Wall clock time and date at job start Mon Mar 30 2020 19:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1 6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 C 1.35346 * 126.75136 * 124.70936 * 12 11 10 14 14 N 1.35316 * 106.17696 * 179.85675 * 13 12 11 15 15 C 1.46507 * 125.86959 * 180.11860 * 14 13 12 16 16 C 1.53000 * 109.46723 * 125.32618 * 15 14 13 17 17 C 1.53005 * 109.46995 * 180.02562 * 16 15 14 18 18 C 1.52991 * 109.47194 * 180.02562 * 17 16 15 19 19 C 1.53005 * 109.47194 * 180.02562 * 18 17 16 20 20 N 1.46897 * 109.47074 * 179.97438 * 19 18 17 21 21 N 1.28715 * 108.25962 * 0.41795 * 14 13 12 22 22 N 1.28632 * 110.18138 * 359.73745 * 21 14 13 23 23 H 0.97004 * 119.99097 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 25 25 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 26 26 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 27 27 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 28 28 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 29 29 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 30 30 H 1.08001 * 126.91466 * 0.02562 * 13 12 11 31 31 H 1.08997 * 109.47042 * 245.32414 * 15 14 13 32 32 H 1.08998 * 109.47136 * 5.33076 * 15 14 13 33 33 H 1.09004 * 109.47522 * 299.99898 * 16 15 14 34 34 H 1.09001 * 109.47333 * 60.00022 * 16 15 14 35 35 H 1.09004 * 109.46880 * 300.00263 * 17 16 15 36 36 H 1.09001 * 109.47086 * 59.99842 * 17 16 15 37 37 H 1.09004 * 109.47352 * 299.99888 * 18 17 16 38 38 H 1.09001 * 109.47304 * 59.99889 * 18 17 16 39 39 H 1.08997 * 109.46883 * 299.99779 * 19 18 17 40 40 H 1.09001 * 109.47086 * 59.99756 * 19 18 17 41 41 H 1.00900 * 111.00159 * 56.04556 * 20 19 18 42 42 H 1.00904 * 110.99742 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5515 -2.6367 0.0001 12 6 6.0538 -4.0575 -0.0004 13 6 6.9059 -4.6149 -0.8920 14 7 7.0754 -5.8988 -0.4997 15 6 7.9200 -6.8949 -1.1637 16 6 8.9060 -7.4830 -0.1523 17 6 9.7885 -8.5229 -0.8458 18 6 10.7740 -9.1114 0.1656 19 6 11.6569 -10.1508 -0.5280 20 7 12.6036 -10.7155 0.4430 21 7 6.3621 -6.0962 0.5533 22 7 5.7405 -5.0176 0.8769 23 1 -0.4849 0.8402 0.0004 24 1 3.8751 -0.6798 0.8895 25 1 3.8745 -0.6809 -0.8904 26 1 3.6584 -3.1503 0.8903 27 1 3.6578 -3.1507 -0.8897 28 1 5.9148 -2.1229 -0.8898 29 1 5.9147 -2.1229 0.8901 30 1 7.3614 -4.1314 -1.7436 31 1 7.2943 -7.6913 -1.5665 32 1 8.4717 -6.4206 -1.9753 33 1 9.5317 -6.6866 0.2505 34 1 8.3543 -7.9573 0.6594 35 1 9.1630 -9.3194 -1.2490 36 1 10.3401 -8.0481 -1.6572 37 1 11.3995 -8.3151 0.5692 38 1 10.2220 -9.5862 0.9768 39 1 11.0318 -10.9471 -0.9318 40 1 12.2089 -9.6756 -1.3389 41 1 12.1179 -11.1051 1.2370 42 1 13.1983 -11.4055 0.0090 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254157031.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:27:24 Heat of formation + Delta-G solvation = 60.876135 kcal Electronic energy + Delta-G solvation = -18872.005774 eV Core-core repulsion = 15887.953295 eV Total energy + Delta-G solvation = -2984.052479 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.11437 -37.42566 -35.75429 -34.73593 -33.10711 -32.38039 -30.70042 -29.71196 -27.42333 -25.87121 -23.65640 -22.74130 -21.72629 -21.59521 -20.59261 -19.78874 -17.28579 -16.73362 -16.55890 -16.41357 -15.84235 -15.20972 -14.78849 -14.62510 -14.26050 -14.04516 -13.62317 -13.45245 -13.03622 -12.61211 -12.51011 -12.13299 -11.91114 -11.76743 -11.68719 -11.53645 -11.38128 -11.09952 -10.94111 -10.82891 -10.50726 -9.99116 -9.80974 -9.62336 -9.56621 -9.27718 -9.10650 -8.81740 -8.45433 -5.95693 -3.92841 1.68922 2.31969 2.77193 3.36190 3.43467 3.47938 3.85268 4.12573 4.33472 4.37447 4.45427 4.52637 4.57993 4.73852 4.85510 4.88241 5.03742 5.07026 5.19968 5.23981 5.26322 5.37114 5.38333 5.57428 5.64295 5.74572 5.81036 5.92405 6.06342 6.15157 6.47840 6.54462 6.63721 6.71759 6.80671 6.84418 7.03688 7.45150 7.55723 7.89103 8.64685 8.69327 9.10796 9.66974 11.18064 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.070143 B = 0.002276 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.090134 B =12299.338013 C =12430.420874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.063 3.937 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.517 4.517 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.095 4.095 11 C -0.039 4.039 12 C 0.000 4.000 13 C -0.062 4.062 14 N -0.297 5.297 15 C 0.118 3.882 16 C -0.132 4.132 17 C -0.115 4.115 18 C -0.119 4.119 19 C 0.059 3.941 20 N -0.855 5.855 21 N -0.092 5.092 22 N -0.260 5.260 23 H 0.262 0.738 24 H 0.017 0.983 25 H 0.010 0.990 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.187 0.813 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.027 0.973 40 H 0.071 0.929 41 H 0.341 0.659 42 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.757 -19.011 -4.844 32.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.555 4.555 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.133 4.133 11 C -0.079 4.079 12 C -0.138 4.138 13 C -0.212 4.212 14 N -0.092 5.092 15 C -0.004 4.004 16 C -0.171 4.171 17 C -0.153 4.153 18 C -0.157 4.157 19 C -0.071 4.071 20 N -0.384 5.384 21 N -0.071 5.071 22 N -0.127 5.127 23 H 0.071 0.929 24 H 0.035 0.965 25 H 0.029 0.971 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.204 0.796 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.090 0.910 41 H 0.153 0.847 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 25.462 -19.195 -3.729 32.103 hybrid contribution 0.256 0.636 -1.242 1.419 sum 25.718 -18.558 -4.970 32.102 Atomic orbital electron populations 1.69934 1.06313 1.26718 1.51583 1.25054 0.94738 0.99166 0.94741 0.86758 0.80432 0.83613 0.78359 1.20422 1.21496 1.18916 1.21187 0.89674 0.94440 1.50222 0.91085 1.19599 0.97106 0.92337 0.96158 1.21404 0.90504 0.99672 1.01746 1.20146 0.98477 0.86720 1.02528 1.22332 0.98915 0.98766 0.93802 1.23396 1.06912 0.85747 1.05118 1.47328 1.31816 1.09818 1.20212 1.22085 0.92169 0.90659 0.95450 1.21879 0.97198 0.99393 0.98579 1.21464 0.97341 0.98074 0.98448 1.21562 0.97055 0.98870 0.98221 1.21820 0.93708 0.96687 0.94912 1.58715 1.25444 1.42530 1.11714 1.78236 1.06392 1.20880 1.01565 1.75100 1.18238 0.96106 1.23285 0.92873 0.96500 0.97133 0.91908 0.93060 0.90722 0.90505 0.79604 0.88549 0.87877 0.90913 0.89880 0.91410 0.91359 0.90928 0.91821 0.95515 0.91006 0.84655 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.76 13.96 55.43 0.77 -27.98 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -15.34 9.66 -34.44 -0.33 -15.67 16 8 H 0.07 2.28 7.99 -52.48 -0.42 1.86 16 9 C -0.01 -0.36 4.04 -27.88 -0.11 -0.47 16 10 C -0.10 -2.01 5.13 -26.73 -0.14 -2.15 16 11 C -0.04 -0.66 5.79 -27.89 -0.16 -0.82 16 12 C 0.00 -0.01 6.50 -82.78 -0.54 -0.54 16 13 C -0.06 -0.77 11.49 -17.05 -0.20 -0.97 16 14 N -0.30 -3.59 3.44 -61.26 -0.21 -3.80 16 15 C 0.12 0.81 6.46 -4.04 -0.03 0.78 16 16 C -0.13 -0.85 5.34 -26.73 -0.14 -0.99 16 17 C -0.11 -0.50 5.21 -26.73 -0.14 -0.64 16 18 C -0.12 -0.62 5.47 -26.73 -0.15 -0.76 16 19 C 0.06 0.29 6.79 -3.82 -0.03 0.26 16 20 N -0.85 -4.31 9.62 -10.37 -0.10 -4.41 16 21 N -0.09 -1.47 12.91 60.35 0.78 -0.69 16 22 N -0.26 -4.82 12.40 33.29 0.41 -4.40 16 23 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 24 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 25 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 26 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.19 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.10 0.42 8.07 -51.93 -0.42 0.01 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 35 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.03 0.12 8.14 -51.93 -0.42 -0.31 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.34 1.42 8.99 -39.29 -0.35 1.07 16 42 H 0.34 1.21 9.08 -39.29 -0.36 0.85 16 LS Contribution 348.99 15.07 5.26 5.26 Total: -1.00 -35.61 348.99 -7.21 -42.82 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -7.40 Total: -4.12 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -2.06 Total: -20.17 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 1.66 Total: -41.29 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.61 -7.21 -42.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254157031.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.695 kcal (2) G-P(sol) polarization free energy of solvation -35.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds