Wall clock time and date at job start Mon Mar 30 2020 19:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48043 * 111.00141 * 2 1 4 4 C 1.54387 * 107.01959 * 214.48042 * 3 2 1 5 5 C 1.52908 * 104.67273 * 2.23988 * 4 3 2 6 6 C 1.53454 * 112.19926 * 142.10510 * 5 4 3 7 7 C 1.54631 * 102.74739 * 154.99083 * 6 5 4 8 8 N 1.47161 * 107.33829 * 339.33453 * 7 6 5 9 9 C 1.34777 * 125.59718 * 179.08553 * 8 7 6 10 10 O 1.21288 * 119.99481 * 180.02562 * 9 8 7 11 11 C 1.50700 * 120.00529 * 0.02562 * 9 8 7 12 12 C 1.52994 * 109.47360 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.46804 * 180.02562 * 12 11 9 14 14 H 1.07995 * 120.00604 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99460 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00341 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99712 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47150 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47338 * 119.99408 * 17 15 13 20 20 H 1.48497 * 109.47151 * 239.99807 * 17 15 13 21 21 C 1.47753 * 108.80055 * 359.08897 * 8 7 6 22 22 C 1.48855 * 111.00106 * 242.28465 * 2 1 3 23 23 H 1.09006 * 109.46884 * 59.87553 * 1 2 3 24 24 H 1.09003 * 109.47422 * 179.87529 * 1 2 3 25 25 H 1.09001 * 109.47319 * 299.87676 * 1 2 3 26 26 H 1.08992 * 109.92356 * 95.14009 * 3 2 1 27 27 H 1.08995 * 109.92435 * 333.82096 * 3 2 1 28 28 H 1.09005 * 110.39326 * 121.03613 * 4 3 2 29 29 H 1.09002 * 110.39643 * 243.32058 * 4 3 2 30 30 H 1.09000 * 110.75597 * 273.30264 * 6 5 4 31 31 H 1.08995 * 110.76184 * 36.48845 * 6 5 4 32 32 H 1.09002 * 109.87209 * 98.77174 * 7 6 5 33 33 H 1.08996 * 109.87465 * 219.75434 * 7 6 5 34 34 H 1.09000 * 109.46459 * 300.00156 * 11 9 8 35 35 H 1.08998 * 109.46564 * 59.99442 * 11 9 8 36 36 H 1.09004 * 109.46823 * 299.99567 * 12 11 9 37 37 H 1.08995 * 109.47615 * 59.99640 * 12 11 9 38 38 H 0.96995 * 119.99502 * 180.02562 * 16 15 13 39 39 H 1.08999 * 110.39445 * 263.54389 * 21 8 7 40 40 H 1.09000 * 110.39910 * 141.14494 * 21 8 7 41 41 H 1.09004 * 110.69013 * 39.61020 * 22 2 1 42 42 H 1.08999 * 110.84252 * 276.48046 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9995 1.3821 0.0000 4 6 3.2976 1.3678 -0.8357 5 6 3.4190 -0.0713 -1.3380 6 6 3.9594 -0.1411 -2.7726 7 6 4.5960 -1.5491 -2.8293 8 7 4.8564 -1.9688 -1.4430 9 6 5.3914 -3.1475 -1.0676 10 8 5.5617 -3.3888 0.1088 11 6 5.7780 -4.1656 -2.1093 12 6 6.3557 -5.4044 -1.4220 13 6 6.7429 -6.4221 -2.4638 14 1 6.5916 -6.2071 -3.5113 15 6 7.2893 -7.6283 -2.0796 16 7 7.4732 -7.8904 -0.8040 17 14 7.7686 -8.8902 -3.3708 18 1 7.4617 -8.3566 -4.7223 19 1 9.2224 -9.1749 -3.2691 20 1 7.0021 -10.1423 -3.1478 21 6 4.4348 -0.8859 -0.5305 22 6 2.0024 -0.6463 -1.2302 23 1 -0.3633 0.5158 -0.8889 24 1 -0.3634 -1.0277 -0.0022 25 1 -0.3634 0.5119 0.8911 26 1 2.2184 1.6959 1.0206 27 1 1.2742 2.0584 -0.4521 28 1 3.2161 2.0577 -1.6757 29 1 4.1533 1.6283 -0.2129 30 1 3.1482 -0.0546 -3.4955 31 1 4.7090 0.6320 -2.9411 32 1 3.9080 -2.2480 -3.3050 33 1 5.5307 -1.5109 -3.3887 34 1 4.8970 -4.4479 -2.6857 35 1 6.5264 -3.7370 -2.7758 36 1 7.2366 -5.1222 -0.8452 37 1 5.6071 -5.8327 -0.7557 38 1 7.8579 -8.7388 -0.5338 39 1 5.2884 -0.2654 -0.2575 40 1 3.9657 -1.3016 0.3613 41 1 1.4070 -0.3689 -2.1001 42 1 2.0341 -1.7299 -1.1165 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334500607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:27:07 Heat of formation + Delta-G solvation = -37.307348 kcal Electronic energy + Delta-G solvation = -20607.588469 eV Core-core repulsion = 17586.985683 eV Total energy + Delta-G solvation = -3020.602786 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.62877 -38.61738 -36.40983 -33.42559 -32.67889 -30.92161 -30.22389 -28.95345 -27.09704 -25.76167 -24.38092 -22.76864 -21.48230 -21.16385 -19.48855 -18.57029 -16.90553 -16.10421 -15.85679 -15.71349 -15.46841 -14.78557 -14.39697 -14.37332 -14.07212 -13.85392 -13.49075 -12.80455 -12.68809 -12.37602 -12.33941 -12.19717 -12.01667 -11.81001 -11.64920 -11.49626 -11.14985 -10.98278 -10.92399 -10.72894 -10.71694 -10.54373 -9.90763 -9.60844 -9.11817 -8.94770 -8.66871 -8.33059 -8.26540 -5.92797 -3.97001 3.31058 3.34652 3.35304 3.41938 3.45323 3.72257 4.22982 4.30185 4.34010 4.50231 4.71304 4.83284 5.00686 5.08036 5.12537 5.16368 5.31832 5.39339 5.42046 5.44652 5.53407 5.56344 5.62019 5.65790 5.70824 5.77006 5.83404 5.91904 6.00303 6.08868 6.28391 6.30103 6.58162 6.63700 6.75915 6.94796 7.78598 7.91058 7.94163 8.11450 8.42502 8.82695 9.11876 9.66258 11.18246 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036564 B = 0.003609 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.591364 B = 7755.677900 C = 7893.264941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.523 5.523 3 C 0.035 3.965 4 C -0.116 4.116 5 C -0.077 4.077 6 C -0.119 4.119 7 C 0.104 3.896 8 N -0.631 5.631 9 C 0.525 3.475 10 O -0.532 6.532 11 C -0.124 4.124 12 C 0.036 3.964 13 C -0.525 4.525 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.889 5.889 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.126 3.874 22 C 0.051 3.949 23 H 0.026 0.974 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.023 0.977 37 H 0.024 0.976 38 H 0.260 0.740 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.048 0.952 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.392 21.413 -4.070 25.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.247 5.247 3 C -0.093 4.093 4 C -0.154 4.154 5 C -0.079 4.079 6 C -0.157 4.157 7 C -0.020 4.020 8 N -0.369 5.369 9 C 0.316 3.684 10 O -0.407 6.407 11 C -0.163 4.163 12 C -0.002 4.002 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C 0.003 3.997 22 C -0.076 4.076 23 H 0.044 0.956 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.042 20.755 -2.799 24.159 hybrid contribution -0.082 -0.234 -1.453 1.474 sum -12.125 20.521 -4.252 24.212 Atomic orbital electron populations 1.22508 0.87780 1.02347 1.00516 1.64768 1.08094 1.14651 1.37154 1.22978 0.95670 0.89863 1.00746 1.22211 0.98261 0.95278 0.99643 1.21461 0.95301 0.95360 0.95731 1.22502 1.00589 0.96899 0.95690 1.21998 1.00380 0.95239 0.84350 1.48851 1.64464 1.16641 1.06927 1.21298 0.75524 0.80529 0.91027 1.90680 1.53290 1.77259 1.19496 1.21838 1.01439 0.96206 0.96861 1.18918 0.96659 0.89151 0.95436 1.21257 1.41467 1.00622 0.93014 0.92586 1.25033 0.95875 0.98317 0.95207 1.70013 1.44364 1.23706 1.14728 0.86539 0.78146 0.81500 0.81794 1.19764 1.21034 1.21033 1.21879 0.95566 0.88337 0.93913 1.23034 0.93175 1.00469 0.90919 0.95558 0.91134 0.91340 0.90197 0.93791 0.90841 0.90285 0.90101 0.90211 0.91395 0.91298 0.90437 0.90424 0.95826 0.95806 0.93026 0.92038 0.89753 0.93371 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.39 60.06 0.56 0.71 16 2 N -0.52 -5.41 5.55 -239.14 -1.33 -6.74 16 3 C 0.04 0.30 6.74 -2.47 -0.02 0.28 16 4 C -0.12 -0.91 6.15 -26.05 -0.16 -1.07 16 5 C -0.08 -0.76 0.69 -154.07 -0.11 -0.87 16 6 C -0.12 -1.00 5.86 -25.64 -0.15 -1.15 16 7 C 0.10 1.18 6.46 -2.82 -0.02 1.17 16 8 N -0.63 -9.89 3.34 -171.00 -0.57 -10.46 16 9 C 0.53 10.89 7.85 -10.99 -0.09 10.81 16 10 O -0.53 -13.39 16.26 5.55 0.09 -13.30 16 11 C -0.12 -2.64 4.83 -27.89 -0.13 -2.77 16 12 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 13 C -0.53 -15.17 9.11 -34.44 -0.31 -15.49 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.84 13.29 55.43 0.74 -27.10 16 17 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 C 0.13 1.71 5.82 -3.24 -0.02 1.70 16 22 C 0.05 0.53 5.47 -2.60 -0.01 0.52 16 23 H 0.03 0.20 8.01 -51.93 -0.42 -0.22 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.32 7.73 -51.93 -0.40 -0.08 16 28 H 0.07 0.47 7.91 -51.93 -0.41 0.06 16 29 H 0.08 0.61 7.63 -51.93 -0.40 0.22 16 30 H 0.08 0.55 7.81 -51.93 -0.41 0.15 16 31 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.06 0.81 7.79 -51.93 -0.40 0.41 16 40 H 0.08 1.35 7.95 -51.93 -0.41 0.94 16 41 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 42 H 0.09 1.10 8.01 -51.93 -0.42 0.68 16 LS Contribution 335.20 15.07 5.05 5.05 Total: -1.00 -34.63 335.20 -9.14 -43.76 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -7.42 Total: -4.39 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -0.67 Total: -3.71 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: -1.16 Total: -44.31 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.30 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.63 -9.14 -43.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334500607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.456 kcal (2) G-P(sol) polarization free energy of solvation -34.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds