Wall clock time and date at job start Mon Mar 30 2020 19:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21280 * 119.99962 * 2 1 4 4 N 1.34776 * 120.00347 * 179.97438 * 2 1 3 5 5 C 1.46921 * 120.63113 * 6.14933 * 4 2 1 6 6 C 1.53191 * 108.89668 * 126.45482 * 5 4 2 7 7 C 1.53041 * 109.31041 * 54.56770 * 6 5 4 8 8 C 1.53042 * 109.53640 * 298.63257 * 7 6 5 9 9 C 1.46963 * 120.65575 * 185.95778 * 4 2 1 10 10 H 1.09005 * 109.46534 * 113.75751 * 9 4 2 11 11 C 1.53009 * 109.71024 * 353.47091 * 9 4 2 12 12 H 1.09000 * 109.86776 * 46.44584 * 11 9 4 13 13 C 1.54318 * 109.87827 * 167.45941 * 11 9 4 14 14 C 1.55153 * 102.94249 * 141.61333 * 13 11 9 15 15 C 1.54910 * 101.58137 * 324.49567 * 14 13 11 16 16 N 1.47013 * 109.88302 * 285.26619 * 11 9 4 17 17 C 1.36941 * 125.64840 * 61.60024 * 16 11 9 18 18 H 1.08002 * 119.99783 * 308.94524 * 17 16 11 19 19 C 1.38812 * 120.00296 * 128.94496 * 17 16 11 20 20 N 1.31616 * 120.00269 * 184.27189 * 19 17 16 21 21 Si 1.86798 * 119.99938 * 4.27205 * 19 17 16 22 22 H 1.48503 * 109.47092 * 84.88389 * 21 19 17 23 23 H 1.48497 * 109.47274 * 204.88503 * 21 19 17 24 24 H 1.48505 * 109.46977 * 324.88619 * 21 19 17 25 25 H 1.09009 * 109.46803 * 185.19765 * 1 2 3 26 26 H 1.08990 * 109.47624 * 305.20026 * 1 2 3 27 27 H 1.09001 * 109.46966 * 65.20578 * 1 2 3 28 28 H 1.08997 * 109.58599 * 6.59898 * 5 4 2 29 29 H 1.08998 * 109.58589 * 246.31713 * 5 4 2 30 30 H 1.08999 * 109.50180 * 174.51606 * 6 5 4 31 31 H 1.08996 * 109.50054 * 294.58017 * 6 5 4 32 32 H 1.08998 * 109.46360 * 58.65551 * 7 6 5 33 33 H 1.09003 * 109.46260 * 178.63258 * 7 6 5 34 34 H 1.09001 * 109.49902 * 181.31810 * 8 7 6 35 35 H 1.09007 * 109.49858 * 301.38219 * 8 7 6 36 36 H 1.09009 * 110.72341 * 259.97193 * 13 11 9 37 37 H 1.09005 * 110.72444 * 23.24794 * 13 11 9 38 38 H 1.09001 * 111.00557 * 82.57008 * 14 13 11 39 39 H 1.08996 * 111.00922 * 206.38606 * 14 13 11 40 40 H 1.09000 * 110.36894 * 155.84387 * 15 14 13 41 41 H 1.09002 * 110.36850 * 278.17193 * 15 14 13 42 42 H 0.97001 * 120.00256 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4667 -2.4440 -0.1343 6 6 2.0821 -3.2368 -1.2917 7 6 3.5883 -3.3806 -1.0623 8 6 4.2355 -1.9941 -1.0286 9 6 3.6445 -1.1872 0.1318 10 1 3.9180 -1.6541 1.0781 11 6 4.1861 0.2432 0.0900 12 1 3.5939 0.8827 0.7446 13 6 5.6630 0.2584 0.5372 14 6 6.3022 1.3074 -0.4105 15 6 5.5168 1.0605 -1.7227 16 7 4.1418 0.7546 -1.2876 17 6 3.0108 0.9187 -2.0421 18 1 2.3094 0.1043 -2.1478 19 6 2.7659 2.1317 -2.6709 20 7 1.6397 2.3178 -3.3261 21 14 4.0346 3.5002 -2.5871 22 1 5.0427 3.3069 -3.6603 23 1 3.3616 4.8111 -2.7704 24 1 4.7083 3.4702 -1.2639 25 1 -0.3633 -1.0235 0.0931 26 1 -0.3634 0.5923 0.8396 27 1 -0.3633 0.4310 -0.9329 28 1 0.4136 -2.2536 -0.3411 29 1 1.5603 -3.0144 0.7898 30 1 1.6253 -4.2254 -1.3390 31 1 1.9050 -2.7091 -2.2289 32 1 3.7645 -3.8867 -0.1132 33 1 4.0249 -3.9652 -1.8721 34 1 5.3115 -2.0982 -0.8886 35 1 4.0392 -1.4780 -1.9685 36 1 5.7480 0.5754 1.5767 37 1 6.1198 -0.7207 0.3929 38 1 6.1374 2.3196 -0.0411 39 1 7.3657 1.1126 -0.5486 40 1 5.5274 1.9552 -2.3453 41 1 5.9401 0.2150 -2.2649 42 1 1.4687 3.1653 -3.7658 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025178708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:02 Heat of formation + Delta-G solvation = 16.654969 kcal Electronic energy + Delta-G solvation = -23142.969074 eV Core-core repulsion = 20124.706270 eV Total energy + Delta-G solvation = -3018.262804 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.54853 -38.67908 -37.84108 -34.41814 -33.64824 -32.75573 -31.59086 -29.99280 -28.77362 -26.15643 -25.39468 -23.90241 -22.16671 -21.76436 -20.99306 -19.44136 -18.81596 -17.88438 -17.00501 -16.57817 -16.30520 -15.93141 -15.25929 -15.07447 -14.73427 -14.63585 -14.43239 -14.20249 -14.00392 -13.88373 -13.47767 -13.15944 -12.88411 -12.80335 -12.57758 -12.48392 -12.28817 -12.23016 -11.87249 -11.80765 -11.58017 -11.48221 -11.35376 -11.25058 -11.12718 -10.40403 -9.46907 -9.02932 -8.17848 -7.85300 -5.41141 1.27164 1.36911 1.48588 2.18664 2.52756 2.56558 3.32755 3.61458 3.88921 3.99566 4.07413 4.15995 4.22748 4.25096 4.26269 4.43937 4.49426 4.56573 4.59466 4.69893 4.73668 4.83686 4.85955 4.95751 5.01769 5.06081 5.08990 5.14918 5.19327 5.23571 5.26805 5.34519 5.41572 5.44131 5.69846 5.81874 6.14572 6.26204 6.41529 6.96871 7.17915 7.76859 7.88913 8.52675 9.21125 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018684 B = 0.011013 C = 0.008644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.211895 B = 2541.740197 C = 3238.460479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.477 3.523 3 O -0.511 6.511 4 N -0.613 5.613 5 C 0.105 3.895 6 C -0.131 4.131 7 C -0.110 4.110 8 C -0.119 4.119 9 C 0.146 3.854 10 H 0.080 0.920 11 C 0.134 3.866 12 H 0.063 0.937 13 C -0.121 4.121 14 C -0.126 4.126 15 C 0.108 3.892 16 N -0.604 5.604 17 C -0.143 4.143 18 H 0.045 0.955 19 C -0.032 4.032 20 N -0.964 5.964 21 Si 0.951 3.049 22 H -0.291 1.291 23 H -0.327 1.327 24 H -0.263 1.263 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.031 0.969 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.095 0.905 40 H 0.008 0.992 41 H 0.033 0.967 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.794 -13.746 10.086 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.266 3.734 3 O -0.386 6.386 4 N -0.349 5.349 5 C -0.017 4.017 6 C -0.169 4.169 7 C -0.148 4.148 8 C -0.158 4.158 9 C 0.041 3.959 10 H 0.098 0.902 11 C 0.029 3.971 12 H 0.080 0.920 13 C -0.159 4.159 14 C -0.164 4.164 15 C -0.016 4.016 16 N -0.330 5.330 17 C -0.273 4.273 18 H 0.062 0.938 19 C -0.225 4.225 20 N -0.612 5.612 21 Si 0.785 3.215 22 H -0.219 1.219 23 H -0.257 1.257 24 H -0.189 1.189 25 H 0.122 0.878 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.050 0.950 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.113 0.887 40 H 0.026 0.974 41 H 0.051 0.949 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.953 -13.051 9.972 16.893 hybrid contribution 0.139 1.409 -0.941 1.700 sum 4.092 -11.642 9.031 15.292 Atomic orbital electron populations 1.21895 0.92133 1.04791 1.03479 1.20812 0.90831 0.83740 0.78014 1.90762 1.68709 1.33335 1.45844 1.47969 1.06862 1.05985 1.74046 1.21917 0.96861 0.83851 0.99055 1.21872 0.96745 1.00631 0.97673 1.21478 0.94946 0.95991 1.02357 1.21803 0.99398 0.95598 0.98967 1.21706 0.79519 0.97305 0.97358 0.90227 1.21951 0.94244 0.92665 0.88223 0.91994 1.22694 0.94965 0.99388 0.98879 1.22700 0.99631 0.98782 0.95317 1.21998 0.87305 0.96348 0.95927 1.44546 1.00390 1.77471 1.10628 1.17932 0.96819 0.93660 1.18872 0.93752 1.26108 0.96859 0.98780 1.00773 1.69879 1.25431 1.25131 1.40761 0.85757 0.79031 0.78561 0.78109 1.21867 1.25744 1.18862 0.87825 0.89258 0.91938 0.89123 0.89383 0.88507 0.95002 0.90149 0.91942 0.91219 0.93928 0.90283 0.89530 0.93529 0.88664 0.97402 0.94914 0.94206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.60 10.01 71.23 0.71 -4.88 16 2 C 0.48 19.97 5.63 87.66 0.49 20.47 16 3 O -0.51 -26.63 9.76 -3.03 -0.03 -26.66 16 4 N -0.61 -21.07 2.60 -794.95 -2.06 -23.14 16 5 C 0.11 2.59 6.24 86.36 0.54 3.13 16 6 C -0.13 -3.22 6.08 30.67 0.19 -3.03 16 7 C -0.11 -2.64 5.88 30.62 0.18 -2.46 16 8 C -0.12 -3.77 4.94 30.67 0.15 -3.62 16 9 C 0.15 4.87 2.52 44.97 0.11 4.98 16 10 H 0.08 2.22 8.10 -2.38 -0.02 2.20 16 11 C 0.13 5.44 2.31 45.34 0.10 5.54 16 12 H 0.06 2.98 5.36 -50.25 -0.27 2.71 16 13 C -0.12 -3.79 6.32 31.78 0.20 -3.59 16 14 C -0.13 -4.41 7.00 31.99 0.22 -4.18 16 15 C 0.11 4.77 6.02 86.86 0.52 5.29 16 16 N -0.60 -29.38 1.34 -668.26 -0.89 -30.27 16 17 C -0.14 -8.23 5.76 84.03 0.48 -7.75 16 18 H 0.05 2.79 6.30 -2.91 -0.02 2.77 16 19 C -0.03 -1.99 5.47 84.86 0.46 -1.52 16 20 N -0.96 -63.77 13.97 21.65 0.30 -63.47 16 21 Si 0.95 52.82 24.80 68.60 1.70 54.52 16 22 H -0.29 -15.58 6.96 99.48 0.69 -14.89 16 23 H -0.33 -18.73 7.11 99.48 0.71 -18.03 16 24 H -0.26 -14.20 5.98 99.48 0.60 -13.60 16 25 H 0.10 2.61 5.32 -2.38 -0.01 2.59 16 26 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 27 H 0.06 2.53 8.14 -2.39 -0.02 2.52 16 28 H 0.09 2.06 5.27 -2.39 -0.01 2.04 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.98 7.03 -2.39 -0.02 1.96 16 35 H 0.04 1.78 6.44 -2.38 -0.02 1.77 16 36 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.09 2.26 6.70 -2.38 -0.02 2.24 16 38 H 0.05 1.78 7.46 -2.39 -0.02 1.76 16 39 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.01 0.40 3.46 -2.39 -0.01 0.39 16 41 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.25 16.06 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -76.82 297.85 4.02 -72.80 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.62 Total: 7.84 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 4.38 Total: 8.37 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -2.66 Total: -116.87 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.03 Total: -26.66 kcal Atomic # 14 Polarization: 52.82 SS G_CDS: 1.70 Total: 54.52 kcal Total: -76.82 4.02 -72.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025178708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.460 kcal (2) G-P(sol) polarization free energy of solvation -76.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds