Wall clock time and date at job start Mon Mar 30 2020 19:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47257 * 2 1 4 4 N 1.46504 * 109.47341 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99677 * 276.79642 * 4 3 2 6 6 H 1.07990 * 120.00017 * 39.05715 * 5 4 3 7 7 C 1.38814 * 119.99362 * 219.05594 * 5 4 3 8 8 N 1.31614 * 120.00770 * 24.02157 * 7 5 4 9 9 Si 1.86807 * 119.99363 * 204.02209 * 7 5 4 10 10 H 1.48496 * 109.47250 * 60.00310 * 9 7 5 11 11 H 1.48497 * 109.46666 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47074 * 299.99719 * 9 7 5 13 13 C 1.46493 * 119.99917 * 96.79533 * 4 3 2 14 14 C 1.50706 * 109.47085 * 274.02128 * 13 4 3 15 15 C 1.38233 * 119.99984 * 97.15244 * 14 13 4 16 16 C 1.50701 * 120.00010 * 359.97438 * 15 14 13 17 17 C 1.38225 * 120.01154 * 179.97438 * 15 14 13 18 18 C 1.38263 * 120.02270 * 0.02562 * 17 15 14 19 19 C 1.38190 * 120.01650 * 0.23957 * 18 17 15 20 20 C 1.38326 * 120.01006 * 277.12315 * 14 13 4 21 21 Cl 1.73603 * 120.01091 * 0.05168 * 20 14 13 22 22 H 1.08997 * 109.47207 * 60.00330 * 1 2 3 23 23 H 1.09007 * 109.47294 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47444 * 299.99904 * 1 2 3 25 25 H 1.09001 * 109.47453 * 239.99815 * 2 1 3 26 26 H 1.08999 * 109.47352 * 120.00201 * 2 1 3 27 27 H 1.09005 * 109.46983 * 60.00082 * 3 2 1 28 28 H 1.09002 * 109.47442 * 299.99973 * 3 2 1 29 29 H 0.96993 * 120.00469 * 184.98021 * 8 7 5 30 30 H 1.09005 * 109.47299 * 154.02399 * 13 4 3 31 31 H 1.08997 * 109.47642 * 34.02858 * 13 4 3 32 32 H 1.09001 * 109.47179 * 268.75344 * 16 15 14 33 33 H 1.08998 * 109.46793 * 28.74653 * 16 15 14 34 34 H 1.08994 * 109.47428 * 148.74925 * 16 15 14 35 35 H 1.07997 * 119.98943 * 179.97438 * 17 15 14 36 36 H 1.07996 * 119.99465 * 179.97438 * 18 17 15 37 37 H 1.07997 * 120.00700 * 179.73855 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3020 1.1767 6 1 3.8315 0.6184 1.9319 7 6 5.3457 2.0382 1.3993 8 7 5.5393 3.1698 0.7557 9 14 6.6260 1.4228 2.6125 10 1 7.1256 0.0950 2.1739 11 1 7.7567 2.3838 2.6687 12 1 6.0132 1.3010 3.9596 13 6 4.2369 1.5928 -1.2607 14 6 4.4015 0.2428 -1.9101 15 6 3.5239 -0.1600 -2.8992 16 6 2.4021 0.7506 -3.3277 17 6 3.6749 -1.3978 -3.4954 18 6 4.7036 -2.2340 -3.1025 19 6 5.5783 -1.8347 -2.1100 20 6 5.4312 -0.5931 -1.5170 21 17 6.5334 -0.0880 -0.2745 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 6.3774 3.6476 0.8561 30 1 5.2188 2.0223 -1.0616 31 1 3.6808 2.2515 -1.9276 32 1 1.5136 0.5371 -2.7333 33 1 2.6990 1.7885 -3.1771 34 1 2.1822 0.5848 -4.3822 35 1 2.9888 -1.7124 -4.2678 36 1 4.8209 -3.2013 -3.5683 37 1 6.3791 -2.4897 -1.8002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450421104.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:31:24 Heat of formation + Delta-G solvation = 27.800372 kcal Electronic energy + Delta-G solvation = -19253.776538 eV Core-core repulsion = 16443.154443 eV Total energy + Delta-G solvation = -2810.622095 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.08847 -36.00244 -35.48465 -32.96537 -32.40244 -31.12552 -29.82964 -26.77842 -25.52060 -25.44349 -22.36972 -21.25181 -20.38824 -19.81837 -16.79739 -15.88733 -15.43663 -14.97245 -14.56267 -14.29359 -13.75843 -13.35139 -13.10112 -13.00596 -12.78293 -12.27090 -12.13363 -12.07987 -11.69695 -11.49483 -11.07041 -11.00465 -10.84390 -10.73510 -10.46333 -10.31626 -10.16684 -10.04948 -9.77945 -9.66266 -9.51893 -8.29070 -8.04682 -7.86641 -6.56524 -5.75537 -3.30482 1.78853 1.88666 2.99895 3.40074 3.44425 3.61223 4.18912 4.54525 5.26983 5.29147 5.35086 5.53810 5.57067 5.68790 5.69535 5.78473 5.81495 5.99514 6.05071 6.10585 6.16702 6.30312 6.46874 6.49714 6.51930 6.59523 6.66659 6.67468 6.83279 6.99058 7.01501 7.19270 7.28373 7.42864 7.59287 7.88277 8.55673 9.21717 9.84847 10.43484 11.23363 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016680 B = 0.010622 C = 0.007739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.299307 B = 2635.420769 C = 3617.366721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.150 3.850 4 N -0.568 5.568 5 C -0.252 4.252 6 H 0.055 0.945 7 C 0.037 3.963 8 N -0.876 5.876 9 Si 0.860 3.140 10 H -0.268 1.268 11 H -0.291 1.291 12 H -0.278 1.278 13 C 0.174 3.826 14 C -0.069 4.069 15 C -0.079 4.079 16 C -0.115 4.115 17 C -0.129 4.129 18 C -0.129 4.129 19 C -0.129 4.129 20 C -0.023 4.023 21 Cl -0.043 7.043 22 H 0.046 0.954 23 H 0.041 0.959 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.034 0.966 29 H 0.253 0.747 30 H 0.102 0.898 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.954 -6.792 -7.650 10.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.024 3.976 4 N -0.287 5.287 5 C -0.381 4.381 6 H 0.072 0.928 7 C -0.164 4.164 8 N -0.517 5.517 9 Si 0.689 3.311 10 H -0.195 1.195 11 H -0.217 1.217 12 H -0.205 1.205 13 C 0.048 3.952 14 C -0.073 4.073 15 C -0.081 4.081 16 C -0.171 4.171 17 C -0.147 4.147 18 C -0.148 4.148 19 C -0.148 4.148 20 C -0.051 4.051 21 Cl -0.014 7.014 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.119 0.881 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.764 -6.499 -7.436 10.569 hybrid contribution 0.918 -0.648 0.724 1.336 sum -2.846 -7.146 -6.712 10.209 Atomic orbital electron populations 1.21723 0.97525 1.00234 1.00911 1.22176 0.93535 1.01200 1.01707 1.20915 0.85107 0.92825 0.98728 1.43595 0.99201 1.83983 1.01870 1.18757 1.07641 1.17262 0.94455 0.92764 1.24920 1.00621 0.93552 0.97271 1.70106 1.24218 1.12209 1.45185 0.86987 0.82608 0.78975 0.82500 1.19458 1.21725 1.20458 1.20061 1.00933 0.88094 0.86143 1.21042 0.91766 1.00753 0.93736 1.19668 0.96896 0.95040 0.96462 1.20898 0.96571 0.99454 1.00178 1.20917 0.98616 0.94354 1.00841 1.20800 0.96166 0.99532 0.98310 1.20943 1.00610 0.95320 0.97890 1.21039 0.94995 0.94911 0.94138 1.98430 1.62087 1.90701 1.50160 0.93536 0.93983 0.93278 0.92568 0.92669 0.93816 0.94725 0.93658 0.88070 0.94150 0.91098 0.90832 0.92520 0.86835 0.86558 0.86345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.15 0.37 -1.78 16 2 C -0.15 -2.68 5.94 -26.74 -0.16 -2.84 16 3 C 0.15 3.09 5.72 -4.04 -0.02 3.07 16 4 N -0.57 -13.54 2.41 -174.61 -0.42 -13.96 16 5 C -0.25 -6.66 8.23 -15.06 -0.12 -6.78 16 6 H 0.05 1.49 7.94 -52.49 -0.42 1.07 16 7 C 0.04 1.00 3.41 -17.43 -0.06 0.94 16 8 N -0.88 -24.49 11.82 55.49 0.66 -23.84 16 9 Si 0.86 21.19 27.37 -169.99 -4.65 16.54 16 10 H -0.27 -6.39 6.06 56.52 0.34 -6.05 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 13 C 0.17 3.94 4.68 -5.19 -0.02 3.91 16 14 C -0.07 -1.40 5.24 -104.59 -0.55 -1.95 16 15 C -0.08 -1.37 4.75 -104.63 -0.50 -1.87 16 16 C -0.11 -1.69 9.17 36.01 0.33 -1.36 16 17 C -0.13 -1.98 9.71 -39.58 -0.38 -2.37 16 18 C -0.13 -1.97 10.05 -39.59 -0.40 -2.37 16 19 C -0.13 -2.24 9.83 -39.55 -0.39 -2.63 16 20 C -0.02 -0.48 6.31 -39.50 -0.25 -0.73 16 21 Cl -0.04 -0.95 20.93 -51.86 -1.09 -2.04 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.04 0.57 8.14 -51.92 -0.42 0.14 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 1.06 5.83 -51.93 -0.30 0.75 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.04 0.94 8.10 -51.93 -0.42 0.52 16 28 H 0.03 0.66 7.28 -51.93 -0.38 0.28 16 29 H 0.25 6.95 8.32 -40.82 -0.34 6.62 16 30 H 0.10 2.59 4.89 -51.93 -0.25 2.34 16 31 H 0.04 0.87 5.45 -51.93 -0.28 0.59 16 32 H 0.07 1.03 6.86 -51.93 -0.36 0.67 16 33 H 0.07 1.14 5.83 -51.93 -0.30 0.84 16 34 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 301.08 15.07 4.54 4.54 Total: -1.00 -27.81 301.08 -8.41 -36.22 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.29 Total: -0.72 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -2.16 Total: -16.73 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.24 Total: -37.80 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.65 Total: 16.54 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.09 Total: -2.04 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.81 -8.41 -36.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450421104.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.016 kcal (2) G-P(sol) polarization free energy of solvation -27.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds