Wall clock time and date at job start Mon Mar 30 2020 19:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99764 * 2 1 4 4 C 1.53001 * 109.47101 * 125.00270 * 3 2 1 5 5 C 1.52997 * 109.46943 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47291 * 179.97438 * 5 4 3 7 7 O 1.21284 * 119.99351 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00481 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99419 * 0.02562 * 8 6 5 10 10 C 1.46497 * 120.00148 * 179.97438 * 8 6 5 11 11 H 1.09002 * 110.91399 * 350.51772 * 10 8 6 12 12 C 1.55151 * 111.00623 * 226.61211 * 10 8 6 13 13 C 1.54320 * 102.94334 * 277.43135 * 12 10 8 14 14 N 1.47027 * 107.27334 * 337.80272 * 13 12 10 15 15 C 1.36929 * 125.65463 * 178.97337 * 14 13 12 16 16 H 1.08003 * 120.00350 * 179.97438 * 15 14 13 17 17 C 1.38819 * 119.99970 * 359.97438 * 15 14 13 18 18 N 1.31620 * 119.99766 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00218 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47252 * 89.99968 * 19 17 15 21 21 H 1.48506 * 109.47067 * 209.99714 * 19 17 15 22 22 H 1.48505 * 109.47134 * 329.99724 * 19 17 15 23 23 C 1.47423 * 108.69771 * 358.94803 * 14 13 12 24 24 H 1.07998 * 119.99687 * 180.02562 * 1 2 3 25 25 H 1.07999 * 120.00164 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99535 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47337 * 4.99900 * 3 2 1 28 28 H 1.09003 * 109.47107 * 245.00324 * 3 2 1 29 29 H 1.09000 * 109.46813 * 59.99657 * 4 3 2 30 30 H 1.08993 * 109.46806 * 299.99590 * 4 3 2 31 31 H 1.09000 * 109.47246 * 60.00412 * 5 4 3 32 32 H 1.09003 * 109.47587 * 300.00251 * 5 4 3 33 33 H 1.09001 * 109.47209 * 263.94367 * 9 8 6 34 34 H 1.09003 * 109.47593 * 23.95065 * 9 8 6 35 35 H 1.09009 * 109.46707 * 143.94898 * 9 8 6 36 36 H 1.08995 * 110.71977 * 159.06502 * 12 10 8 37 37 H 1.09001 * 110.72028 * 35.79299 * 12 10 8 38 38 H 1.09005 * 109.88400 * 218.38885 * 13 12 10 39 39 H 1.09003 * 109.88629 * 97.22164 * 13 12 10 40 40 H 0.96994 * 120.00135 * 180.02562 * 18 17 15 41 41 H 1.08996 * 110.36886 * 142.96549 * 23 14 13 42 42 H 1.09005 * 110.36401 * 265.28278 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.8004 2.6579 1.1812 6 6 4.7570 2.6858 2.3454 7 8 4.8206 1.7390 3.1007 8 7 5.5425 3.7623 2.5466 9 6 5.4660 4.9056 1.6338 10 6 6.4720 3.7896 3.6787 11 1 6.2918 2.9502 4.3503 12 6 6.3831 5.1392 4.4388 13 6 7.2861 6.0683 3.6004 14 7 8.2105 5.2116 2.8432 15 6 9.1634 5.6486 1.9623 16 1 9.7963 4.9362 1.4540 17 6 9.3161 7.0074 1.7226 18 7 8.5445 7.8756 2.3416 19 14 10.6165 7.6036 0.5215 20 1 10.0327 7.6816 -0.8417 21 1 11.0918 8.9487 0.9340 22 1 11.7588 6.6547 0.5173 23 6 7.9419 3.8041 3.1899 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6212 1.4027 -0.9314 29 1 3.7400 0.5065 1.0920 30 1 2.4773 1.2356 2.1129 31 1 3.0958 3.4846 1.2706 32 1 4.3582 2.7551 0.2497 33 1 6.2480 4.8211 0.8792 34 1 4.4908 4.9173 1.1469 35 1 5.6023 5.8294 2.1964 36 1 6.7704 5.0371 5.4525 37 1 5.3573 5.5076 4.4520 38 1 7.8491 6.7305 4.2581 39 1 6.6773 6.6553 2.9127 40 1 8.6508 8.8250 2.1739 41 1 8.0559 3.1687 2.3117 42 1 8.6097 3.4755 3.9863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715016708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:44 Heat of formation + Delta-G solvation = -8.768863 kcal Electronic energy + Delta-G solvation = -20703.586790 eV Core-core repulsion = 17684.221526 eV Total energy + Delta-G solvation = -3019.365264 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.23352 -39.12472 -36.83030 -35.84170 -34.10572 -33.10680 -31.09044 -29.82113 -28.14887 -27.25265 -26.11286 -23.47796 -21.96727 -21.57823 -20.68416 -19.73657 -18.92972 -18.19687 -17.12111 -17.04409 -16.65691 -16.05329 -15.67241 -15.57509 -15.11251 -14.60468 -14.23921 -14.13507 -13.84262 -13.52236 -13.40692 -13.26796 -13.04430 -12.84216 -12.76633 -12.51056 -12.44103 -12.27470 -12.03686 -11.93491 -11.79511 -11.69071 -11.60406 -11.51872 -10.74720 -10.60903 -10.15689 -9.63938 -8.78875 -7.82053 -5.15980 1.44895 1.48493 1.49396 1.57658 1.66544 2.10629 2.51355 3.37186 3.58452 3.68932 3.88599 3.91026 4.03543 4.08893 4.30673 4.35100 4.35756 4.41992 4.62177 4.64393 4.66450 4.73418 4.75060 4.80805 4.89243 4.96710 4.98817 5.03696 5.10188 5.16811 5.25817 5.42507 5.48584 5.63295 5.68917 5.81385 5.83293 5.94301 6.22392 6.54597 7.14060 7.21952 7.78896 8.44365 9.27849 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028106 B = 0.004051 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.006957 B = 6910.211663 C = 7402.887861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C -0.090 4.090 4 C -0.092 4.092 5 C -0.132 4.132 6 C 0.505 3.495 7 O -0.589 6.589 8 N -0.594 5.594 9 C 0.081 3.919 10 C 0.132 3.868 11 H 0.102 0.898 12 C -0.140 4.140 13 C 0.183 3.817 14 N -0.615 5.615 15 C -0.237 4.237 16 H 0.074 0.926 17 C -0.056 4.056 18 N -0.945 5.945 19 Si 0.972 3.028 20 H -0.284 1.284 21 H -0.296 1.296 22 H -0.277 1.277 23 C 0.125 3.875 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.040 0.960 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.004 0.996 39 H 0.040 0.960 40 H 0.247 0.753 41 H 0.033 0.967 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.180 -9.305 -3.902 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.184 4.184 3 C -0.127 4.127 4 C -0.130 4.130 5 C -0.171 4.171 6 C 0.296 3.704 7 O -0.471 6.471 8 N -0.325 5.325 9 C -0.062 4.062 10 C 0.027 3.973 11 H 0.120 0.880 12 C -0.179 4.179 13 C 0.058 3.942 14 N -0.342 5.342 15 C -0.366 4.366 16 H 0.092 0.908 17 C -0.249 4.249 18 N -0.594 5.594 19 Si 0.801 3.199 20 H -0.211 1.211 21 H -0.223 1.223 22 H -0.202 1.202 23 C -0.002 4.002 24 H 0.122 0.878 25 H 0.121 0.879 26 H 0.125 0.875 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.058 0.942 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.022 0.978 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -14.055 -9.589 -3.596 17.391 hybrid contribution 1.226 0.607 -0.391 1.423 sum -12.829 -8.983 -3.986 16.160 Atomic orbital electron populations 1.24014 0.95842 1.02552 1.00998 1.23072 0.96451 0.98783 1.00060 1.20764 0.97958 0.95773 0.98206 1.21196 0.97449 0.95643 0.98707 1.21764 0.97779 1.01277 0.96276 1.21444 0.81055 0.80954 0.86948 1.90628 1.70475 1.36462 1.49511 1.47815 1.38413 1.17993 1.28250 1.22034 1.01975 0.88792 0.93352 1.22050 0.88595 0.98678 0.88015 0.87978 1.23105 1.00679 0.94916 0.99161 1.21125 0.89995 0.90921 0.92115 1.44649 1.39602 1.00851 1.49109 1.19294 1.09878 0.91311 1.16084 0.90838 1.25467 1.01573 0.95916 1.01995 1.70132 1.42031 1.00799 1.46399 0.85177 0.78973 0.77028 0.78697 1.21071 1.22269 1.20206 1.21988 0.94058 0.86760 0.97351 0.87845 0.87910 0.87537 0.90324 0.90014 0.92726 0.92562 0.86569 0.87432 0.94167 0.88371 0.90855 0.89938 0.89872 0.97773 0.94254 0.94353 0.94834 0.95162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.83 14.32 67.78 0.97 -1.86 16 2 C -0.17 -2.68 9.52 25.64 0.24 -2.44 16 3 C -0.09 -1.41 5.66 29.85 0.17 -1.24 16 4 C -0.09 -1.91 4.49 30.59 0.14 -1.77 16 5 C -0.13 -2.79 4.17 29.85 0.12 -2.67 16 6 C 0.51 15.70 7.67 87.66 0.67 16.38 16 7 O -0.59 -22.23 15.39 -3.04 -0.05 -22.27 16 8 N -0.59 -19.59 2.91 -814.82 -2.37 -21.96 16 9 C 0.08 2.54 9.05 127.77 1.16 3.70 16 10 C 0.13 4.77 3.64 46.38 0.17 4.94 16 11 H 0.10 3.67 7.07 -2.39 -0.02 3.65 16 12 C -0.14 -5.01 6.07 31.78 0.19 -4.82 16 13 C 0.18 8.48 4.35 86.73 0.38 8.85 16 14 N -0.62 -30.32 2.87 -691.97 -1.98 -32.30 16 15 C -0.24 -12.83 10.28 84.04 0.86 -11.97 16 16 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 17 C -0.06 -3.05 5.49 84.86 0.47 -2.59 16 18 N -0.94 -53.82 10.31 21.65 0.22 -53.60 16 19 Si 0.97 44.50 29.55 68.60 2.03 46.53 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 C 0.12 5.25 6.76 86.86 0.59 5.84 16 24 H 0.10 1.27 8.06 -2.91 -0.02 1.25 16 25 H 0.10 1.30 7.84 -2.91 -0.02 1.28 16 26 H 0.11 1.70 8.06 -2.91 -0.02 1.68 16 27 H 0.08 1.06 7.79 -2.39 -0.02 1.04 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 30 H 0.06 1.31 8.10 -2.39 -0.02 1.30 16 31 H 0.12 1.92 7.42 -2.39 -0.02 1.90 16 32 H 0.11 2.02 8.11 -2.39 -0.02 2.00 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 34 H 0.10 2.21 6.23 -2.39 -0.01 2.20 16 35 H 0.07 2.67 4.19 -2.38 -0.01 2.66 16 36 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.08 2.68 8.07 -2.39 -0.02 2.66 16 38 H 0.00 0.22 7.51 -2.38 -0.02 0.20 16 39 H 0.04 1.95 5.10 -2.39 -0.01 1.94 16 40 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 41 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -64.85 332.29 4.95 -59.89 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.98 Total: 13.35 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 6.13 Total: 10.35 kcal Atomic # 7 Polarization: -103.72 SS G_CDS: -4.13 Total: -107.85 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.05 Total: -22.27 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -64.85 4.95 -59.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715016708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.126 kcal (2) G-P(sol) polarization free energy of solvation -64.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds