Wall clock time and date at job start Mon Mar 30 2020 19:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46912 * 124.35175 * 2 1 4 4 C 1.53839 * 105.34423 * 163.59946 * 3 2 1 5 5 C 1.53960 * 102.46235 * 24.71399 * 4 3 2 6 6 C 1.34497 * 124.35059 * 180.02562 * 2 1 3 7 7 O 1.21289 * 124.94114 * 0.35863 * 6 2 1 8 8 C 1.52239 * 110.58485 * 266.86327 * 4 3 2 9 9 C 1.53262 * 109.35405 * 293.64824 * 8 4 3 10 10 C 1.53129 * 109.05632 * 303.55652 * 9 8 4 11 11 C 1.53032 * 109.41107 * 58.24781 * 10 9 8 12 12 N 1.45976 * 110.73932 * 142.82809 * 4 3 2 13 13 C 1.46906 * 110.99815 * 299.61156 * 12 4 3 14 14 C 1.53000 * 109.47031 * 175.41283 * 13 12 4 15 15 C 1.50696 * 109.46980 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00092 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99970 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99933 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00001 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47089 * 90.00139 * 19 17 15 21 21 H 1.48497 * 109.47172 * 210.00274 * 19 17 15 22 22 H 1.48506 * 109.47300 * 330.00549 * 19 17 15 23 23 H 1.08992 * 109.47264 * 89.99436 * 1 2 3 24 24 H 1.08997 * 109.47183 * 210.00039 * 1 2 3 25 25 H 1.09003 * 109.46751 * 329.99747 * 1 2 3 26 26 H 1.09001 * 110.27014 * 44.62818 * 3 2 1 27 27 H 1.09004 * 110.35093 * 282.60794 * 3 2 1 28 28 H 1.08995 * 110.50975 * 94.52252 * 5 4 3 29 29 H 1.09000 * 110.50538 * 217.23156 * 5 4 3 30 30 H 1.08999 * 109.48853 * 53.60660 * 8 4 3 31 31 H 1.08996 * 109.49482 * 173.68151 * 8 4 3 32 32 H 1.09002 * 109.53721 * 63.42742 * 9 8 4 33 33 H 1.08992 * 109.53912 * 183.68198 * 9 8 4 34 34 H 1.08998 * 109.48093 * 178.23347 * 10 9 8 35 35 H 1.09002 * 109.48192 * 298.27199 * 10 9 8 36 36 H 1.09000 * 109.47066 * 180.24239 * 11 10 9 37 37 H 1.08998 * 109.47208 * 60.24258 * 11 10 9 38 38 H 1.09008 * 109.46565 * 55.41346 * 13 12 4 39 39 H 1.08997 * 109.47091 * 295.41691 * 13 12 4 40 40 H 1.08997 * 109.47000 * 60.00536 * 14 13 12 41 41 H 1.08994 * 109.46870 * 300.00499 * 14 13 12 42 42 H 0.97000 * 119.99885 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2940 1.2129 0.0000 4 6 3.6987 0.7459 0.4189 5 6 3.6917 -0.7380 0.0084 6 6 2.2240 -1.1104 -0.0005 7 8 1.7951 -2.2449 -0.0072 8 6 3.8818 0.8834 1.9239 9 6 3.8628 2.3679 2.3044 10 6 4.9466 3.1017 1.5096 11 6 4.6950 2.9125 0.0120 12 7 4.7269 1.4795 -0.3129 13 6 4.5973 1.2648 -1.7604 14 6 5.6156 2.1361 -2.4985 15 6 5.4821 1.9163 -3.9833 16 1 4.7445 1.2247 -4.3627 17 6 6.3010 2.5989 -4.8576 18 7 7.1990 3.4415 -4.3957 19 14 6.1361 2.3260 -6.6982 20 1 5.1539 3.2903 -7.2556 21 1 7.4550 2.5308 -7.3491 22 1 5.6681 0.9398 -6.9531 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.9063 1.9353 0.7183 27 1 2.3238 1.6517 -0.9974 28 1 4.1231 -0.8615 -0.9848 29 1 4.2337 -1.3387 0.7388 30 1 3.0716 0.3660 2.4376 31 1 4.8363 0.4454 2.2158 32 1 2.8870 2.7924 2.0680 33 1 4.0588 2.4734 3.3714 34 1 4.9185 4.1641 1.7516 35 1 5.9246 2.6956 1.7679 36 1 5.4685 3.4309 -0.5547 37 1 3.7187 3.3222 -0.2470 38 1 3.5901 1.5340 -2.0788 39 1 4.7826 0.2155 -1.9901 40 1 6.6226 1.8668 -2.1801 41 1 5.4302 3.1853 -2.2687 42 1 7.2854 3.5824 -3.4398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:53 Heat of formation + Delta-G solvation = -31.821997 kcal Electronic energy + Delta-G solvation = -21633.551510 eV Core-core repulsion = 18613.186587 eV Total energy + Delta-G solvation = -3020.364923 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.24925 -38.54512 -35.70598 -34.59975 -33.02836 -32.40079 -29.00807 -28.51769 -27.44076 -25.30698 -24.76012 -23.35971 -21.51647 -20.64254 -19.75612 -18.39525 -17.15322 -16.54044 -16.27001 -15.58916 -15.12772 -14.81404 -14.38259 -14.16408 -13.93683 -13.72718 -13.32715 -13.24449 -12.95598 -12.78888 -12.54072 -12.34776 -12.10834 -11.88964 -11.69052 -11.37574 -11.13315 -10.93033 -10.70889 -10.68922 -10.20008 -10.13577 -10.01301 -9.74675 -9.59764 -8.76594 -8.62468 -8.34903 -7.91057 -6.40016 -4.09431 2.63009 2.99821 3.41561 3.45500 3.61146 3.95340 4.35260 4.51755 4.60970 4.68879 4.78898 4.95883 5.10627 5.13284 5.22919 5.26785 5.36812 5.40071 5.47530 5.57905 5.59141 5.66238 5.72395 5.86776 5.88947 5.92800 5.94848 6.07777 6.13764 6.23466 6.35264 6.42604 6.45705 6.72629 7.04960 7.17988 7.31477 7.51697 7.59017 8.17522 8.18891 8.42136 8.84633 9.62399 11.01033 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018979 B = 0.005864 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.944474 B = 4773.602094 C = 5720.853911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.620 5.620 3 C 0.067 3.933 4 C 0.109 3.891 5 C -0.153 4.153 6 C 0.520 3.480 7 O -0.539 6.539 8 C -0.099 4.099 9 C -0.121 4.121 10 C -0.118 4.118 11 C 0.050 3.950 12 N -0.519 5.519 13 C 0.060 3.940 14 C 0.012 3.988 15 C -0.604 4.604 16 H 0.048 0.952 17 C 0.018 3.982 18 N -0.911 5.911 19 Si 1.070 2.930 20 H -0.288 1.288 21 H -0.284 1.284 22 H -0.289 1.289 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.030 0.970 38 H 0.028 0.972 39 H 0.070 0.930 40 H 0.017 0.983 41 H 0.011 0.989 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.517 -1.506 13.512 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.355 5.355 3 C -0.057 4.057 4 C 0.017 3.983 5 C -0.193 4.193 6 C 0.309 3.691 7 O -0.417 6.417 8 C -0.137 4.137 9 C -0.158 4.158 10 C -0.156 4.156 11 C -0.077 4.077 12 N -0.242 5.242 13 C -0.066 4.066 14 C -0.025 4.025 15 C -0.643 4.643 16 H 0.066 0.934 17 C -0.187 4.187 18 N -0.547 5.547 19 Si 0.898 3.102 20 H -0.215 1.215 21 H -0.209 1.209 22 H -0.215 1.215 23 H 0.073 0.927 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.138 0.862 29 H 0.123 0.877 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.048 0.952 38 H 0.046 0.954 39 H 0.088 0.912 40 H 0.036 0.964 41 H 0.029 0.971 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.752 -1.824 12.181 15.109 hybrid contribution -1.577 -0.020 1.117 1.932 sum -10.328 -1.844 13.297 16.938 Atomic orbital electron populations 1.21520 0.78498 1.02736 1.01857 1.48188 1.06260 1.07430 1.73590 1.23023 0.92239 0.87666 1.02800 1.21298 0.88494 0.93273 0.95242 1.22590 0.94023 0.96366 1.06326 1.21021 0.89371 0.84131 0.74628 1.90693 1.78814 1.21146 1.51031 1.21448 1.02579 0.97050 0.92627 1.21643 0.99183 0.95195 0.99791 1.21620 0.99461 0.99747 0.94731 1.22206 1.01015 0.88624 0.95852 1.61934 1.44377 1.09332 1.08580 1.22402 0.99183 1.01315 0.83716 1.19318 0.94097 0.93978 0.95142 1.22008 1.22317 1.28514 0.91444 0.93408 1.25801 0.93035 0.93517 1.06299 1.70758 1.33329 1.33972 1.16690 0.83531 0.76315 0.75783 0.74557 1.21517 1.20922 1.21465 0.92667 0.90811 0.91272 0.90359 0.90223 0.86202 0.87652 0.91794 0.90356 0.92343 0.91758 0.91720 0.90975 0.88965 0.95177 0.95403 0.91226 0.96433 0.97050 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.03 10.96 59.85 0.66 1.69 16 2 N -0.62 -8.39 3.34 -180.48 -0.60 -8.99 16 3 C 0.07 0.88 5.08 -3.38 -0.02 0.86 16 4 C 0.11 1.46 0.60 -131.55 -0.08 1.38 16 5 C -0.15 -2.21 5.87 -27.03 -0.16 -2.37 16 6 C 0.52 8.23 8.03 -10.75 -0.09 8.14 16 7 O -0.54 -10.22 17.60 5.55 0.10 -10.12 16 8 C -0.10 -1.12 4.76 -26.98 -0.13 -1.24 16 9 C -0.12 -1.23 5.80 -26.53 -0.15 -1.38 16 10 C -0.12 -1.39 6.07 -26.65 -0.16 -1.55 16 11 C 0.05 0.76 4.78 -3.77 -0.02 0.74 16 12 N -0.52 -8.33 4.61 -218.92 -1.01 -9.34 16 13 C 0.06 1.17 4.35 -3.82 -0.02 1.16 16 14 C 0.01 0.29 3.75 -27.88 -0.10 0.18 16 15 C -0.60 -16.76 9.11 -34.44 -0.31 -17.08 16 16 H 0.05 1.32 7.74 -52.49 -0.41 0.91 16 17 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 18 N -0.91 -27.36 13.65 55.43 0.76 -26.60 16 19 Si 1.07 25.12 29.90 -169.99 -5.08 20.03 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.80 7.93 -51.93 -0.41 0.39 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.88 6.20 -51.93 -0.32 0.55 16 27 H 0.08 1.18 5.61 -51.93 -0.29 0.89 16 28 H 0.12 1.90 5.39 -51.93 -0.28 1.62 16 29 H 0.11 1.38 7.88 -51.93 -0.41 0.97 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.57 6.54 -51.93 -0.34 0.23 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.60 5.91 -51.93 -0.31 1.29 16 37 H 0.03 0.44 7.19 -51.93 -0.37 0.07 16 38 H 0.03 0.55 5.86 -51.92 -0.30 0.25 16 39 H 0.07 1.40 5.94 -51.93 -0.31 1.09 16 40 H 0.02 0.46 8.01 -51.93 -0.42 0.04 16 41 H 0.01 0.28 6.08 -51.93 -0.32 -0.03 16 42 H 0.27 8.01 7.22 -40.82 -0.29 7.71 16 LS Contribution 315.55 15.07 4.76 4.76 Total: -1.00 -31.60 315.55 -8.30 -39.90 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.53 Total: -0.56 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -0.68 Total: -9.07 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: -0.86 Total: -44.94 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.10 Total: -10.12 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.08 Total: 20.03 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.60 -8.30 -39.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.082 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds