Wall clock time and date at job start Mon Mar 30 2020 19:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47257 * 2 1 4 4 N 1.46504 * 109.47341 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99677 * 276.79642 * 4 3 2 6 6 H 1.07990 * 120.00017 * 39.05715 * 5 4 3 7 7 C 1.38814 * 119.99362 * 219.05594 * 5 4 3 8 8 N 1.31614 * 120.00770 * 24.02157 * 7 5 4 9 9 Si 1.86807 * 119.99363 * 204.02209 * 7 5 4 10 10 H 1.48496 * 109.47250 * 60.00310 * 9 7 5 11 11 H 1.48497 * 109.46666 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47074 * 299.99719 * 9 7 5 13 13 C 1.46493 * 119.99917 * 96.79533 * 4 3 2 14 14 C 1.50706 * 109.47085 * 274.02128 * 13 4 3 15 15 C 1.38233 * 119.99984 * 97.15244 * 14 13 4 16 16 C 1.50701 * 120.00010 * 359.97438 * 15 14 13 17 17 C 1.38225 * 120.01154 * 179.97438 * 15 14 13 18 18 C 1.38263 * 120.02270 * 0.02562 * 17 15 14 19 19 C 1.38190 * 120.01650 * 0.23957 * 18 17 15 20 20 C 1.38326 * 120.01006 * 277.12315 * 14 13 4 21 21 Cl 1.73603 * 120.01091 * 0.05168 * 20 14 13 22 22 H 1.08997 * 109.47207 * 60.00330 * 1 2 3 23 23 H 1.09007 * 109.47294 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47444 * 299.99904 * 1 2 3 25 25 H 1.09001 * 109.47453 * 239.99815 * 2 1 3 26 26 H 1.08999 * 109.47352 * 120.00201 * 2 1 3 27 27 H 1.09005 * 109.46983 * 60.00082 * 3 2 1 28 28 H 1.09002 * 109.47442 * 299.99973 * 3 2 1 29 29 H 0.96993 * 120.00469 * 184.98021 * 8 7 5 30 30 H 1.09005 * 109.47299 * 154.02399 * 13 4 3 31 31 H 1.08997 * 109.47642 * 34.02858 * 13 4 3 32 32 H 1.09001 * 109.47179 * 268.75344 * 16 15 14 33 33 H 1.08998 * 109.46793 * 28.74653 * 16 15 14 34 34 H 1.08994 * 109.47428 * 148.74925 * 16 15 14 35 35 H 1.07997 * 119.98943 * 179.97438 * 17 15 14 36 36 H 1.07996 * 119.99465 * 179.97438 * 18 17 15 37 37 H 1.07997 * 120.00700 * 179.73855 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3020 1.1767 6 1 3.8315 0.6184 1.9319 7 6 5.3457 2.0382 1.3993 8 7 5.5393 3.1698 0.7557 9 14 6.6260 1.4228 2.6125 10 1 7.1256 0.0950 2.1739 11 1 7.7567 2.3838 2.6687 12 1 6.0132 1.3010 3.9596 13 6 4.2369 1.5928 -1.2607 14 6 4.4015 0.2428 -1.9101 15 6 3.5239 -0.1600 -2.8992 16 6 2.4021 0.7506 -3.3277 17 6 3.6749 -1.3978 -3.4954 18 6 4.7036 -2.2340 -3.1025 19 6 5.5783 -1.8347 -2.1100 20 6 5.4312 -0.5931 -1.5170 21 17 6.5334 -0.0880 -0.2745 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 6.3774 3.6476 0.8561 30 1 5.2188 2.0223 -1.0616 31 1 3.6808 2.2515 -1.9276 32 1 1.5136 0.5371 -2.7333 33 1 2.6990 1.7885 -3.1771 34 1 2.1822 0.5848 -4.3822 35 1 2.9888 -1.7124 -4.2678 36 1 4.8209 -3.2013 -3.5683 37 1 6.3791 -2.4897 -1.8002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450421104.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:31:23 Heat of formation + Delta-G solvation = 14.153151 kcal Electronic energy + Delta-G solvation = -19254.368326 eV Core-core repulsion = 16443.154443 eV Total energy + Delta-G solvation = -2811.213883 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.48422 -37.68621 -37.05902 -34.61359 -33.80229 -32.77114 -31.38618 -28.08432 -27.30436 -26.96270 -23.98297 -22.62696 -21.86535 -21.39766 -18.65093 -17.29538 -17.00963 -16.66794 -16.14177 -15.82984 -15.43968 -14.91338 -14.58553 -14.41321 -14.16777 -13.63313 -13.53447 -13.47668 -13.31123 -13.12400 -12.72501 -12.55327 -12.35632 -12.24320 -12.17114 -11.88504 -11.85783 -11.69870 -11.42608 -11.27461 -11.19533 -10.29032 -9.39780 -9.31454 -8.51456 -7.76569 -5.35491 0.44299 0.53730 1.21922 1.40388 1.45338 1.83020 2.52550 2.85145 3.33224 3.88555 4.00287 4.11687 4.24725 4.29839 4.40267 4.47747 4.54117 4.71440 4.78641 4.81015 4.87719 4.92247 5.01625 5.07207 5.13268 5.23710 5.28545 5.34400 5.48564 5.53199 5.61503 5.64588 5.72472 5.76762 5.90242 6.15025 6.52868 7.25138 7.93066 8.46506 9.16866 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016680 B = 0.010622 C = 0.007739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.299307 B = 2635.420769 C = 3617.366721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.132 4.132 3 C 0.149 3.851 4 N -0.583 5.583 5 C -0.247 4.247 6 H 0.037 0.963 7 C 0.010 3.990 8 N -0.903 5.903 9 Si 0.894 3.106 10 H -0.260 1.260 11 H -0.298 1.298 12 H -0.280 1.280 13 C 0.181 3.819 14 C -0.093 4.093 15 C -0.081 4.081 16 C -0.112 4.112 17 C -0.121 4.121 18 C -0.115 4.115 19 C -0.137 4.137 20 C -0.048 4.048 21 Cl -0.075 7.075 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.027 0.973 27 H 0.025 0.975 28 H 0.051 0.949 29 H 0.247 0.753 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.702 -8.970 -9.919 14.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C 0.024 3.976 4 N -0.302 5.302 5 C -0.377 4.377 6 H 0.055 0.945 7 C -0.189 4.189 8 N -0.546 5.546 9 Si 0.723 3.277 10 H -0.186 1.186 11 H -0.225 1.225 12 H -0.206 1.206 13 C 0.056 3.944 14 C -0.097 4.097 15 C -0.082 4.082 16 C -0.168 4.168 17 C -0.139 4.139 18 C -0.133 4.133 19 C -0.156 4.156 20 C -0.076 4.076 21 Cl -0.047 7.047 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.171 0.829 36 H 0.175 0.825 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.527 -8.706 -9.717 14.169 hybrid contribution 1.390 -0.050 1.293 1.899 sum -4.136 -8.756 -8.424 12.835 Atomic orbital electron populations 1.21655 0.94364 1.01678 1.01908 1.21964 0.96133 0.98788 1.00253 1.21001 0.83515 0.94486 0.98576 1.43751 1.00446 1.84388 1.01636 1.18703 1.07816 1.16062 0.95138 0.94504 1.25209 1.01649 0.93641 0.98366 1.70179 1.24145 1.13272 1.47031 0.86450 0.81172 0.78869 0.81217 1.18589 1.22492 1.20599 1.19810 0.98991 0.89799 0.85840 1.20819 0.93557 0.99515 0.95806 1.19969 0.96566 0.96348 0.95355 1.20916 0.95651 0.98028 1.02238 1.21372 0.98775 0.93067 1.00710 1.21292 0.94603 1.00870 0.96579 1.21202 1.01720 0.94306 0.98368 1.21282 0.95268 0.96529 0.94482 1.98401 1.63108 1.91146 1.52002 0.91713 0.92294 0.93163 0.92690 0.95371 0.95620 0.93089 0.94315 0.91457 0.93784 0.90610 0.92269 0.89285 0.82859 0.82536 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.91 71.98 0.71 -2.98 16 2 C -0.13 -4.66 5.94 30.59 0.18 -4.48 16 3 C 0.15 6.13 5.72 86.38 0.49 6.63 16 4 N -0.58 -28.30 2.41 -706.34 -1.70 -30.00 16 5 C -0.25 -13.47 8.23 84.03 0.69 -12.78 16 6 H 0.04 2.11 7.94 -2.92 -0.02 2.09 16 7 C 0.01 0.55 3.41 84.86 0.29 0.84 16 8 N -0.90 -52.42 11.82 21.65 0.26 -52.16 16 9 Si 0.89 44.74 27.37 68.60 1.88 46.62 16 10 H -0.26 -12.51 6.06 99.48 0.60 -11.91 16 11 H -0.30 -15.15 7.11 99.48 0.71 -14.45 16 12 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 13 C 0.18 8.36 4.68 85.64 0.40 8.76 16 14 C -0.09 -3.73 5.24 -19.84 -0.10 -3.83 16 15 C -0.08 -2.56 4.75 -19.87 -0.09 -2.66 16 16 C -0.11 -2.93 9.17 71.24 0.65 -2.27 16 17 C -0.12 -3.13 9.71 22.27 0.22 -2.91 16 18 C -0.12 -2.99 10.05 22.26 0.22 -2.76 16 19 C -0.14 -4.47 9.83 22.29 0.22 -4.25 16 20 C -0.05 -1.96 6.31 22.32 0.14 -1.82 16 21 Cl -0.08 -3.42 20.93 -2.72 -0.06 -3.48 16 22 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.05 1.95 5.83 -2.39 -0.01 1.94 16 26 H 0.03 1.12 8.14 -2.39 -0.02 1.11 16 27 H 0.03 1.12 8.10 -2.38 -0.02 1.10 16 28 H 0.05 1.90 7.28 -2.39 -0.02 1.88 16 29 H 0.25 14.17 8.32 -92.71 -0.77 13.40 16 30 H 0.07 3.59 4.89 -2.38 -0.01 3.58 16 31 H 0.04 1.93 5.45 -2.39 -0.01 1.92 16 32 H 0.08 1.92 6.86 -2.39 -0.02 1.90 16 33 H 0.06 1.72 5.83 -2.39 -0.01 1.71 16 34 H 0.09 1.74 8.09 -2.39 -0.02 1.72 16 35 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 36 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 37 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -62.49 301.08 5.35 -57.14 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 0.95 Total: 6.39 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 4.03 Total: -24.50 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -1.45 Total: -82.17 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.62 kcal Atomic # 17 Polarization: -3.42 SS G_CDS: -0.06 Total: -3.48 kcal Total: -62.49 5.35 -57.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450421104.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.294 kcal (2) G-P(sol) polarization free energy of solvation -62.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds