Wall clock time and date at job start Mon Mar 30 2020 19:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21280 * 119.99962 * 2 1 4 4 N 1.34776 * 120.00347 * 179.97438 * 2 1 3 5 5 C 1.46921 * 120.63113 * 6.14933 * 4 2 1 6 6 C 1.53191 * 108.89668 * 126.45482 * 5 4 2 7 7 C 1.53041 * 109.31041 * 54.56770 * 6 5 4 8 8 C 1.53042 * 109.53640 * 298.63257 * 7 6 5 9 9 C 1.46963 * 120.65575 * 185.95778 * 4 2 1 10 10 H 1.09005 * 109.46534 * 113.75751 * 9 4 2 11 11 C 1.53009 * 109.71024 * 353.47091 * 9 4 2 12 12 H 1.09000 * 109.86776 * 46.44584 * 11 9 4 13 13 C 1.54318 * 109.87827 * 167.45941 * 11 9 4 14 14 C 1.55153 * 102.94249 * 141.61333 * 13 11 9 15 15 C 1.54910 * 101.58137 * 324.49567 * 14 13 11 16 16 N 1.47013 * 109.88302 * 285.26619 * 11 9 4 17 17 C 1.36941 * 125.64840 * 61.60024 * 16 11 9 18 18 H 1.08002 * 119.99783 * 308.94524 * 17 16 11 19 19 C 1.38812 * 120.00296 * 128.94496 * 17 16 11 20 20 N 1.31616 * 120.00269 * 184.27189 * 19 17 16 21 21 Si 1.86798 * 119.99938 * 4.27205 * 19 17 16 22 22 H 1.48503 * 109.47092 * 84.88389 * 21 19 17 23 23 H 1.48497 * 109.47274 * 204.88503 * 21 19 17 24 24 H 1.48505 * 109.46977 * 324.88619 * 21 19 17 25 25 H 1.09009 * 109.46803 * 185.19765 * 1 2 3 26 26 H 1.08990 * 109.47624 * 305.20026 * 1 2 3 27 27 H 1.09001 * 109.46966 * 65.20578 * 1 2 3 28 28 H 1.08997 * 109.58599 * 6.59898 * 5 4 2 29 29 H 1.08998 * 109.58589 * 246.31713 * 5 4 2 30 30 H 1.08999 * 109.50180 * 174.51606 * 6 5 4 31 31 H 1.08996 * 109.50054 * 294.58017 * 6 5 4 32 32 H 1.08998 * 109.46360 * 58.65551 * 7 6 5 33 33 H 1.09003 * 109.46260 * 178.63258 * 7 6 5 34 34 H 1.09001 * 109.49902 * 181.31810 * 8 7 6 35 35 H 1.09007 * 109.49858 * 301.38219 * 8 7 6 36 36 H 1.09009 * 110.72341 * 259.97193 * 13 11 9 37 37 H 1.09005 * 110.72444 * 23.24794 * 13 11 9 38 38 H 1.09001 * 111.00557 * 82.57008 * 14 13 11 39 39 H 1.08996 * 111.00922 * 206.38606 * 14 13 11 40 40 H 1.09000 * 110.36894 * 155.84387 * 15 14 13 41 41 H 1.09002 * 110.36850 * 278.17193 * 15 14 13 42 42 H 0.97001 * 120.00256 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4667 -2.4440 -0.1343 6 6 2.0821 -3.2368 -1.2917 7 6 3.5883 -3.3806 -1.0623 8 6 4.2355 -1.9941 -1.0286 9 6 3.6445 -1.1872 0.1318 10 1 3.9180 -1.6541 1.0781 11 6 4.1861 0.2432 0.0900 12 1 3.5939 0.8827 0.7446 13 6 5.6630 0.2584 0.5372 14 6 6.3022 1.3074 -0.4105 15 6 5.5168 1.0605 -1.7227 16 7 4.1418 0.7546 -1.2876 17 6 3.0108 0.9187 -2.0421 18 1 2.3094 0.1043 -2.1478 19 6 2.7659 2.1317 -2.6709 20 7 1.6397 2.3178 -3.3261 21 14 4.0346 3.5002 -2.5871 22 1 5.0427 3.3069 -3.6603 23 1 3.3616 4.8111 -2.7704 24 1 4.7083 3.4702 -1.2639 25 1 -0.3633 -1.0235 0.0931 26 1 -0.3634 0.5923 0.8396 27 1 -0.3633 0.4310 -0.9329 28 1 0.4136 -2.2536 -0.3411 29 1 1.5603 -3.0144 0.7898 30 1 1.6253 -4.2254 -1.3390 31 1 1.9050 -2.7091 -2.2289 32 1 3.7645 -3.8867 -0.1132 33 1 4.0249 -3.9652 -1.8721 34 1 5.3115 -2.0982 -0.8886 35 1 4.0392 -1.4780 -1.9685 36 1 5.7480 0.5754 1.5767 37 1 6.1198 -0.7207 0.3929 38 1 6.1374 2.3196 -0.0411 39 1 7.3657 1.1126 -0.5486 40 1 5.5274 1.9552 -2.3453 41 1 5.9401 0.2150 -2.2649 42 1 1.4687 3.1653 -3.7658 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025178708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:03 Heat of formation + Delta-G solvation = 38.171859 kcal Electronic energy + Delta-G solvation = -23142.036032 eV Core-core repulsion = 20124.706270 eV Total energy + Delta-G solvation = -3017.329762 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.00678 -37.02152 -36.39414 -32.34385 -32.22512 -31.34430 -29.68620 -28.57511 -27.25686 -24.39337 -23.86578 -22.44790 -20.49316 -20.43007 -19.38160 -17.95208 -16.86684 -16.07504 -15.40898 -15.11969 -14.56109 -14.32341 -14.01062 -13.61040 -13.18579 -12.97236 -12.69646 -12.55240 -12.47649 -12.28216 -11.96440 -11.57990 -11.26432 -10.99499 -10.95264 -10.88253 -10.83849 -10.48257 -10.37340 -10.32227 -10.10099 -10.08487 -9.73570 -9.55283 -9.34017 -8.20977 -7.83449 -7.49250 -6.15504 -5.68694 -3.21652 3.47320 3.59661 3.68034 3.77627 3.97543 4.76162 5.13194 5.22250 5.25802 5.30332 5.46115 5.57269 5.68273 5.70216 5.70690 5.76798 5.80590 5.85673 5.98469 6.02834 6.10267 6.16978 6.25404 6.27144 6.34525 6.41781 6.48339 6.53525 6.57287 6.58543 6.64477 6.69890 6.81745 7.03639 7.16210 7.31053 7.67915 8.40446 8.46779 8.63423 9.13593 9.47580 9.93192 10.62060 11.41489 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018684 B = 0.011013 C = 0.008644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.211895 B = 2541.740197 C = 3238.460479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.483 3.517 3 O -0.451 6.451 4 N -0.612 5.612 5 C 0.112 3.888 6 C -0.134 4.134 7 C -0.116 4.116 8 C -0.126 4.126 9 C 0.148 3.852 10 H 0.048 0.952 11 C 0.142 3.858 12 H 0.095 0.905 13 C -0.134 4.134 14 C -0.134 4.134 15 C 0.117 3.883 16 N -0.590 5.590 17 C -0.190 4.190 18 H 0.072 0.928 19 C 0.035 3.965 20 N -0.916 5.916 21 Si 0.902 3.098 22 H -0.295 1.295 23 H -0.312 1.312 24 H -0.267 1.267 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.033 0.967 41 H 0.021 0.979 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.183 -10.530 7.740 13.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.272 3.728 3 O -0.323 6.323 4 N -0.350 5.350 5 C -0.012 4.012 6 C -0.172 4.172 7 C -0.153 4.153 8 C -0.165 4.165 9 C 0.043 3.957 10 H 0.066 0.934 11 C 0.036 3.964 12 H 0.112 0.888 13 C -0.172 4.172 14 C -0.172 4.172 15 C -0.007 4.007 16 N -0.316 5.316 17 C -0.318 4.318 18 H 0.090 0.910 19 C -0.164 4.164 20 N -0.559 5.559 21 Si 0.735 3.265 22 H -0.223 1.223 23 H -0.240 1.240 24 H -0.192 1.192 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.039 0.961 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.304 -9.766 7.598 12.587 hybrid contribution 0.639 0.599 -0.315 0.931 sum 2.944 -9.167 7.284 12.073 Atomic orbital electron populations 1.21947 0.94368 1.02168 1.04502 1.20125 0.89374 0.83570 0.79752 1.90763 1.67371 1.31417 1.42710 1.47789 1.06357 1.05176 1.75652 1.21586 0.96779 0.85512 0.97273 1.21886 0.96202 0.99383 0.99734 1.21499 0.95459 0.97919 1.00455 1.21929 0.98216 0.94295 1.02012 1.21694 0.79531 0.98947 0.95541 0.93408 1.21934 0.91839 0.91603 0.91026 0.88792 1.22725 0.97911 0.98369 0.98213 1.22734 0.97882 0.99126 0.97446 1.21874 0.87729 0.97106 0.94008 1.44427 1.00603 1.77392 1.09180 1.18161 0.97089 0.95321 1.21280 0.91044 1.25569 0.95323 0.96700 0.98820 1.69760 1.23458 1.25030 1.37613 0.86568 0.80776 0.81027 0.78091 1.22328 1.24047 1.19192 0.91833 0.90629 0.89013 0.89990 0.93017 0.92073 0.91159 0.93067 0.92795 0.92652 0.89013 0.92396 0.92321 0.91869 0.92468 0.94897 0.96086 0.93307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 10.01 36.00 0.36 -2.57 16 2 C 0.48 10.08 5.63 -10.99 -0.06 10.02 16 3 O -0.45 -11.39 9.76 5.56 0.05 -11.34 16 4 N -0.61 -11.08 2.60 -165.19 -0.43 -11.51 16 5 C 0.11 1.59 6.24 -3.71 -0.02 1.56 16 6 C -0.13 -1.86 6.08 -26.61 -0.16 -2.02 16 7 C -0.12 -1.63 5.88 -26.69 -0.16 -1.78 16 8 C -0.13 -2.17 4.94 -26.61 -0.13 -2.30 16 9 C 0.15 2.68 2.52 -67.57 -0.17 2.51 16 10 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 11 C 0.14 2.96 2.31 -66.96 -0.15 2.81 16 12 H 0.10 2.25 5.36 -54.95 -0.29 1.95 16 13 C -0.13 -2.34 6.32 -24.90 -0.16 -2.49 16 14 C -0.13 -2.52 7.00 -24.58 -0.17 -2.69 16 15 C 0.12 2.63 6.02 -2.53 -0.02 2.61 16 16 N -0.59 -14.26 1.34 -162.57 -0.22 -14.48 16 17 C -0.19 -5.28 5.76 -15.06 -0.09 -5.37 16 18 H 0.07 2.13 6.30 -52.49 -0.33 1.80 16 19 C 0.04 1.05 5.47 -17.43 -0.10 0.96 16 20 N -0.92 -28.57 13.97 55.49 0.78 -27.79 16 21 Si 0.90 24.41 24.80 -169.99 -4.22 20.20 16 22 H -0.29 -7.83 6.96 56.52 0.39 -7.44 16 23 H -0.31 -8.65 7.11 56.52 0.40 -8.24 16 24 H -0.27 -7.11 5.98 56.52 0.34 -6.77 16 25 H 0.06 0.87 5.32 -51.92 -0.28 0.59 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 28 H 0.08 1.07 5.27 -51.93 -0.27 0.79 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.90 7.03 -51.93 -0.36 0.53 16 35 H 0.09 1.95 6.44 -51.92 -0.33 1.62 16 36 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 37 H 0.06 0.92 6.70 -51.93 -0.35 0.58 16 38 H 0.06 1.27 7.46 -51.93 -0.39 0.88 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.03 0.81 3.46 -51.93 -0.18 0.63 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 297.85 15.07 4.49 4.49 Total: -1.00 -32.37 297.85 -7.21 -39.58 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.64 Total: -0.40 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -1.03 Total: 1.25 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.13 Total: -53.78 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.05 Total: -11.34 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -4.22 Total: 20.20 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.37 -7.21 -39.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025178708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.756 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds