 -20.46229 -19.67509 -18.66259 -17.44469 -16.83134 -16.13123 -15.83172 -15.41427 -15.20713 -14.64534 -14.30314 -14.12452 -13.61762 -13.11387 -12.87588 -12.78252 -12.52056 -12.36924 -12.23900 -12.00578 -11.82802 -11.77810 -11.05939 -10.89745 -10.70138 -10.66554 -10.60210 -10.56273 -10.40858 -10.09432 -10.01272 -9.73527 -9.58148 -8.99861 -8.87049 -6.92237 -5.76826 -3.05261 2.60394 3.15077 3.44790 3.46557 3.49007 3.50230 4.01323 4.24379 4.36770 4.49538 4.57365 4.59891 4.92996 5.03413 5.12033 5.23071 5.29339 5.34196 5.39698 5.43782 5.50656 5.51923 5.58009 5.69299 5.79337 5.82573 5.91469 5.97204 6.00662 6.04610 6.12188 6.25750 6.39873 6.51918 6.65509 6.77809 6.87375 7.52583 7.70151 8.23344 8.42414 9.53528 10.10884 10.45787 11.46162 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.049358 B = 0.002729 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.146826 B =10256.250822 C =10423.740745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.125 3.875 15 N -0.723 5.723 16 C 0.519 3.481 17 O -0.544 6.544 18 C -0.132 4.132 19 C -0.082 4.082 20 C -0.164 4.164 21 C -0.166 4.166 22 C -0.152 4.152 23 C -0.075 4.075 24 H 0.042 0.958 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.022 0.978 28 H 0.021 0.979 29 H 0.384 0.616 30 H 0.255 0.745 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.400 0.600 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.081 1.891 24.390 24.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.002 3.998 15 N -0.374 5.374 16 C 0.305 3.695 17 O -0.421 6.421 18 C -0.154 4.154 19 C -0.119 4.119 20 C -0.164 4.164 21 C -0.203 4.203 22 C -0.188 4.188 23 C -0.112 4.112 24 H 0.061 0.939 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.218 0.782 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.235 0.765 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.438 1.036 24.303 24.329 hybrid contribution -0.230 0.418 -1.080 1.181 sum 0.208 1.454 23.222 23.269 Atomic orbital electron populations 1.21788 0.94683 1.01913 1.01458 1.21549 0.96700 1.00474 0.94219 0.90569 1.20577 0.96591 0.94211 0.85400 1.42333 1.66942 1.27679 1.00583 1.19196 1.28704 1.05429 0.83682 0.91211 1.24733 1.01033 0.97410 0.97866 1.69643 1.43581 1.16567 1.28618 0.86250 0.78025 0.77705 0.84111 1.21262 1.21699 1.21260 1.21416 1.00069 0.95285 0.83065 1.46098 1.57582 1.27782 1.05970 1.20438 0.79209 0.85388 0.84430 1.90687 1.40144 1.24536 1.86727 1.22620 1.01468 0.98007 0.93273 1.22436 0.99742 0.96964 0.92805 1.22198 1.06026 0.97531 0.90668 1.22801 0.93633 1.03321 1.00514 1.22792 0.96009 1.00401 0.99635 1.22368 1.01884 0.93797 0.93188 0.93914 0.91171 0.92849 0.96015 0.96159 0.78214 0.93478 0.91419 0.91460 0.76517 0.86874 0.89173 0.90494 0.88642 0.88654 0.88553 0.88579 0.91015 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.94 37.16 0.33 -1.75 16 2 C -0.11 -1.70 2.46 -90.62 -0.22 -1.93 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 4 C 0.16 3.21 5.65 -4.04 -0.02 3.18 16 5 N -0.73 -18.38 5.33 -59.91 -0.32 -18.70 16 6 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 7 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 9 N -0.94 -28.21 13.06 55.49 0.72 -27.49 16 10 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.13 1.75 5.06 -4.04 -0.02 1.73 16 15 N -0.72 -8.43 5.28 -60.30 -0.32 -8.75 16 16 C 0.52 6.51 7.35 -10.99 -0.08 6.43 16 17 O -0.54 -8.99 15.90 5.56 0.09 -8.90 16 18 C -0.13 -1.20 4.14 -90.85 -0.38 -1.58 16 19 C -0.08 -0.67 7.66 -26.05 -0.20 -0.87 16 20 C -0.16 -1.30 3.09 -154.71 -0.48 -1.78 16 21 C -0.17 -1.16 10.53 -26.95 -0.28 -1.45 16 22 C -0.15 -0.99 10.53 -26.95 -0.28 -1.27 16 23 C -0.07 -0.69 7.42 -26.14 -0.19 -0.88 16 24 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 25 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.38 10.01 6.85 -40.82 -0.28 9.73 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.40 3.76 7.66 -40.82 -0.31 3.45 16 34 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.10 1.08 7.44 -51.93 -0.39 0.70 16 LS Contribution 345.16 15.07 5.20 5.20 Total: -1.00 -32.26 345.16 -8.91 -41.17 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.19 Total: 7.53 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -2.08 Total: -7.55 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.09 Total: -54.94 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.26 -8.91 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753629843.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.168 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds