Wall clock time and date at job start Mon Mar 30 2020 19:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86791 * 120.00045 * 2 1 4 4 H 1.48506 * 109.47104 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47383 * 300.00233 * 3 2 1 6 6 H 1.48500 * 109.47288 * 60.00154 * 3 2 1 7 7 C 1.38814 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99955 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00168 * 0.02562 * 7 2 1 10 10 C 1.47583 * 134.49278 * 180.02562 * 9 7 2 11 11 C 1.53946 * 86.11922 * 155.35233 * 10 9 7 12 12 C 1.52990 * 113.74348 * 137.94791 * 11 10 9 13 13 N 1.46499 * 109.47304 * 176.92275 * 12 11 10 14 14 C 1.34777 * 120.00195 * 179.97438 * 13 12 11 15 15 O 1.21633 * 119.99979 * 0.02562 * 14 13 12 16 16 C 1.47264 * 119.99990 * 180.27783 * 14 13 12 17 17 C 1.35212 * 123.14472 * 179.46038 * 16 14 13 18 18 S 1.70936 * 108.82824 * 179.90584 * 17 16 14 19 19 C 1.70765 * 91.13179 * 0.29840 * 18 17 16 20 20 N 1.28650 * 110.56003 * 359.82508 * 19 18 17 21 21 C 1.47811 * 134.45614 * 359.85791 * 9 7 2 22 22 H 0.96993 * 119.99620 * 359.97438 * 1 2 3 23 23 H 1.08997 * 113.77257 * 41.04435 * 10 9 7 24 24 H 1.09006 * 113.76445 * 269.65401 * 10 9 7 25 25 H 1.08994 * 113.73954 * 269.15658 * 11 10 9 26 26 H 1.08998 * 109.47186 * 56.92525 * 12 11 10 27 27 H 1.09002 * 109.47663 * 296.92808 * 12 11 10 28 28 H 0.97000 * 120.00069 * 0.02562 * 13 12 11 29 29 H 1.08001 * 125.57800 * 0.02562 * 17 16 14 30 30 H 1.07996 * 124.72070 * 179.81941 * 19 18 17 31 31 H 1.09001 * 113.76739 * 90.38434 * 21 9 7 32 32 H 1.09000 * 113.83476 * 318.92533 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3466 -4.0833 0.6374 12 6 -0.3636 -5.3136 0.0694 13 7 -1.6206 -5.5283 0.7906 14 6 -2.4196 -6.5618 0.4592 15 8 -2.0969 -7.3166 -0.4383 16 6 -3.6861 -6.7739 1.1800 17 6 -4.5399 -7.7825 0.8935 18 16 -5.8817 -7.6858 1.9481 19 6 -5.2304 -6.3003 2.7044 20 7 -4.1015 -5.9846 2.1742 21 6 -0.1058 -2.7571 0.0002 22 1 -0.4849 0.8400 0.0004 23 1 2.5620 -4.0328 0.6536 24 1 1.8325 -4.2347 -0.9996 25 1 0.3584 -4.0647 1.7271 26 1 0.2761 -6.1885 0.1860 27 1 -0.5739 -5.1558 -0.9884 28 1 -1.8782 -4.9261 1.5061 29 1 -4.3964 -8.5282 0.1255 30 1 -5.7008 -5.7635 3.5150 31 1 -0.5312 -2.8714 -0.9968 32 1 -0.7188 -2.1405 0.6576 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031574466.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:51 Heat of formation + Delta-G solvation = 64.745725 kcal Electronic energy + Delta-G solvation = -17241.037975 eV Core-core repulsion = 14330.521313 eV Total energy + Delta-G solvation = -2910.516661 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.51689 -38.77405 -37.80171 -34.39888 -32.14996 -30.87805 -28.97639 -26.61694 -25.21781 -24.74227 -22.80875 -21.62943 -19.95735 -19.30458 -18.52769 -16.88294 -16.57191 -15.97315 -15.56030 -15.27552 -14.91352 -14.32856 -14.05223 -13.73844 -13.59124 -13.20767 -12.82828 -12.33795 -12.18972 -11.38999 -11.30791 -10.98069 -10.71253 -10.55896 -10.19949 -10.09683 -9.98907 -9.78596 -9.71885 -9.40941 -9.30357 -8.78778 -8.75948 -6.85222 -5.74483 -3.06677 0.30709 0.99959 1.35121 1.86281 3.33120 3.38825 3.40583 3.45610 3.48240 3.96273 4.47304 4.78799 4.98120 5.07809 5.20375 5.34831 5.39126 5.62667 5.70356 5.87357 6.06055 6.26029 6.38282 6.57327 6.66166 6.77187 7.14902 7.25555 7.38696 7.58569 7.71346 8.00473 8.28612 9.07007 9.73188 10.62531 11.42775 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.034849 B = 0.003565 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.283715 B = 7851.701984 C = 8460.213826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.080 0.920 9 N -0.613 5.613 10 C 0.129 3.871 11 C -0.153 4.153 12 C 0.129 3.871 13 N -0.701 5.701 14 C 0.588 3.412 15 O -0.543 6.543 16 C 0.010 3.990 17 C -0.224 4.224 18 S 0.200 5.800 19 C 0.001 3.999 20 N -0.438 5.438 21 C 0.168 3.832 22 H 0.253 0.747 23 H 0.046 0.954 24 H 0.036 0.964 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.411 0.589 29 H 0.190 0.810 30 H 0.206 0.794 31 H 0.027 0.973 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.705 -16.024 5.991 21.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.350 4.350 8 H 0.098 0.902 9 N -0.339 5.339 10 C 0.002 3.998 11 C -0.173 4.173 12 C 0.005 3.995 13 N -0.350 5.350 14 C 0.371 3.629 15 O -0.421 6.421 16 C -0.125 4.125 17 C -0.366 4.366 18 S 0.454 5.546 19 C -0.299 4.299 20 N -0.153 5.153 21 C 0.043 3.957 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.109 0.891 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.247 0.753 29 H 0.207 0.793 30 H 0.222 0.778 31 H 0.045 0.955 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.977 -16.251 5.703 21.564 hybrid contribution 1.080 1.451 -0.236 1.824 sum -11.897 -14.800 5.466 19.760 Atomic orbital electron populations 1.69830 1.05010 1.25178 1.56844 1.24787 0.95680 0.97521 1.02560 0.86047 0.78734 0.83744 0.77245 1.20470 1.21769 1.21713 1.19085 0.90316 0.82015 1.43567 0.90196 1.45983 1.02473 0.99299 1.86166 1.22487 0.93942 0.86464 0.96874 1.23805 0.98178 0.94674 1.00668 1.21533 0.83333 0.98226 0.96414 1.45906 1.21808 1.29110 1.38221 1.17066 0.81944 0.81450 0.82435 1.90804 1.73824 1.46541 1.30899 1.20623 0.99038 0.94989 0.97836 1.26629 0.98702 1.04719 1.06551 1.82895 1.20669 1.25973 1.25036 1.28500 0.95668 1.00310 1.05422 1.66978 1.12856 1.27282 1.08149 1.22355 0.88074 0.88479 0.96783 0.93726 0.93628 0.94617 0.89113 0.91688 0.91144 0.75263 0.79325 0.77763 0.95483 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.69 11.39 55.49 0.63 -27.06 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.22 -6.35 10.70 -15.06 -0.16 -6.51 16 8 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 9 N -0.61 -16.01 3.70 -177.68 -0.66 -16.66 16 10 C 0.13 2.65 8.51 -2.97 -0.03 2.63 16 11 C -0.15 -2.85 3.93 -89.71 -0.35 -3.21 16 12 C 0.13 2.11 5.51 -4.05 -0.02 2.09 16 13 N -0.70 -10.92 5.55 -61.44 -0.34 -11.26 16 14 C 0.59 9.39 7.80 -12.59 -0.10 9.29 16 15 O -0.54 -9.96 16.71 5.25 0.09 -9.87 16 16 C 0.01 0.13 6.70 -84.52 -0.57 -0.43 16 17 C -0.22 -2.33 10.62 29.65 0.31 -2.01 16 18 S 0.20 1.36 22.96 -107.50 -2.47 -1.11 16 19 C 0.00 0.01 12.17 51.43 0.63 0.63 16 20 N -0.44 -5.34 10.12 -12.36 -0.13 -5.47 16 21 C 0.17 3.99 7.08 -2.85 -0.02 3.97 16 22 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 25 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 1.23 7.88 -51.93 -0.41 0.83 16 28 H 0.41 6.13 7.99 -40.82 -0.33 5.80 16 29 H 0.19 1.78 8.03 -52.49 -0.42 1.36 16 30 H 0.21 0.97 8.06 -52.49 -0.42 0.54 16 31 H 0.03 0.67 7.92 -51.93 -0.41 0.26 16 32 H 0.07 1.90 7.16 -51.93 -0.37 1.53 16 LS Contribution 295.54 15.07 4.45 4.45 Total: -1.00 -34.17 295.54 -7.44 -41.61 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -3.60 Total: 1.90 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -0.40 Total: 6.09 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -0.49 Total: -60.46 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.47 Total: -1.11 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.17 -7.44 -41.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031574466.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.356 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds