Wall clock time and date at job start Mon Mar 30 2020 19:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99776 * 2 1 4 4 N 1.46899 * 109.46987 * 125.00039 * 3 2 1 5 5 C 1.46899 * 111.00335 * 288.10862 * 4 3 2 6 6 C 1.50696 * 109.47168 * 160.49709 * 5 4 3 7 7 H 1.07996 * 120.00395 * 357.80242 * 6 5 4 8 8 C 1.37885 * 119.99852 * 177.80785 * 6 5 4 9 9 N 1.31512 * 119.99739 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99912 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47162 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47064 * 119.99546 * 10 8 6 13 13 H 1.48504 * 109.46740 * 239.99319 * 10 8 6 14 14 C 1.46902 * 111.00242 * 164.15382 * 4 3 2 15 15 C 1.52997 * 109.47364 * 293.95794 * 14 4 3 16 16 C 1.52996 * 109.47287 * 179.97438 * 15 14 4 17 17 N 1.46902 * 109.47230 * 180.02562 * 16 15 14 18 18 C 1.46847 * 111.00273 * 169.99880 * 17 16 15 19 19 C 1.53038 * 109.52347 * 185.83738 * 18 17 16 20 20 C 1.53116 * 109.27740 * 300.81646 * 19 18 17 21 21 C 1.53119 * 109.15880 * 57.65703 * 20 19 18 22 22 C 1.46846 * 110.99543 * 294.20619 * 17 16 15 23 23 H 1.08001 * 119.99818 * 0.02562 * 1 2 3 24 24 H 1.07997 * 120.00147 * 180.02562 * 1 2 3 25 25 H 1.08001 * 119.99818 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47436 * 4.99909 * 3 2 1 27 27 H 1.09002 * 109.47254 * 244.99500 * 3 2 1 28 28 H 1.08997 * 109.46956 * 280.50260 * 5 4 3 29 29 H 1.09003 * 109.46804 * 40.49946 * 5 4 3 30 30 H 0.97003 * 119.99654 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.47529 * 173.95465 * 14 4 3 32 32 H 1.09008 * 109.46936 * 53.95533 * 14 4 3 33 33 H 1.09000 * 109.47067 * 59.99388 * 15 14 4 34 34 H 1.09008 * 109.46881 * 299.99773 * 15 14 4 35 35 H 1.09000 * 109.47475 * 59.99751 * 16 15 14 36 36 H 1.09008 * 109.47067 * 299.99771 * 16 15 14 37 37 H 1.09001 * 109.46316 * 65.81902 * 18 17 16 38 38 H 1.09005 * 109.45858 * 305.85152 * 18 17 16 39 39 H 1.09008 * 109.50020 * 180.87716 * 19 18 17 40 40 H 1.08993 * 109.50124 * 60.75963 * 19 18 17 41 41 H 1.09002 * 109.52158 * 177.55710 * 20 19 18 42 42 H 1.09003 * 109.52444 * 297.75233 * 20 19 18 43 43 H 1.09001 * 109.50383 * 62.28407 * 21 20 19 44 44 H 1.09001 * 109.50022 * 182.40328 * 21 20 19 45 45 H 1.08997 * 109.46423 * 294.17212 * 22 17 16 46 46 H 1.08995 * 109.46791 * 54.14980 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2755 1.4866 2.4052 6 6 3.1590 1.0400 3.5414 7 1 4.1429 0.6443 3.3371 8 6 2.7111 1.1365 4.8419 9 7 1.5132 1.6187 5.0907 10 14 3.8065 0.5836 6.2504 11 1 5.0956 0.0841 5.7082 12 1 4.0620 1.7306 7.1584 13 1 3.1323 -0.5039 7.0041 14 6 3.9997 2.3916 0.9661 15 6 4.8928 2.0626 -0.2317 16 6 5.9375 3.1665 -0.4075 17 7 6.7946 2.8509 -1.5580 18 6 7.6520 3.9917 -1.9042 19 6 8.4223 3.6811 -3.1896 20 6 9.2725 2.4253 -2.9785 21 6 8.3612 1.2639 -2.5718 22 6 7.5927 1.6446 -1.3043 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3585 2.1316 0.0895 27 1 2.6213 1.4026 -0.9313 28 1 2.0055 2.5334 2.5446 29 1 1.3717 0.8776 2.3867 30 1 1.1983 1.6869 6.0056 31 1 4.6102 2.4603 1.8665 32 1 3.4974 3.3436 0.7942 33 1 4.2823 1.9938 -1.1321 34 1 5.3951 1.1105 -0.0598 35 1 6.5480 3.2357 0.4928 36 1 5.4348 4.1183 -0.5796 37 1 8.3572 4.1752 -1.0935 38 1 7.0346 4.8771 -2.0557 39 1 9.0702 4.5218 -3.4377 40 1 7.7179 3.5110 -4.0038 41 1 9.7894 2.1754 -3.9050 42 1 10.0031 2.6082 -2.1905 43 1 7.6558 1.0559 -3.3764 44 1 8.9656 0.3776 -2.3786 45 1 8.2982 1.8391 -0.4966 46 1 6.9324 0.8253 -1.0202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428875341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:40 Heat of formation + Delta-G solvation = 10.237042 kcal Electronic energy + Delta-G solvation = -20577.965465 eV Core-core repulsion = 17695.257453 eV Total energy + Delta-G solvation = -2882.708012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.10309 -37.28180 -34.45133 -33.08578 -32.35130 -30.98884 -30.19525 -27.24436 -25.76218 -24.22907 -23.21887 -22.73003 -20.83036 -20.07426 -19.76514 -19.09659 -16.41274 -16.07952 -15.51155 -14.98193 -14.74019 -14.54920 -14.31159 -14.22497 -13.75807 -13.64535 -13.21928 -13.10057 -12.93101 -12.32946 -12.14972 -11.81337 -11.62191 -11.34450 -11.26604 -11.03649 -10.91586 -10.84394 -10.64182 -10.55374 -10.49204 -10.40617 -10.23891 -10.00989 -9.79812 -9.19431 -8.73237 -8.38079 -8.28817 -7.21466 -5.98337 -3.99152 2.84438 3.32236 3.39668 3.44644 3.87328 4.45798 4.67977 4.73020 4.79773 4.97750 5.12789 5.26698 5.33350 5.36844 5.40997 5.48727 5.51238 5.58569 5.65373 5.72501 5.74112 5.76641 5.80626 5.88624 5.92489 5.98241 5.99296 6.12382 6.16714 6.20465 6.24318 6.39766 6.44710 6.66907 6.78434 7.13419 7.14509 7.15433 7.28006 7.33797 7.42007 7.87644 8.17831 8.25961 8.59806 9.09490 9.64694 11.12251 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.016496 B = 0.004284 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.937647 B = 6534.483521 C = 7628.120462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.120 4.120 3 C 0.075 3.925 4 N -0.532 5.532 5 C 0.192 3.808 6 C -0.502 4.502 7 H 0.063 0.937 8 C 0.054 3.946 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.284 1.284 14 C 0.066 3.934 15 C -0.111 4.111 16 C 0.057 3.943 17 N -0.538 5.538 18 C 0.054 3.946 19 C -0.116 4.116 20 C -0.122 4.122 21 C -0.117 4.117 22 C 0.051 3.949 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.108 0.892 26 H 0.026 0.974 27 H 0.072 0.928 28 H -0.008 1.008 29 H 0.032 0.968 30 H 0.259 0.741 31 H 0.080 0.920 32 H 0.018 0.982 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.030 0.970 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.821 2.545 -15.680 19.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.138 4.138 3 C -0.053 4.053 4 N -0.257 5.257 5 C 0.067 3.933 6 C -0.540 4.540 7 H 0.081 0.919 8 C -0.147 4.147 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.063 4.063 15 C -0.149 4.149 16 C -0.071 4.071 17 N -0.263 5.263 18 C -0.074 4.074 19 C -0.154 4.154 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.077 4.077 23 H 0.108 0.892 24 H 0.110 0.890 25 H 0.126 0.874 26 H 0.044 0.956 27 H 0.090 0.910 28 H 0.009 0.991 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.036 0.964 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.049 0.951 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.652 2.053 -15.904 19.251 hybrid contribution 0.516 0.684 1.688 1.893 sum 11.167 2.737 -14.216 18.284 Atomic orbital electron populations 1.23679 0.96038 1.01093 1.03838 1.22868 0.95335 0.98806 0.96816 1.21253 0.94556 0.94043 0.95483 1.62083 1.15014 1.45680 1.02892 1.19755 0.93981 0.95308 0.84253 1.21216 1.01893 1.40796 0.90137 0.91904 1.24991 0.95204 0.95643 0.98873 1.69976 1.17602 1.46444 1.19921 0.86488 0.80755 0.78246 0.82214 1.19701 1.21189 1.21057 1.21911 0.94409 0.92014 0.97972 1.21649 0.96545 0.98110 0.98619 1.22099 0.94780 0.99412 0.90817 1.61932 1.22146 1.03877 1.38330 1.22070 0.95058 0.93633 0.96598 1.21577 0.98398 0.97480 0.97929 1.21584 0.97779 0.95541 1.01024 1.21588 0.98184 0.97497 0.98183 1.22155 0.95722 0.93565 0.96259 0.89221 0.89016 0.87387 0.95603 0.90999 0.99063 0.94982 0.93087 0.90166 0.96409 0.91706 0.91342 0.94763 0.91102 0.95202 0.90949 0.91887 0.91152 0.92071 0.92465 0.91144 0.91747 0.95142 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.45 14.32 29.01 0.42 -3.04 16 2 C -0.12 -2.14 8.75 -36.03 -0.32 -2.45 16 3 C 0.07 1.38 5.28 -4.98 -0.03 1.36 16 4 N -0.53 -11.50 4.37 -237.52 -1.04 -12.53 16 5 C 0.19 5.06 4.59 -4.98 -0.02 5.04 16 6 C -0.50 -14.23 8.55 -34.44 -0.29 -14.53 16 7 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 10 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.07 1.25 4.78 -3.82 -0.02 1.23 16 15 C -0.11 -1.71 5.11 -26.73 -0.14 -1.85 16 16 C 0.06 0.77 4.96 -3.82 -0.02 0.75 16 17 N -0.54 -6.63 4.66 -234.67 -1.09 -7.73 16 18 C 0.05 0.58 5.46 -3.83 -0.02 0.55 16 19 C -0.12 -1.04 6.09 -26.65 -0.16 -1.20 16 20 C -0.12 -1.06 6.00 -26.61 -0.16 -1.22 16 21 C -0.12 -1.14 6.09 -26.65 -0.16 -1.30 16 22 C 0.05 0.59 5.29 -3.83 -0.02 0.57 16 23 H 0.09 1.45 7.84 -52.49 -0.41 1.04 16 24 H 0.09 1.35 8.06 -52.49 -0.42 0.93 16 25 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 26 H 0.03 0.49 7.71 -51.93 -0.40 0.09 16 27 H 0.07 1.18 5.94 -51.93 -0.31 0.87 16 28 H -0.01 -0.24 8.00 -51.93 -0.42 -0.66 16 29 H 0.03 0.91 7.12 -51.93 -0.37 0.54 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.08 1.68 7.43 -51.93 -0.39 1.29 16 32 H 0.02 0.34 8.12 -51.92 -0.42 -0.09 16 33 H 0.06 0.99 6.28 -51.93 -0.33 0.66 16 34 H 0.07 1.10 6.43 -51.92 -0.33 0.77 16 35 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 36 H 0.07 0.92 7.99 -51.92 -0.41 0.51 16 37 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.73 8.02 -51.93 -0.42 0.31 16 39 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 1.03 6.21 -51.93 -0.32 0.71 16 LS Contribution 356.49 15.07 5.37 5.37 Total: -1.00 -29.73 356.49 -10.80 -40.53 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -8.72 Total: -1.54 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -1.04 Total: -14.64 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -1.39 Total: -46.57 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.73 -10.80 -40.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428875341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.772 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds