Wall clock time and date at job start Mon Mar 30 2020 19:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1 6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 C 1.35346 * 126.75136 * 124.70936 * 12 11 10 14 14 N 1.35316 * 106.17696 * 179.85675 * 13 12 11 15 15 C 1.46507 * 125.86959 * 180.11860 * 14 13 12 16 16 C 1.53000 * 109.46723 * 125.32618 * 15 14 13 17 17 C 1.53005 * 109.46995 * 180.02562 * 16 15 14 18 18 C 1.52991 * 109.47194 * 180.02562 * 17 16 15 19 19 C 1.53005 * 109.47194 * 180.02562 * 18 17 16 20 20 N 1.46897 * 109.47074 * 179.97438 * 19 18 17 21 21 N 1.28715 * 108.25962 * 0.41795 * 14 13 12 22 22 N 1.28632 * 110.18138 * 359.73745 * 21 14 13 23 23 H 0.97004 * 119.99097 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 25 25 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 26 26 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 27 27 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 28 28 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 29 29 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 30 30 H 1.08001 * 126.91466 * 0.02562 * 13 12 11 31 31 H 1.08997 * 109.47042 * 245.32414 * 15 14 13 32 32 H 1.08998 * 109.47136 * 5.33076 * 15 14 13 33 33 H 1.09004 * 109.47522 * 299.99898 * 16 15 14 34 34 H 1.09001 * 109.47333 * 60.00022 * 16 15 14 35 35 H 1.09004 * 109.46880 * 300.00263 * 17 16 15 36 36 H 1.09001 * 109.47086 * 59.99842 * 17 16 15 37 37 H 1.09004 * 109.47352 * 299.99888 * 18 17 16 38 38 H 1.09001 * 109.47304 * 59.99889 * 18 17 16 39 39 H 1.08997 * 109.46883 * 299.99779 * 19 18 17 40 40 H 1.09001 * 109.47086 * 59.99756 * 19 18 17 41 41 H 1.00900 * 111.00159 * 56.04556 * 20 19 18 42 42 H 1.00904 * 110.99742 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5515 -2.6367 0.0001 12 6 6.0538 -4.0575 -0.0004 13 6 6.9059 -4.6149 -0.8920 14 7 7.0754 -5.8988 -0.4997 15 6 7.9200 -6.8949 -1.1637 16 6 8.9060 -7.4830 -0.1523 17 6 9.7885 -8.5229 -0.8458 18 6 10.7740 -9.1114 0.1656 19 6 11.6569 -10.1508 -0.5280 20 7 12.6036 -10.7155 0.4430 21 7 6.3621 -6.0962 0.5533 22 7 5.7405 -5.0176 0.8769 23 1 -0.4849 0.8402 0.0004 24 1 3.8751 -0.6798 0.8895 25 1 3.8745 -0.6809 -0.8904 26 1 3.6584 -3.1503 0.8903 27 1 3.6578 -3.1507 -0.8897 28 1 5.9148 -2.1229 -0.8898 29 1 5.9147 -2.1229 0.8901 30 1 7.3614 -4.1314 -1.7436 31 1 7.2943 -7.6913 -1.5665 32 1 8.4717 -6.4206 -1.9753 33 1 9.5317 -6.6866 0.2505 34 1 8.3543 -7.9573 0.6594 35 1 9.1630 -9.3194 -1.2490 36 1 10.3401 -8.0481 -1.6572 37 1 11.3995 -8.3151 0.5692 38 1 10.2220 -9.5862 0.9768 39 1 11.0318 -10.9471 -0.9318 40 1 12.2089 -9.6756 -1.3389 41 1 12.1179 -11.1051 1.2370 42 1 13.1983 -11.4055 0.0090 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254157031.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:27:24 Heat of formation + Delta-G solvation = 34.964563 kcal Electronic energy + Delta-G solvation = -18873.129384 eV Core-core repulsion = 15887.953295 eV Total energy + Delta-G solvation = -2985.176089 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.16947 -37.93632 -36.83064 -35.93383 -34.51692 -33.66386 -32.22549 -30.37917 -29.04565 -26.48584 -25.38283 -23.43618 -22.68423 -22.14049 -21.97814 -21.15011 -18.89468 -18.02613 -17.41728 -17.02592 -16.42208 -16.27700 -16.07324 -15.61725 -15.41910 -15.14098 -14.82185 -14.43403 -14.26242 -13.83828 -13.57132 -13.36593 -13.01372 -12.86166 -12.60639 -12.47684 -12.35532 -12.16241 -11.91949 -11.84508 -11.70280 -11.57050 -11.49544 -11.31576 -11.23179 -10.89232 -10.72612 -10.00139 -9.63315 -8.26171 -6.31022 0.70287 1.39248 1.43137 1.54172 1.55706 1.59077 2.40791 3.09109 3.40419 3.47938 3.71842 3.89619 3.95055 3.98402 4.09426 4.22148 4.29447 4.39985 4.43594 4.47950 4.53521 4.65823 4.71014 4.73278 4.87307 4.88940 4.96513 5.09110 5.11540 5.13490 5.19368 5.28795 5.35008 5.40984 5.60030 5.67886 5.71934 5.77515 6.22439 6.33023 6.55218 6.77264 7.33274 7.59122 8.91353 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.070143 B = 0.002276 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.090134 B =12299.338013 C =12430.420874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.003 4.003 3 Si 0.960 3.040 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.241 1.241 7 C -0.538 4.538 8 H 0.020 0.980 9 C -0.010 4.010 10 C -0.086 4.086 11 C -0.027 4.027 12 C -0.035 4.035 13 C -0.034 4.034 14 N -0.286 5.286 15 C 0.107 3.893 16 C -0.125 4.125 17 C -0.105 4.105 18 C -0.118 4.118 19 C 0.060 3.940 20 N -0.868 5.868 21 N -0.121 5.121 22 N -0.314 5.314 23 H 0.266 0.734 24 H 0.023 0.977 25 H 0.032 0.968 26 H 0.031 0.969 27 H 0.039 0.961 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.237 0.763 31 H 0.109 0.891 32 H 0.144 0.856 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.033 0.967 40 H 0.075 0.925 41 H 0.344 0.656 42 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.121 -18.127 -6.940 34.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.199 4.199 3 Si 0.783 3.217 4 H -0.185 1.185 5 H -0.212 1.212 6 H -0.164 1.164 7 C -0.576 4.576 8 H 0.038 0.962 9 C -0.047 4.047 10 C -0.124 4.124 11 C -0.066 4.066 12 C -0.174 4.174 13 C -0.185 4.185 14 N -0.080 5.080 15 C -0.012 4.012 16 C -0.164 4.164 17 C -0.143 4.143 18 C -0.156 4.156 19 C -0.070 4.070 20 N -0.398 5.398 21 N -0.100 5.100 22 N -0.180 5.180 23 H 0.074 0.926 24 H 0.041 0.959 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.127 0.873 29 H 0.096 0.904 30 H 0.253 0.747 31 H 0.127 0.873 32 H 0.162 0.838 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.093 0.907 41 H 0.157 0.843 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 28.850 -18.372 -5.818 34.695 hybrid contribution -0.816 0.208 -0.616 1.044 sum 28.035 -18.163 -6.434 34.018 Atomic orbital electron populations 1.70111 1.08594 1.28191 1.52865 1.26173 0.95735 1.04029 0.93938 0.85511 0.79513 0.77237 0.79487 1.18541 1.21245 1.16418 1.21572 0.92707 0.92813 1.50470 0.96153 1.19547 0.93399 0.94704 0.97088 1.21201 0.94362 0.97071 0.99761 1.19969 0.94411 0.87937 1.04259 1.22417 1.01214 0.98518 0.95290 1.24023 1.04582 0.85288 1.04605 1.47777 1.30606 1.10697 1.18919 1.22619 0.92040 0.90551 0.96012 1.21793 0.96993 0.99483 0.98112 1.21402 0.96910 0.97729 0.98293 1.21532 0.97082 0.98603 0.98358 1.21814 0.93697 0.96707 0.94819 1.58736 1.25875 1.43074 1.12148 1.78143 1.07764 1.20498 1.03568 1.75033 1.20113 0.97450 1.25396 0.92561 0.95913 0.95001 0.94969 0.94182 0.87294 0.90409 0.74685 0.87311 0.83782 0.91777 0.92277 0.90454 0.89523 0.92235 0.92726 0.94836 0.90695 0.84338 0.83744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.43 13.96 21.45 0.30 -62.13 16 2 C 0.00 -0.18 5.47 84.65 0.46 0.29 16 3 Si 0.96 44.98 27.47 68.60 1.88 46.86 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 7 C -0.54 -32.86 9.66 25.60 0.25 -32.61 16 8 H 0.02 1.39 7.99 -2.91 -0.02 1.36 16 9 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 10 C -0.09 -3.65 5.13 30.60 0.16 -3.50 16 11 C -0.03 -0.84 5.79 29.85 0.17 -0.67 16 12 C -0.04 -1.10 6.50 41.59 0.27 -0.83 16 13 C -0.03 -0.72 11.49 83.49 0.96 0.24 16 14 N -0.29 -6.25 3.44 -347.73 -1.20 -7.45 16 15 C 0.11 1.12 6.46 86.38 0.56 1.67 16 16 C -0.13 -1.38 5.34 30.60 0.16 -1.22 16 17 C -0.10 -0.65 5.21 30.59 0.16 -0.49 16 18 C -0.12 -1.08 5.47 30.59 0.17 -0.92 16 19 C 0.06 0.48 6.79 86.31 0.59 1.07 16 20 N -0.87 -7.89 9.62 -186.72 -1.80 -9.68 16 21 N -0.12 -3.87 12.91 37.02 0.48 -3.39 16 22 N -0.31 -11.79 12.40 -48.60 -0.60 -12.40 16 23 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 24 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 25 H 0.03 1.41 7.57 -2.39 -0.02 1.39 16 26 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.11 2.66 8.12 -2.39 -0.02 2.64 16 29 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.24 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.14 0.39 8.07 -2.39 -0.02 0.37 16 33 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16 35 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 36 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.06 0.70 8.14 -2.38 -0.02 0.69 16 38 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.03 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.34 2.66 8.99 -89.69 -0.81 1.86 16 42 H 0.35 2.10 9.08 -89.69 -0.81 1.29 16 Total: -1.00 -82.34 348.99 2.41 -79.93 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -0.68 Total: 5.60 kcal Atomic # 6 Polarization: -41.36 SS G_CDS: 4.02 Total: -37.34 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -2.82 Total: -95.05 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -82.34 2.41 -79.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254157031.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.892 kcal (2) G-P(sol) polarization free energy of solvation -82.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds