Wall clock time and date at job start Mon Mar 30 2020 19:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34753 * 116.99842 * 2 1 4 4 O 1.21504 * 120.00067 * 359.97438 * 3 2 1 5 5 C 1.47372 * 119.99813 * 180.02562 * 3 2 1 6 6 N 1.31961 * 126.48344 * 5.36835 * 5 3 2 7 7 N 1.28436 * 110.25212 * 180.02562 * 6 5 3 8 8 H 0.97004 * 124.88750 * 179.97438 * 7 6 5 9 9 C 1.35781 * 110.22815 * 0.02562 * 7 6 5 10 10 C 1.50699 * 126.46400 * 180.02562 * 9 7 6 11 11 C 1.35942 * 107.07020 * 0.25825 * 9 7 6 12 12 N 1.40324 * 127.29362 * 179.73991 * 11 9 7 13 13 C 1.34779 * 119.99683 * 45.75680 * 12 11 9 14 14 O 1.21297 * 120.00431 * 354.29547 * 13 12 11 15 15 C 1.50702 * 120.00020 * 174.29264 * 13 12 11 16 16 C 1.50697 * 109.47176 * 179.97438 * 15 13 12 17 17 H 1.07993 * 119.99989 * 0.02562 * 16 15 13 18 18 C 1.37883 * 119.99862 * 179.97438 * 16 15 13 19 19 N 1.31507 * 120.00036 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99835 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47427 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47224 * 120.00321 * 20 18 16 23 23 H 1.48501 * 109.47146 * 240.00083 * 20 18 16 24 24 H 1.09000 * 109.46610 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46683 * 299.99814 * 1 2 3 26 26 H 1.08993 * 109.47029 * 60.00208 * 1 2 3 27 27 H 1.08998 * 109.47430 * 82.73584 * 10 9 7 28 28 H 1.08997 * 109.47029 * 322.73257 * 10 9 7 29 29 H 1.09004 * 109.46972 * 202.73219 * 10 9 7 30 30 H 0.96998 * 120.00019 * 225.75568 * 12 11 9 31 31 H 1.09000 * 109.47334 * 300.00142 * 15 13 12 32 32 H 1.09002 * 109.46988 * 59.99729 * 15 13 12 33 33 H 0.97002 * 120.00499 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5355 1.2778 -0.0006 6 7 4.3743 0.2640 -0.1004 7 7 5.5871 0.6854 -0.0667 8 1 6.3729 0.1195 -0.1236 9 6 5.6111 2.0369 0.0613 10 6 6.8386 2.9078 0.1370 11 6 4.3188 2.4558 0.1135 12 7 3.8572 3.7741 0.2481 13 6 4.3977 4.7569 -0.4992 14 8 5.3512 4.5228 -1.2115 15 6 3.8173 6.1469 -0.4500 16 6 4.5981 7.0501 -1.3695 17 1 5.4309 6.6569 -1.9335 18 6 4.2485 8.3783 -1.4916 19 7 3.2340 8.8569 -0.8051 20 14 5.2167 9.4980 -2.6308 21 1 6.3018 8.7220 -3.2831 22 1 4.3106 10.0504 -3.6696 23 1 5.8071 10.6119 -1.8460 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 7.2044 3.1086 -0.8700 28 1 7.6124 2.3960 0.7093 29 1 6.5870 3.8487 0.6265 30 1 3.1491 3.9780 0.8789 31 1 2.7752 6.1170 -0.7681 32 1 3.8752 6.5288 0.5693 33 1 2.9882 9.7914 -0.8907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:03 Heat of formation + Delta-G solvation = -50.714503 kcal Electronic energy + Delta-G solvation = -20097.158735 eV Core-core repulsion = 16738.882471 eV Total energy + Delta-G solvation = -3358.276264 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.70485 -40.05570 -38.74917 -36.39503 -34.26762 -32.96991 -32.55747 -30.91953 -28.79153 -27.91247 -26.65919 -24.34354 -23.81116 -21.23280 -20.48988 -19.32254 -18.07870 -17.09506 -16.59932 -16.54929 -16.39555 -15.94280 -15.44645 -15.26225 -14.39349 -14.25310 -13.80119 -13.27127 -12.86555 -12.79477 -12.60053 -12.22346 -12.15190 -12.07720 -11.30600 -11.11479 -10.81201 -10.76124 -10.73796 -10.64932 -9.96319 -9.93774 -9.26085 -9.24388 -8.76713 -8.43747 -7.92490 -6.05088 -4.05060 1.29962 2.04192 2.45373 2.87972 3.11285 3.33728 3.40928 3.48233 3.63875 3.87345 4.46474 4.55030 4.81635 5.02957 5.04628 5.13188 5.33013 5.35259 5.50983 5.73987 5.82388 6.00306 6.21890 6.33700 6.35875 6.91322 7.10319 7.23539 7.34049 7.61272 7.88418 7.95743 8.01873 8.37155 9.05132 9.12108 9.59717 11.07283 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022810 B = 0.005108 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.217344 B = 5480.324798 C = 6471.725408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.348 6.348 3 C 0.555 3.445 4 O -0.489 6.489 5 C -0.021 4.021 6 N -0.227 5.227 7 N -0.371 5.371 8 H 0.449 0.551 9 C 0.017 3.983 10 C -0.067 4.067 11 C 0.101 3.899 12 N -0.658 5.658 13 C 0.517 3.483 14 O -0.528 6.528 15 C 0.008 3.992 16 C -0.508 4.508 17 H 0.076 0.924 18 C 0.055 3.945 19 N -0.899 5.899 20 Si 0.901 3.099 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.101 0.899 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.413 0.587 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.662 -17.597 4.996 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.263 6.263 3 C 0.396 3.604 4 O -0.373 6.373 5 C -0.180 4.180 6 N -0.066 5.066 7 N -0.089 5.089 8 H 0.295 0.705 9 C -0.110 4.110 10 C -0.125 4.125 11 C -0.003 4.003 12 N -0.308 5.308 13 C 0.308 3.692 14 O -0.403 6.403 15 C -0.031 4.031 16 C -0.546 4.546 17 H 0.095 0.905 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.729 3.271 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.119 0.881 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.249 0.751 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.947 -18.323 4.368 18.860 hybrid contribution 0.099 1.238 -0.262 1.269 sum 1.046 -17.085 4.106 17.602 Atomic orbital electron populations 1.23300 0.76045 1.03622 1.02819 1.86626 1.23301 1.32128 1.84279 1.19485 0.86186 0.81723 0.72978 1.90909 1.65280 1.35823 1.45322 1.20632 0.90982 0.90937 1.15467 1.73605 0.89861 1.25474 1.17623 1.43112 1.06541 1.06127 1.53150 0.70541 1.21315 0.97220 0.84115 1.08322 1.20317 0.90779 0.97528 1.03864 1.17137 0.89972 0.86033 1.07194 1.43428 1.41142 1.02979 1.43227 1.22313 0.82400 0.87539 0.76914 1.90533 1.26933 1.83154 1.39646 1.19257 0.98284 0.85496 1.00102 1.21172 1.15346 0.93289 1.24809 0.90548 1.25005 0.95298 0.98157 0.96127 1.69969 1.27456 1.14803 1.41609 0.86381 0.80008 0.80272 0.80482 1.19515 1.21048 1.21028 0.88078 0.91714 0.91680 0.89345 0.92239 0.89537 0.75052 0.92907 0.93181 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.57 101.05 1.07 1.42 16 2 O -0.35 -4.79 10.58 -40.64 -0.43 -5.22 16 3 C 0.55 9.02 7.96 34.45 0.27 9.30 16 4 O -0.49 -8.86 16.02 -19.27 -0.31 -9.17 16 5 C -0.02 -0.34 7.16 -82.68 -0.59 -0.93 16 6 N -0.23 -3.28 12.23 33.45 0.41 -2.88 16 7 N -0.37 -4.44 6.86 33.73 0.23 -4.21 16 8 H 0.45 3.31 8.96 -190.46 -1.71 1.61 16 9 C 0.02 0.26 6.90 -81.67 -0.56 -0.31 16 10 C -0.07 -0.91 8.55 36.00 0.31 -0.60 16 11 C 0.10 1.76 6.47 -83.38 -0.54 1.22 16 12 N -0.66 -12.38 4.97 -9.68 -0.05 -12.43 16 13 C 0.52 11.62 7.11 -10.98 -0.08 11.54 16 14 O -0.53 -12.74 12.01 5.54 0.07 -12.68 16 15 C 0.01 0.20 5.46 -29.04 -0.16 0.04 16 16 C -0.51 -14.47 8.92 -34.44 -0.31 -14.78 16 17 H 0.08 2.24 6.75 -52.49 -0.35 1.89 16 18 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 20 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 1.32 7.56 -51.93 -0.39 0.93 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.38 6.98 -51.93 -0.36 1.02 16 30 H 0.41 7.10 8.54 -40.82 -0.35 6.75 16 31 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 297.34 15.07 4.48 4.48 Total: -1.00 -34.31 297.34 -5.41 -39.71 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -4.84 Total: 2.71 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -0.69 Total: 8.37 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 1.33 Total: -45.10 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.67 Total: -27.06 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.31 -5.41 -39.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.000 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds