Wall clock time and date at job start Mon Mar 30 2020 19:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46707 * 2 1 4 4 C 1.52997 * 109.47356 * 120.00391 * 2 1 3 5 5 C 1.53001 * 109.46931 * 294.47116 * 4 2 1 6 6 C 1.50701 * 109.46770 * 179.50986 * 5 4 2 7 7 H 1.08000 * 120.00347 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99550 * 180.27399 * 6 5 4 9 9 N 1.31511 * 119.99996 * 359.71911 * 8 6 5 10 10 Si 1.86801 * 119.99664 * 179.72443 * 8 6 5 11 11 H 1.48502 * 109.47200 * 60.00110 * 10 8 6 12 12 H 1.48503 * 109.46905 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46966 * 299.99727 * 10 8 6 14 14 N 1.46902 * 109.46925 * 240.00683 * 2 1 3 15 15 C 1.47599 * 111.00110 * 178.56700 * 14 2 1 16 16 C 1.53609 * 105.61505 * 208.20423 * 15 14 2 17 17 H 1.08994 * 109.19464 * 270.49360 * 16 15 14 18 18 C 1.51670 * 110.87209 * 149.59648 * 16 15 14 19 19 C 1.53699 * 111.01903 * 180.43877 * 18 16 15 20 20 N 1.49937 * 106.16934 * 103.93505 * 19 18 16 21 21 C 1.43624 * 107.74371 * 286.60289 * 20 19 18 22 22 C 1.50691 * 115.42971 * 63.03613 * 21 20 19 23 23 C 1.52021 * 112.08377 * 269.78407 * 22 21 20 24 24 H 1.09001 * 111.77882 * 322.95961 * 23 22 21 25 25 C 1.47201 * 111.00223 * 58.84682 * 14 2 1 26 26 H 1.09003 * 109.46892 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47188 * 299.99522 * 1 2 3 28 28 H 1.09001 * 109.47129 * 59.99862 * 1 2 3 29 29 H 1.09000 * 109.47083 * 174.46500 * 4 2 1 30 30 H 1.09000 * 109.47103 * 54.46653 * 4 2 1 31 31 H 1.08993 * 109.47264 * 59.50528 * 5 4 2 32 32 H 1.09008 * 109.46781 * 299.50425 * 5 4 2 33 33 H 0.96999 * 119.99796 * 180.02562 * 9 8 6 34 34 H 1.09000 * 110.21450 * 327.24585 * 15 14 2 35 35 H 1.09005 * 110.21763 * 89.16796 * 15 14 2 36 36 H 1.08994 * 109.16787 * 300.83958 * 18 16 15 37 37 H 1.09007 * 109.16330 * 60.09955 * 18 16 15 38 38 H 1.08997 * 110.10503 * 223.09803 * 19 18 16 39 39 H 1.08998 * 110.10505 * 344.65991 * 19 18 16 40 40 H 1.00895 * 110.99495 * 48.33006 * 20 19 18 41 41 H 1.08997 * 108.29087 * 184.58121 * 21 20 19 42 42 H 1.08998 * 108.29293 * 301.49021 * 21 20 19 43 43 H 1.09006 * 108.95612 * 149.11043 * 22 21 20 44 44 H 1.09002 * 108.95690 * 30.45718 * 22 21 20 45 45 H 1.09000 * 109.79310 * 261.49660 * 25 14 2 46 46 H 1.08993 * 109.79129 * 22.31896 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6467 0.0757 2.4946 6 6 2.1387 -0.6410 3.7256 7 1 2.6776 -1.5720 3.6294 8 6 1.8954 -0.1113 4.9751 9 7 1.2388 1.0222 5.0923 10 14 2.4984 -1.0035 6.5014 11 1 3.9769 -1.1321 6.4479 12 1 2.1126 -0.2324 7.7105 13 1 1.8857 -2.3550 6.5592 14 7 2.0196 -0.6924 -1.1995 15 6 3.4947 -0.6823 -1.2511 16 6 3.8567 -0.7387 -2.7428 17 1 3.9410 -1.7804 -3.0520 18 6 5.1660 -0.0207 -3.0086 19 6 5.5260 -0.0656 -4.5022 20 7 5.2169 1.2965 -5.0474 21 6 3.7886 1.4193 -5.1345 22 6 3.0517 1.3475 -3.8220 23 6 2.6560 -0.0764 -3.4659 24 1 2.3623 -0.6469 -4.3470 25 6 1.5252 -0.0409 -2.4235 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.1256 -0.8079 1.2009 30 1 1.5981 -1.7164 1.3000 31 1 0.5617 0.1697 2.5380 32 1 2.0959 1.0678 2.4479 33 1 1.0680 1.3951 5.9713 34 1 3.8810 0.2336 -0.8039 35 1 3.8957 -1.5535 -0.7329 36 1 5.0746 1.0187 -2.6936 37 1 5.9597 -0.4999 -2.4354 38 1 6.5862 -0.2869 -4.6256 39 1 4.9247 -0.8197 -5.0100 40 1 5.6067 2.0181 -4.4597 41 1 3.5554 2.3740 -5.6059 42 1 3.4156 0.6242 -5.7801 43 1 2.1520 1.9594 -3.8871 44 1 3.6919 1.7447 -3.0343 45 1 0.6565 -0.5790 -2.8029 46 1 1.2545 0.9926 -2.2078 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246940607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:27:15 Heat of formation + Delta-G solvation = -30.475456 kcal Electronic energy + Delta-G solvation = -21276.306560 eV Core-core repulsion = 18391.833122 eV Total energy + Delta-G solvation = -2884.473438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.49263 -38.81775 -36.30183 -34.73686 -33.40067 -32.37512 -30.41625 -29.22075 -27.10652 -26.67987 -24.14676 -23.65312 -22.96322 -22.27369 -20.73115 -19.63789 -18.56749 -17.62441 -17.13412 -16.48013 -16.10400 -15.82076 -15.69666 -15.46703 -14.70337 -14.65431 -14.48115 -14.05740 -13.88178 -13.62991 -13.58494 -13.27859 -13.03201 -12.87641 -12.65457 -12.52731 -12.44300 -12.29780 -12.09634 -12.04208 -11.88172 -11.55448 -11.48829 -11.28743 -11.16801 -11.10020 -11.02946 -10.54948 -9.55013 -9.18730 -8.21670 -6.32734 1.37934 1.41140 1.49141 2.39239 2.97409 3.11165 3.42937 3.51206 3.57596 3.78406 3.96969 4.03381 4.11356 4.16447 4.24885 4.37548 4.42179 4.43407 4.59053 4.65103 4.67814 4.75504 4.77247 4.82241 4.90637 4.92497 4.96404 4.97802 5.00624 5.05519 5.06674 5.11693 5.18365 5.27489 5.29820 5.35072 5.49276 5.52880 5.73959 5.83433 5.99854 6.09993 6.12384 6.27460 6.47745 6.83468 7.36198 8.89948 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.031094 B = 0.003792 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.265825 B = 7382.501494 C = 7797.848844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.021 0.979 4 C -0.085 4.085 5 C 0.030 3.970 6 C -0.545 4.545 7 H 0.056 0.944 8 C 0.001 3.999 9 N -0.932 5.932 10 Si 0.964 3.036 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.267 1.267 14 N -0.526 5.526 15 C 0.046 3.954 16 C -0.082 4.082 17 H 0.080 0.920 18 C -0.143 4.143 19 C 0.054 3.946 20 N -0.675 5.675 21 C 0.057 3.943 22 C -0.148 4.148 23 C -0.082 4.082 24 H 0.098 0.902 25 C 0.043 3.957 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.001 0.999 32 H -0.017 1.017 33 H 0.264 0.736 34 H 0.026 0.974 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.342 0.658 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.081 0.919 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.454 -1.081 -21.579 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.021 4.021 3 H 0.038 0.962 4 C -0.123 4.123 5 C -0.008 4.008 6 C -0.583 4.583 7 H 0.075 0.925 8 C -0.197 4.197 9 N -0.572 5.572 10 Si 0.788 3.212 11 H -0.192 1.192 12 H -0.206 1.206 13 H -0.191 1.191 14 N -0.250 5.250 15 C -0.082 4.082 16 C -0.101 4.101 17 H 0.099 0.901 18 C -0.182 4.182 19 C -0.075 4.075 20 N -0.303 5.303 21 C -0.075 4.075 22 C -0.187 4.187 23 C -0.101 4.101 24 H 0.116 0.884 25 C -0.084 4.084 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.020 0.980 32 H 0.002 0.998 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.160 0.840 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.099 0.901 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.297 -1.620 -22.135 22.817 hybrid contribution 0.018 0.822 2.433 2.568 sum 5.315 -0.798 -19.701 20.421 Atomic orbital electron populations 1.21786 0.93846 1.02242 1.01360 1.21694 0.96182 0.94096 0.90131 0.96156 1.21436 0.99088 0.98696 0.93124 1.18992 0.95342 0.94000 0.92459 1.21658 1.36038 1.08111 0.92534 0.92542 1.25964 0.95228 0.95780 1.02680 1.70086 1.41940 1.20529 1.24691 0.85522 0.79038 0.78695 0.77934 1.19235 1.20626 1.19146 1.63755 1.07790 1.51780 1.01659 1.22781 0.88081 0.99941 0.97399 1.21766 0.94736 1.00660 0.92945 0.90129 1.22347 0.96334 1.00641 0.98924 1.22923 1.01971 0.91356 0.91277 1.61892 1.10068 1.04536 1.53847 1.20985 0.87981 1.02981 0.95526 1.21935 1.01273 0.96190 0.99332 1.22005 0.93570 0.96520 0.98010 0.88391 1.22873 0.98602 0.97350 0.89595 0.92108 0.93438 0.91416 0.93785 0.93120 0.98029 0.99821 0.92733 0.95601 0.91245 0.91963 0.91422 0.89613 0.90043 0.84015 0.91038 0.90994 0.91505 0.92651 0.90070 0.94128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 8.82 71.98 0.64 -3.95 16 2 C 0.09 3.18 1.74 44.91 0.08 3.26 16 3 H 0.02 0.80 8.01 -2.39 -0.02 0.78 16 4 C -0.09 -3.75 4.64 30.59 0.14 -3.61 16 5 C 0.03 1.61 4.75 29.85 0.14 1.75 16 6 C -0.55 -32.01 9.11 25.60 0.23 -31.78 16 7 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 8 C 0.00 0.08 5.46 84.66 0.46 0.54 16 9 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 10 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 14 N -0.53 -15.90 5.05 -865.37 -4.37 -20.27 16 15 C 0.05 1.28 4.86 86.37 0.42 1.70 16 16 C -0.08 -1.66 2.61 -10.33 -0.03 -1.68 16 17 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 18 C -0.14 -2.46 4.59 30.39 0.14 -2.32 16 19 C 0.05 0.76 6.55 85.94 0.56 1.33 16 20 N -0.68 -10.11 7.10 -516.82 -3.67 -13.78 16 21 C 0.06 0.82 5.75 86.16 0.50 1.32 16 22 C -0.15 -2.51 4.51 29.52 0.13 -2.38 16 23 C -0.08 -1.54 3.10 -10.14 -0.03 -1.57 16 24 H 0.10 1.58 7.75 -2.39 -0.02 1.56 16 25 C 0.04 1.04 5.13 86.53 0.44 1.48 16 26 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.05 1.81 6.57 -2.39 -0.02 1.80 16 28 H 0.07 1.92 6.88 -2.39 -0.02 1.90 16 29 H 0.04 1.91 6.88 -2.39 -0.02 1.90 16 30 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.00 0.08 6.56 -2.39 -0.02 0.07 16 32 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 33 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.03 0.80 7.60 -2.39 -0.02 0.78 16 35 H 0.07 2.06 7.88 -2.38 -0.02 2.04 16 36 H 0.06 1.17 5.17 -2.39 -0.01 1.16 16 37 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.14 7.42 -2.39 -0.02 1.12 16 40 H 0.34 4.82 8.24 -89.70 -0.74 4.08 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 1.02 7.35 -2.39 -0.02 1.00 16 43 H 0.07 1.13 7.67 -2.38 -0.02 1.11 16 44 H 0.05 1.10 5.67 -2.39 -0.01 1.08 16 45 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.04 1.02 6.45 -2.39 -0.02 1.00 16 Total: -1.00 -64.28 335.21 -1.70 -65.98 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.20 Total: 14.27 kcal Atomic # 6 Polarization: -39.75 SS G_CDS: 3.83 Total: -35.92 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -7.75 Total: -91.36 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -64.28 -1.70 -65.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246940607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.505 kcal (2) G-P(sol) polarization free energy of solvation -64.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds