Wall clock time and date at job start Mon Mar 30 2020 19:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86797 * 119.99616 * 2 1 4 4 H 1.48499 * 109.47033 * 269.99545 * 3 2 1 5 5 H 1.48496 * 109.47502 * 29.99411 * 3 2 1 6 6 H 1.48501 * 109.47063 * 150.00060 * 3 2 1 7 7 C 1.38752 * 120.00251 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 O 1.34922 * 120.00163 * 180.02562 * 7 2 1 10 10 C 1.34308 * 117.00061 * 180.02562 * 9 7 2 11 11 O 1.21208 * 120.00236 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99862 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.46992 * 179.97438 * 12 10 9 14 14 C 1.34779 * 119.99872 * 179.97438 * 13 12 10 15 15 O 1.21553 * 119.99965 * 0.02562 * 14 13 12 16 16 C 1.47859 * 119.99961 * 180.02562 * 14 13 12 17 17 C 1.39595 * 120.13201 * 359.71993 * 16 14 13 18 18 C 1.37942 * 119.90416 * 179.77020 * 17 16 14 19 19 C 1.38349 * 120.17181 * 0.51130 * 18 17 16 20 20 C 1.38545 * 120.26798 * 359.74604 * 19 18 17 21 21 F 1.35098 * 119.95355 * 180.02562 * 20 19 18 22 22 C 1.38209 * 120.09271 * 359.97438 * 20 19 18 23 23 H 0.96997 * 120.00676 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99738 * 12 10 9 25 25 H 1.09001 * 109.47380 * 59.99825 * 12 10 9 26 26 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 27 27 H 1.08004 * 120.04768 * 0.02658 * 17 16 14 28 28 H 1.07997 * 119.91411 * 180.23620 * 18 17 16 29 29 H 1.08006 * 119.86017 * 179.76338 * 19 18 17 30 30 H 1.08003 * 120.08547 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0464 -1.4001 5 1 1.4457 2.6527 0.6999 6 1 3.5458 1.4403 0.7000 7 6 2.0082 -1.2016 0.0005 8 1 1.4683 -2.1369 0.0005 9 8 3.3574 -1.2016 0.0011 10 6 3.9672 -2.3983 0.0010 11 8 3.3071 -3.4148 0.0010 12 6 5.4722 -2.4771 0.0010 13 7 5.8876 -3.8819 0.0016 14 6 7.1980 -4.1971 0.0012 15 8 8.0351 -3.3158 0.0008 16 6 7.6173 -5.6150 0.0012 17 6 6.6582 -6.6294 0.0075 18 6 7.0546 -7.9506 0.0027 19 6 8.4001 -8.2729 0.0023 20 6 9.3579 -7.2719 0.0014 21 9 10.6700 -7.5939 0.0004 22 6 8.9731 -5.9445 0.0004 23 1 -0.4851 0.8400 -0.0004 24 1 5.8618 -1.9829 -0.8890 25 1 5.8619 -1.9829 0.8910 26 1 5.2196 -4.5852 0.0015 27 1 5.6074 -6.3801 0.0120 28 1 6.3128 -8.7355 0.0038 29 1 8.7048 -9.3091 0.0024 30 1 9.7199 -5.1643 -0.0008 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003360109.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:27:20 Heat of formation + Delta-G solvation = -129.806509 kcal Electronic energy + Delta-G solvation = -18795.845927 eV Core-core repulsion = 15278.386920 eV Total energy + Delta-G solvation = -3517.459006 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.074 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.19436 -40.40858 -39.35714 -38.26366 -35.88905 -34.31596 -32.44506 -31.72967 -30.93041 -28.31078 -25.40499 -23.98105 -22.93665 -20.77155 -20.29564 -18.76784 -18.15794 -16.89160 -16.75263 -16.50323 -16.05606 -15.97732 -15.73679 -15.50985 -14.78585 -14.67933 -14.25228 -14.06231 -13.46377 -13.30172 -12.94418 -12.53138 -12.37232 -12.31725 -12.04664 -11.65380 -11.32233 -10.62258 -10.47602 -10.17561 -9.83210 -9.50899 -9.46472 -9.20251 -9.07479 -8.79593 -6.48649 -4.26012 0.39826 0.81984 2.57300 2.81930 2.97503 3.20640 3.24785 3.33298 3.46570 3.89067 4.02120 4.16469 4.36137 4.41840 4.68250 4.74478 4.94490 4.98853 5.33590 5.57356 5.58150 5.63874 5.70394 5.85373 5.89723 5.93182 6.33510 6.44813 7.41352 7.55177 7.90108 8.06223 8.40508 8.87678 9.48143 10.58930 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.048023 B = 0.003465 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.914021 B = 8078.407196 C = 8646.176645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.069 3.931 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.385 4.385 8 H 0.112 0.888 9 O -0.241 6.241 10 C 0.400 3.600 11 O -0.541 6.541 12 C 0.135 3.865 13 N -0.707 5.707 14 C 0.560 3.440 15 O -0.535 6.535 16 C -0.100 4.100 17 C -0.094 4.094 18 C -0.096 4.096 19 C -0.131 4.131 20 C 0.089 3.911 21 F -0.137 7.137 22 C -0.096 4.096 23 H 0.282 0.718 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.412 0.588 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.140 0.860 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.335 -13.237 0.024 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.136 4.136 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.461 4.461 8 H 0.129 0.871 9 O -0.148 6.148 10 C 0.246 3.754 11 O -0.437 6.437 12 C 0.010 3.990 13 N -0.362 5.362 14 C 0.347 3.653 15 O -0.413 6.413 16 C -0.103 4.103 17 C -0.113 4.113 18 C -0.114 4.114 19 C -0.150 4.150 20 C 0.070 3.930 21 F -0.115 7.115 22 C -0.115 4.115 23 H 0.092 0.908 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.252 0.748 27 H 0.157 0.843 28 H 0.159 0.841 29 H 0.158 0.842 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 15.557 -12.690 0.028 20.077 hybrid contribution 0.000 0.323 -0.016 0.323 sum 15.557 -12.368 0.012 19.874 Atomic orbital electron populations 1.69593 1.05761 1.28715 1.46623 1.24560 0.95029 0.98843 0.95179 0.86214 0.80373 0.81273 0.79134 1.19678 1.20596 1.18192 1.20659 0.75727 0.97145 1.52538 0.87067 1.83484 1.24321 1.30645 1.76328 1.22655 0.90074 0.83141 0.79535 1.90579 1.66498 1.36162 1.50499 1.20467 0.90205 0.82929 1.05416 1.45647 1.07414 1.08872 1.74312 1.18037 0.82181 0.88231 0.76895 1.90795 1.51450 1.49234 1.49860 1.19721 0.93408 0.93181 1.04037 1.21552 0.99955 0.92500 0.97298 1.21011 0.95201 0.96546 0.98645 1.21382 0.92944 0.99530 1.01128 1.17532 0.78204 0.93214 1.04027 1.91524 1.32613 1.93394 1.93999 1.21225 0.96403 0.95276 0.98623 0.90793 0.87864 0.87869 0.74812 0.84274 0.84062 0.84242 0.83246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.94 13.96 55.48 0.77 -24.17 16 2 C 0.07 1.91 5.49 -17.53 -0.10 1.81 16 3 Si 0.91 20.74 28.62 -169.99 -4.86 15.88 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.39 -11.00 10.10 30.92 0.31 -10.69 16 8 H 0.11 3.48 7.09 -52.49 -0.37 3.11 16 9 O -0.24 -6.03 8.58 -20.70 -0.18 -6.21 16 10 C 0.40 8.68 7.97 36.01 0.29 8.97 16 11 O -0.54 -12.87 14.90 -19.05 -0.28 -13.16 16 12 C 0.13 2.22 6.27 -5.19 -0.03 2.19 16 13 N -0.71 -10.37 5.48 -62.42 -0.34 -10.71 16 14 C 0.56 8.06 7.77 -12.32 -0.10 7.97 16 15 O -0.54 -9.17 16.35 5.32 0.09 -9.08 16 16 C -0.10 -1.17 5.87 -104.97 -0.62 -1.79 16 17 C -0.09 -0.89 9.54 -39.18 -0.37 -1.26 16 18 C -0.10 -0.73 10.03 -39.65 -0.40 -1.13 16 19 C -0.13 -1.04 10.02 -39.43 -0.40 -1.43 16 20 C 0.09 0.89 7.29 -39.48 -0.29 0.60 16 21 F -0.14 -1.44 17.26 2.25 0.04 -1.40 16 22 C -0.10 -1.07 9.57 -39.11 -0.37 -1.44 16 23 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 25 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 26 H 0.41 5.72 5.47 -40.82 -0.22 5.49 16 27 H 0.14 1.18 6.40 -52.48 -0.34 0.85 16 28 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 29 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 30 H 0.15 1.69 7.65 -52.48 -0.40 1.29 16 LS Contribution 283.72 15.07 4.28 4.28 Total: -1.00 -32.20 283.72 -4.72 -36.93 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -2.16 Total: 3.85 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -2.07 Total: 3.80 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.43 Total: -34.88 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.37 Total: -28.45 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.86 Total: 15.88 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.20 -4.72 -36.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003360109.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.881 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds