Wall clock time and date at job start Mon Mar 30 2020 19:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.47255 * 2 1 4 4 C 1.47660 * 111.00414 * 69.42630 * 3 2 1 5 5 C 1.54525 * 107.05031 * 123.12534 * 4 3 2 6 6 C 1.54432 * 102.63497 * 22.93370 * 5 4 3 7 7 H 1.09001 * 110.80799 * 80.38795 * 6 5 4 8 8 C 1.48269 * 110.99793 * 189.99990 * 3 2 1 9 9 H 1.08995 * 111.35959 * 91.92137 * 8 3 2 10 10 C 1.53119 * 108.11318 * 329.40373 * 8 3 2 11 11 C 1.52894 * 109.33076 * 182.70302 * 10 8 3 12 12 C 1.50349 * 109.30786 * 52.85535 * 11 10 8 13 13 O 1.21277 * 118.79965 * 158.33581 * 12 11 10 14 14 N 1.33352 * 122.39497 * 338.31650 * 12 11 10 15 15 C 1.46499 * 117.28655 * 179.78260 * 14 12 11 16 16 C 1.53002 * 109.47337 * 89.99611 * 15 14 12 17 17 C 1.50696 * 109.46997 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00319 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99717 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 H 1.08997 * 109.47613 * 300.01000 * 1 2 3 26 26 H 1.09003 * 109.47023 * 60.00313 * 1 2 3 27 27 H 1.08995 * 109.47302 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47613 * 239.99000 * 2 1 3 29 29 H 1.09003 * 109.47023 * 119.99687 * 2 1 3 30 30 H 1.08992 * 109.91980 * 242.47630 * 4 3 2 31 31 H 1.09002 * 109.91314 * 3.77884 * 4 3 2 32 32 H 1.09001 * 110.78326 * 141.27372 * 5 4 3 33 33 H 1.08999 * 110.78233 * 264.52783 * 5 4 3 34 34 H 1.09005 * 109.49170 * 62.75064 * 10 8 3 35 35 H 1.08993 * 109.49987 * 302.66265 * 10 8 3 36 36 H 1.09000 * 109.50205 * 292.90362 * 11 10 8 37 37 H 1.09001 * 109.49982 * 172.80073 * 11 10 8 38 38 H 1.09005 * 109.47136 * 329.99906 * 15 14 12 39 39 H 1.09002 * 109.47352 * 209.99873 * 15 14 12 40 40 H 1.09005 * 109.46767 * 60.00068 * 16 15 14 41 41 H 1.09002 * 109.47113 * 300.00408 * 16 15 14 42 42 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7394 2.0454 1.2906 5 6 3.0926 2.5386 1.8504 6 6 3.9648 2.6453 0.5805 7 1 3.7564 3.5711 0.0443 8 6 3.4820 1.4314 -0.2404 9 1 3.7067 1.5366 -1.3017 10 6 4.0997 0.1535 0.3340 11 6 5.6180 0.2032 0.1610 12 6 6.1424 1.4882 0.7393 13 8 7.3101 1.5506 1.0607 14 7 5.3703 2.5617 0.9115 15 6 5.9964 3.7536 1.4892 16 6 6.5593 4.6286 0.3674 17 6 7.2028 5.8549 0.9616 18 1 7.2099 5.9959 2.0324 19 6 7.7824 6.7969 0.1383 20 7 8.3444 7.8669 0.6570 21 14 7.7694 6.5533 -1.7136 22 1 8.9868 5.8084 -2.1236 23 1 6.5620 5.7812 -2.1029 24 1 7.7488 7.8769 -2.3868 25 1 -0.3634 0.5140 0.8898 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5140 -0.8898 29 1 1.8933 -0.5138 0.8900 30 1 1.0704 2.8920 1.1369 31 1 1.2888 1.3333 1.9820 32 1 2.9820 3.5125 2.3274 33 1 3.5099 1.8129 2.5485 34 1 3.7015 -0.7125 -0.1949 35 1 3.8567 0.0764 1.3937 36 1 5.8652 0.1539 -0.8994 37 1 6.0712 -0.6411 0.6804 38 1 6.8048 3.4526 2.1555 39 1 5.2529 4.3181 2.0519 40 1 5.7509 4.9296 -0.2990 41 1 7.3029 4.0641 -0.1954 42 1 8.7525 8.5294 0.0778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272438621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:34 Heat of formation + Delta-G solvation = -29.089245 kcal Electronic energy + Delta-G solvation = -21429.585432 eV Core-core repulsion = 18409.339010 eV Total energy + Delta-G solvation = -3020.246422 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.10052 -38.71160 -35.59165 -33.97043 -32.98647 -32.31046 -30.07196 -28.91924 -27.78165 -25.34420 -23.76083 -23.32474 -21.72633 -20.95065 -19.79162 -18.13716 -17.14283 -16.63295 -16.29617 -15.89713 -15.32712 -14.84233 -14.33649 -14.22639 -14.08741 -13.66123 -13.55107 -13.03940 -12.80096 -12.62816 -12.53354 -12.17232 -12.04833 -11.68580 -11.62553 -11.49824 -11.38886 -11.24267 -10.93311 -10.87209 -10.75832 -10.32336 -10.00081 -9.80706 -9.35114 -9.11888 -8.53503 -8.51467 -8.20153 -6.02919 -4.01097 2.97696 3.24446 3.34163 3.40492 3.44099 3.78677 4.29801 4.39365 4.47633 4.64766 4.66850 4.85216 4.91210 5.03657 5.07230 5.15100 5.19098 5.24436 5.31527 5.36164 5.51209 5.59035 5.63956 5.67809 5.68700 5.77121 5.83171 5.93115 6.03323 6.06413 6.13282 6.40240 6.64314 6.69451 6.71736 6.84291 7.29099 7.37858 7.78453 7.93040 8.51246 8.57014 9.00570 9.59432 11.10371 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025374 B = 0.005229 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.239967 B = 5353.596717 C = 5685.062654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 N -0.522 5.522 4 C 0.043 3.957 5 C -0.155 4.155 6 C 0.143 3.857 7 H 0.100 0.900 8 C 0.065 3.935 9 H 0.104 0.896 10 C -0.146 4.146 11 C -0.134 4.134 12 C 0.509 3.491 13 O -0.545 6.545 14 N -0.592 5.592 15 C 0.117 3.883 16 C -0.021 4.021 17 C -0.518 4.518 18 H 0.073 0.927 19 C 0.069 3.931 20 N -0.902 5.902 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.267 1.267 24 H -0.288 1.288 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.014 0.986 41 H 0.016 0.984 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.687 -17.352 -1.334 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 N -0.246 5.246 4 C -0.085 4.085 5 C -0.195 4.195 6 C 0.037 3.963 7 H 0.118 0.882 8 C -0.043 4.043 9 H 0.122 0.878 10 C -0.185 4.185 11 C -0.174 4.174 12 C 0.297 3.703 13 O -0.423 6.423 14 N -0.323 5.323 15 C -0.004 4.004 16 C -0.059 4.059 17 C -0.556 4.556 18 H 0.091 0.909 19 C -0.132 4.132 20 N -0.541 5.541 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.192 1.192 24 H -0.214 1.214 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.033 0.967 41 H 0.035 0.965 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.279 -16.921 -1.619 23.536 hybrid contribution 0.424 -0.394 -0.357 0.680 sum -15.855 -17.315 -1.976 23.560 Atomic orbital electron populations 1.21798 0.94897 1.01347 1.02583 1.22287 0.95903 0.89285 1.00894 1.63879 1.12673 1.16316 1.31749 1.22902 0.97043 0.99147 0.89379 1.23182 0.95353 1.02856 0.98094 1.21497 0.80609 0.99277 0.94931 0.88184 1.22901 0.87067 0.93823 1.00507 0.87774 1.22285 0.95164 0.99001 1.02052 1.21614 0.95958 0.96504 1.03343 1.20019 0.86249 0.84974 0.79053 1.90746 1.16764 1.84001 1.50739 1.47138 1.08936 1.14092 1.62133 1.21721 0.97428 0.83706 0.97514 1.19824 0.96060 0.95228 0.94784 1.20970 1.36268 1.02958 0.95453 0.90889 1.24970 0.94624 0.94910 0.98682 1.69910 1.38134 1.10617 1.35465 0.86768 0.79080 0.77305 0.86060 1.20260 1.19161 1.21372 0.92747 0.91833 0.92458 0.90680 0.94306 0.89959 0.92414 0.89746 0.91032 0.90261 0.91234 0.88475 0.88465 0.90061 0.91344 0.96733 0.96518 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.94 37.16 0.37 -0.67 16 2 C 0.04 0.35 4.06 -3.83 -0.02 0.34 16 3 N -0.52 -5.16 5.16 -223.05 -1.15 -6.31 16 4 C 0.04 0.41 6.17 -2.61 -0.02 0.39 16 5 C -0.16 -1.75 5.80 -25.18 -0.15 -1.89 16 6 C 0.14 1.93 3.12 -67.50 -0.21 1.72 16 7 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 8 C 0.07 0.72 3.51 -66.22 -0.23 0.49 16 9 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 10 C -0.15 -1.44 3.87 -26.72 -0.10 -1.54 16 11 C -0.13 -1.62 6.08 -28.11 -0.17 -1.79 16 12 C 0.51 8.94 7.47 -11.79 -0.09 8.85 16 13 O -0.54 -12.14 16.21 5.56 0.09 -12.05 16 14 N -0.59 -10.10 2.49 -166.38 -0.41 -10.51 16 15 C 0.12 2.44 5.02 -4.04 -0.02 2.42 16 16 C -0.02 -0.51 4.35 -27.88 -0.12 -0.64 16 17 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 18 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 20 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 21 Si 0.88 22.48 27.47 -169.99 -4.67 17.81 16 22 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 25 H 0.05 0.38 7.11 -51.93 -0.37 0.01 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.56 7.30 -51.93 -0.38 0.18 16 29 H 0.04 0.30 6.73 -51.93 -0.35 -0.05 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.48 6.90 -51.93 -0.36 0.12 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.83 7.39 -51.93 -0.38 0.44 16 34 H 0.08 0.62 6.38 -51.93 -0.33 0.29 16 35 H 0.07 0.71 6.53 -51.93 -0.34 0.37 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.85 7.14 -51.93 -0.37 1.48 16 39 H 0.07 1.31 7.79 -51.93 -0.40 0.91 16 40 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 41 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 42 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 320.00 15.07 4.82 4.82 Total: -1.00 -33.48 320.00 -8.75 -42.23 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -7.02 Total: -2.69 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -1.19 Total: -5.79 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.79 Total: -44.34 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.67 Total: 17.81 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.48 -8.75 -42.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272438621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.139 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds