Wall clock time and date at job start Mon Mar 30 2020 19:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46707 * 2 1 4 4 C 1.52997 * 109.47356 * 120.00391 * 2 1 3 5 5 C 1.53001 * 109.46931 * 294.47116 * 4 2 1 6 6 C 1.50701 * 109.46770 * 179.50986 * 5 4 2 7 7 H 1.08000 * 120.00347 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99550 * 180.27399 * 6 5 4 9 9 N 1.31511 * 119.99996 * 359.71911 * 8 6 5 10 10 Si 1.86801 * 119.99664 * 179.72443 * 8 6 5 11 11 H 1.48502 * 109.47200 * 60.00110 * 10 8 6 12 12 H 1.48503 * 109.46905 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46966 * 299.99727 * 10 8 6 14 14 N 1.46902 * 109.46925 * 240.00683 * 2 1 3 15 15 C 1.47599 * 111.00110 * 178.56700 * 14 2 1 16 16 C 1.53609 * 105.61505 * 208.20423 * 15 14 2 17 17 H 1.08994 * 109.19464 * 270.49360 * 16 15 14 18 18 C 1.51670 * 110.87209 * 149.59648 * 16 15 14 19 19 C 1.53699 * 111.01903 * 180.43877 * 18 16 15 20 20 N 1.49937 * 106.16934 * 103.93505 * 19 18 16 21 21 C 1.43624 * 107.74371 * 286.60289 * 20 19 18 22 22 C 1.50691 * 115.42971 * 63.03613 * 21 20 19 23 23 C 1.52021 * 112.08377 * 269.78407 * 22 21 20 24 24 H 1.09001 * 111.77882 * 322.95961 * 23 22 21 25 25 C 1.47201 * 111.00223 * 58.84682 * 14 2 1 26 26 H 1.09003 * 109.46892 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47188 * 299.99522 * 1 2 3 28 28 H 1.09001 * 109.47129 * 59.99862 * 1 2 3 29 29 H 1.09000 * 109.47083 * 174.46500 * 4 2 1 30 30 H 1.09000 * 109.47103 * 54.46653 * 4 2 1 31 31 H 1.08993 * 109.47264 * 59.50528 * 5 4 2 32 32 H 1.09008 * 109.46781 * 299.50425 * 5 4 2 33 33 H 0.96999 * 119.99796 * 180.02562 * 9 8 6 34 34 H 1.09000 * 110.21450 * 327.24585 * 15 14 2 35 35 H 1.09005 * 110.21763 * 89.16796 * 15 14 2 36 36 H 1.08994 * 109.16787 * 300.83958 * 18 16 15 37 37 H 1.09007 * 109.16330 * 60.09955 * 18 16 15 38 38 H 1.08997 * 110.10503 * 223.09803 * 19 18 16 39 39 H 1.08998 * 110.10505 * 344.65991 * 19 18 16 40 40 H 1.00895 * 110.99495 * 48.33006 * 20 19 18 41 41 H 1.08997 * 108.29087 * 184.58121 * 21 20 19 42 42 H 1.08998 * 108.29293 * 301.49021 * 21 20 19 43 43 H 1.09006 * 108.95612 * 149.11043 * 22 21 20 44 44 H 1.09002 * 108.95690 * 30.45718 * 22 21 20 45 45 H 1.09000 * 109.79310 * 261.49660 * 25 14 2 46 46 H 1.08993 * 109.79129 * 22.31896 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6467 0.0757 2.4946 6 6 2.1387 -0.6410 3.7256 7 1 2.6776 -1.5720 3.6294 8 6 1.8954 -0.1113 4.9751 9 7 1.2388 1.0222 5.0923 10 14 2.4984 -1.0035 6.5014 11 1 3.9769 -1.1321 6.4479 12 1 2.1126 -0.2324 7.7105 13 1 1.8857 -2.3550 6.5592 14 7 2.0196 -0.6924 -1.1995 15 6 3.4947 -0.6823 -1.2511 16 6 3.8567 -0.7387 -2.7428 17 1 3.9410 -1.7804 -3.0520 18 6 5.1660 -0.0207 -3.0086 19 6 5.5260 -0.0656 -4.5022 20 7 5.2169 1.2965 -5.0474 21 6 3.7886 1.4193 -5.1345 22 6 3.0517 1.3475 -3.8220 23 6 2.6560 -0.0764 -3.4659 24 1 2.3623 -0.6469 -4.3470 25 6 1.5252 -0.0409 -2.4235 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.1256 -0.8079 1.2009 30 1 1.5981 -1.7164 1.3000 31 1 0.5617 0.1697 2.5380 32 1 2.0959 1.0678 2.4479 33 1 1.0680 1.3951 5.9713 34 1 3.8810 0.2336 -0.8039 35 1 3.8957 -1.5535 -0.7329 36 1 5.0746 1.0187 -2.6936 37 1 5.9597 -0.4999 -2.4354 38 1 6.5862 -0.2869 -4.6256 39 1 4.9247 -0.8197 -5.0100 40 1 5.6067 2.0181 -4.4597 41 1 3.5554 2.3740 -5.6059 42 1 3.4156 0.6242 -5.7801 43 1 2.1520 1.9594 -3.8871 44 1 3.6919 1.7447 -3.0343 45 1 0.6565 -0.5790 -2.8029 46 1 1.2545 0.9926 -2.2078 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246940607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:27:15 Heat of formation + Delta-G solvation = -10.737494 kcal Electronic energy + Delta-G solvation = -21275.450658 eV Core-core repulsion = 18391.833122 eV Total energy + Delta-G solvation = -2883.617536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.54817 -37.72040 -34.84408 -32.90513 -32.55514 -30.88912 -29.02981 -28.01760 -25.94329 -25.02524 -23.09948 -22.24681 -22.23401 -20.83962 -19.19815 -18.75580 -16.81823 -16.50957 -15.88538 -15.01247 -14.84388 -14.67988 -14.55108 -14.27741 -13.61241 -13.44964 -13.16721 -12.77451 -12.62323 -12.41510 -12.20474 -11.92100 -11.71777 -11.55089 -11.30573 -11.21475 -11.07854 -11.00035 -10.70386 -10.62966 -10.52014 -10.39659 -10.27234 -10.21673 -9.60270 -9.27553 -9.01900 -8.78285 -8.31798 -7.99751 -5.98327 -4.00126 3.34182 3.38265 3.41088 4.06990 4.17119 4.40302 4.46015 4.48745 4.68856 4.76030 4.92410 4.99410 5.15525 5.33651 5.37247 5.37335 5.44322 5.48295 5.56316 5.63366 5.68887 5.72349 5.76877 5.82129 5.83295 5.89363 5.94298 5.97881 6.13334 6.20176 6.32011 6.34393 6.45926 6.63925 6.66579 6.76048 6.78899 7.11307 7.13603 7.32040 7.49609 7.70641 7.86236 8.02313 8.46100 9.06802 9.63550 11.13047 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.031094 B = 0.003792 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.265825 B = 7382.501494 C = 7797.848844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.077 3.923 3 H 0.034 0.966 4 C -0.100 4.100 5 C 0.023 3.977 6 C -0.519 4.519 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.520 5.520 15 C 0.049 3.951 16 C -0.091 4.091 17 H 0.074 0.926 18 C -0.149 4.149 19 C 0.047 3.953 20 N -0.671 5.671 21 C 0.052 3.948 22 C -0.154 4.154 23 C -0.090 4.090 24 H 0.081 0.919 25 C 0.046 3.954 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.020 0.980 32 H 0.011 0.989 33 H 0.260 0.740 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.339 0.661 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.800 -0.191 -20.231 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.030 4.030 3 H 0.052 0.948 4 C -0.138 4.138 5 C -0.015 4.015 6 C -0.557 4.557 7 H 0.072 0.928 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 N -0.244 5.244 15 C -0.079 4.079 16 C -0.110 4.110 17 H 0.093 0.907 18 C -0.188 4.188 19 C -0.081 4.081 20 N -0.299 5.299 21 C -0.080 4.080 22 C -0.194 4.194 23 C -0.109 4.109 24 H 0.099 0.901 25 C -0.082 4.082 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.156 0.844 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.638 -0.726 -20.766 21.290 hybrid contribution 0.232 0.521 2.020 2.099 sum 4.870 -0.205 -18.746 19.369 Atomic orbital electron populations 1.21871 0.94678 1.02135 1.01209 1.21960 0.95596 0.95231 0.90227 0.94791 1.21685 0.99275 0.99523 0.93355 1.19129 0.96912 0.94864 0.90582 1.21227 1.35628 1.07679 0.91193 0.92811 1.25016 0.95301 0.95022 0.99091 1.69953 1.40992 1.19019 1.23661 0.86674 0.79219 0.79783 0.82422 1.20291 1.21309 1.20217 1.63809 1.06939 1.51959 1.01739 1.22744 0.88866 1.01216 0.95031 1.21808 0.93756 0.99929 0.95486 0.90726 1.22395 0.97255 1.01317 0.97864 1.22946 1.01321 0.91391 0.92483 1.61869 1.10001 1.04286 1.53758 1.21033 0.88178 1.02471 0.96279 1.21992 1.01283 0.96992 0.99104 1.22012 0.94867 0.95663 0.98328 0.90083 1.22768 0.97393 0.97737 0.90271 0.92258 0.91163 0.94036 0.93576 0.92667 0.96171 0.97086 0.93007 0.94039 0.90235 0.91309 0.91457 0.90543 0.90371 0.84380 0.91638 0.91381 0.91686 0.91412 0.90973 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.82 37.16 0.33 -2.07 16 2 C 0.08 1.39 1.74 -67.71 -0.12 1.27 16 3 H 0.03 0.64 8.01 -51.93 -0.42 0.23 16 4 C -0.10 -2.14 4.64 -26.73 -0.12 -2.26 16 5 C 0.02 0.59 4.75 -27.88 -0.13 0.46 16 6 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 7 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 9 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 10 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 N -0.52 -8.00 5.05 -224.87 -1.14 -9.14 16 15 C 0.05 0.69 4.86 -3.12 -0.02 0.68 16 16 C -0.09 -0.99 2.61 -89.91 -0.23 -1.22 16 17 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 18 C -0.15 -1.39 4.59 -27.04 -0.12 -1.51 16 19 C 0.05 0.39 6.55 -1.76 -0.01 0.38 16 20 N -0.67 -5.77 7.10 -114.71 -0.81 -6.58 16 21 C 0.05 0.44 5.75 -6.72 -0.04 0.40 16 22 C -0.15 -1.45 4.51 -28.39 -0.13 -1.58 16 23 C -0.09 -0.94 3.10 -89.62 -0.28 -1.21 16 24 H 0.08 0.79 7.75 -51.93 -0.40 0.38 16 25 C 0.05 0.59 5.13 -3.23 -0.02 0.58 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.07 1.30 6.57 -51.93 -0.34 0.96 16 28 H 0.04 0.61 6.88 -51.93 -0.36 0.25 16 29 H 0.05 0.97 6.88 -51.93 -0.36 0.62 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.02 0.55 6.56 -51.93 -0.34 0.21 16 32 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.04 0.63 7.60 -51.93 -0.39 0.23 16 35 H 0.08 1.17 7.88 -51.93 -0.41 0.76 16 36 H 0.07 0.68 5.17 -51.93 -0.27 0.41 16 37 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.66 7.42 -51.93 -0.39 0.28 16 40 H 0.34 2.69 8.24 -39.29 -0.32 2.36 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.59 7.35 -51.93 -0.38 0.20 16 43 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 44 H 0.07 0.71 5.67 -51.93 -0.29 0.41 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.04 0.59 6.45 -51.93 -0.34 0.25 16 LS Contribution 335.21 15.07 5.05 5.05 Total: -1.00 -29.78 335.21 -10.82 -40.60 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -8.33 Total: -0.59 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -1.30 Total: -19.79 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: -1.21 Total: -42.15 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.78 -10.82 -40.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246940607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.859 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds