Wall clock time and date at job start Mon Mar 30 2020 19:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29422 * 125.69477 * 2 1 4 4 N 1.26395 * 116.47329 * 180.02562 * 3 2 1 5 5 C 1.29416 * 116.48209 * 359.97438 * 4 3 2 6 6 C 1.50695 * 125.70171 * 179.97438 * 5 4 3 7 7 N 1.46907 * 109.47042 * 90.02375 * 6 5 4 8 8 C 1.46907 * 110.99744 * 72.37470 * 7 6 5 9 9 C 1.46898 * 111.00238 * 196.32845 * 7 6 5 10 10 C 1.52995 * 109.46952 * 165.14757 * 9 7 6 11 11 C 1.50694 * 115.55461 * 305.45875 * 10 9 7 12 12 H 1.08001 * 120.00360 * 125.12331 * 11 10 9 13 13 C 1.37882 * 119.99894 * 305.12980 * 11 10 9 14 14 N 1.31511 * 119.99893 * 183.04220 * 13 11 10 15 15 Si 1.86798 * 119.99881 * 3.03516 * 13 11 10 16 16 H 1.48507 * 109.46957 * 95.39717 * 15 13 11 17 17 H 1.48500 * 109.47003 * 215.39463 * 15 13 11 18 18 H 1.48496 * 109.47243 * 335.39691 * 15 13 11 19 19 C 1.52999 * 117.49754 * 159.78827 * 10 9 7 20 20 C 1.53004 * 117.49682 * 91.13202 * 10 9 7 21 21 S 1.71219 * 108.60333 * 0.22976 * 5 4 3 22 22 H 1.08997 * 109.47629 * 89.97657 * 1 2 3 23 23 H 1.09003 * 109.46809 * 209.97451 * 1 2 3 24 24 H 1.08999 * 109.47191 * 329.96970 * 1 2 3 25 25 H 1.09005 * 109.47387 * 330.02888 * 6 5 4 26 26 H 1.08997 * 109.47412 * 210.02390 * 6 5 4 27 27 H 1.08999 * 109.46970 * 179.18344 * 8 7 6 28 28 H 1.08999 * 109.46721 * 299.18533 * 8 7 6 29 29 H 1.09001 * 109.46921 * 59.17939 * 8 7 6 30 30 H 1.09003 * 109.47193 * 285.14999 * 9 7 6 31 31 H 1.09001 * 109.46814 * 45.14700 * 9 7 6 32 32 H 0.97004 * 119.99893 * 179.97438 * 14 13 11 33 33 H 1.09001 * 117.50099 * 0.02562 * 19 10 9 34 34 H 1.09001 * 117.50268 * 145.02084 * 19 10 9 35 35 H 1.09009 * 117.49480 * 214.97523 * 20 10 9 36 36 H 1.08994 * 117.50121 * 359.97205 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2621 1.0511 0.0000 4 7 3.5097 0.8485 -0.0005 5 6 3.8937 -0.3873 -0.0004 6 6 5.3233 -0.8640 -0.0015 7 7 5.7888 -1.0190 1.3832 8 6 5.1708 -2.1908 2.0183 9 6 7.2544 -1.1013 1.4398 10 6 7.7217 -0.8899 2.8812 11 6 7.2390 0.3755 3.5420 12 1 6.7112 0.3260 4.4830 13 6 7.4712 1.5967 2.9453 14 7 7.1032 2.7048 3.5505 15 14 8.3085 1.6771 1.2775 16 1 7.2791 1.7594 0.2102 17 1 9.1799 2.8781 1.2184 18 1 9.1320 0.4576 1.0777 19 6 9.1187 -1.3917 3.2517 20 6 7.8793 -2.1310 3.7620 21 16 2.5061 -1.3904 -0.0062 22 1 -0.3634 0.0004 -1.0276 23 1 -0.3633 -0.8902 0.5135 24 1 -0.3633 0.8897 0.5143 25 1 5.9492 -0.1346 -0.5157 26 1 5.3861 -1.8232 -0.5155 27 1 5.5437 -2.2905 3.0376 28 1 4.0883 -2.0645 2.0380 29 1 5.4218 -3.0865 1.4502 30 1 7.5768 -2.0833 1.0936 31 1 7.6864 -0.3310 0.8010 32 1 7.2668 3.5639 3.1308 33 1 9.7051 -1.8721 2.4685 34 1 9.6886 -0.8068 3.9737 35 1 7.6342 -2.0320 4.8195 36 1 7.6497 -3.0980 3.3147 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602905310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:04 Heat of formation + Delta-G solvation = 111.412941 kcal Electronic energy + Delta-G solvation = -18544.958004 eV Core-core repulsion = 15772.298079 eV Total energy + Delta-G solvation = -2772.659924 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.07858 -38.12900 -35.59862 -33.00920 -31.94809 -29.96056 -27.56018 -26.79177 -25.36153 -24.41212 -22.03025 -21.45259 -19.47730 -19.12701 -18.88226 -16.40137 -15.98136 -15.41413 -15.23745 -14.76342 -14.34922 -13.98781 -13.51537 -13.25207 -13.12039 -12.97755 -12.84501 -12.45985 -12.09387 -11.84115 -11.59854 -11.45123 -10.83156 -10.58931 -10.34745 -10.24046 -9.95822 -9.79494 -9.58239 -9.47130 -9.40749 -8.94823 -8.55278 -8.29692 -7.75166 -5.93098 -3.89375 0.56849 1.01546 1.46829 2.77361 3.39564 3.41515 3.49165 4.04510 4.35822 4.55787 4.62679 4.92025 4.98587 5.15406 5.22595 5.40834 5.49232 5.60439 5.63458 5.71130 5.72175 5.78846 5.90638 5.92813 6.10864 6.20425 6.32803 6.47738 6.58747 6.74503 7.01084 7.16168 7.47881 7.59124 7.91612 8.66143 8.79233 9.08303 9.72064 11.20309 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022764 B = 0.006762 C = 0.005939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.730421 B = 4139.542984 C = 4713.217776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.027 4.027 3 N -0.259 5.259 4 N -0.238 5.238 5 C 0.018 3.982 6 C 0.126 3.874 7 N -0.503 5.503 8 C 0.023 3.977 9 C 0.085 3.915 10 C 0.015 3.985 11 C -0.460 4.460 12 H 0.072 0.928 13 C 0.087 3.913 14 N -0.899 5.899 15 Si 0.876 3.124 16 H -0.274 1.274 17 H -0.300 1.300 18 H -0.261 1.261 19 C -0.201 4.201 20 C -0.189 4.189 21 S 0.141 5.859 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.017 0.983 30 H 0.020 0.980 31 H 0.070 0.930 32 H 0.262 0.738 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.278 -12.091 -9.194 17.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.306 4.306 3 N -0.097 5.097 4 N -0.074 5.074 5 C -0.262 4.262 6 C -0.006 4.006 7 N -0.227 5.227 8 C -0.125 4.125 9 C -0.041 4.041 10 C 0.013 3.987 11 C -0.497 4.497 12 H 0.091 0.909 13 C -0.115 4.115 14 N -0.536 5.536 15 Si 0.707 3.293 16 H -0.200 1.200 17 H -0.228 1.228 18 H -0.186 1.186 19 C -0.239 4.239 20 C -0.226 4.226 21 S 0.384 5.616 22 H 0.105 0.895 23 H 0.101 0.899 24 H 0.111 0.889 25 H 0.122 0.878 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.383 -11.086 -8.953 17.061 hybrid contribution 0.690 -0.429 -1.252 1.493 sum -8.693 -11.514 -10.206 17.672 Atomic orbital electron populations 1.20324 0.84248 1.04560 1.03914 1.29186 1.04049 0.91909 1.05449 1.71491 0.97191 1.26791 1.14192 1.71431 1.05722 1.17002 1.13246 1.29123 1.02273 0.91914 1.02883 1.20622 0.87153 1.00117 0.92687 1.61576 1.07943 1.40616 1.12545 1.22540 0.99200 0.89486 1.01272 1.22185 0.85084 0.97967 0.98910 1.19300 0.94251 0.94627 0.90503 1.20055 1.35770 0.86838 1.07007 0.90948 1.24783 0.94563 0.95422 0.96742 1.69863 1.47527 0.97722 1.38528 0.87102 0.79655 0.76464 0.86113 1.20041 1.22812 1.18639 1.23121 0.92250 1.05205 1.03350 1.22796 1.04355 0.95453 0.99985 1.83437 0.98845 1.12838 1.66487 0.89479 0.89917 0.88920 0.87843 0.92677 0.89369 0.92611 0.96506 0.96203 0.91245 0.92777 0.91623 0.89416 0.89860 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.48 36.00 0.38 -0.24 16 2 C -0.03 -0.38 7.53 -13.30 -0.10 -0.48 16 3 N -0.26 -4.83 11.66 32.58 0.38 -4.45 16 4 N -0.24 -4.94 11.66 32.58 0.38 -4.56 16 5 C 0.02 0.32 6.49 -13.30 -0.09 0.24 16 6 C 0.13 2.17 5.58 -4.97 -0.03 2.15 16 7 N -0.50 -10.01 4.35 -244.36 -1.06 -11.07 16 8 C 0.02 0.39 9.14 60.07 0.55 0.94 16 9 C 0.09 1.76 3.88 -3.83 -0.01 1.75 16 10 C 0.01 0.33 0.61 -155.66 -0.09 0.24 16 11 C -0.46 -12.93 9.18 -34.44 -0.32 -13.24 16 12 H 0.07 2.25 8.06 -52.49 -0.42 1.83 16 13 C 0.09 2.56 5.47 -17.82 -0.10 2.46 16 14 N -0.90 -28.44 13.96 55.43 0.77 -27.67 16 15 Si 0.88 22.33 24.84 -169.99 -4.22 18.11 16 16 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 18 H -0.26 -6.10 5.87 56.52 0.33 -5.77 16 19 C -0.20 -4.18 9.79 -26.69 -0.26 -4.44 16 20 C -0.19 -3.72 8.32 -26.69 -0.22 -3.94 16 21 S 0.14 1.82 21.79 -107.50 -2.34 -0.52 16 22 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.10 1.89 7.73 -51.93 -0.40 1.48 16 26 H 0.06 0.75 8.01 -51.93 -0.42 0.33 16 27 H 0.09 1.58 5.97 -51.93 -0.31 1.27 16 28 H 0.06 0.87 6.41 -51.93 -0.33 0.54 16 29 H 0.02 0.23 8.09 -51.93 -0.42 -0.19 16 30 H 0.02 0.36 8.02 -51.93 -0.42 -0.06 16 31 H 0.07 1.53 2.81 -51.93 -0.15 1.38 16 32 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 35 H 0.08 1.67 8.14 -51.92 -0.42 1.25 16 36 H 0.07 1.17 8.05 -51.93 -0.42 0.76 16 LS Contribution 305.15 15.07 4.60 4.60 Total: -1.00 -33.91 305.15 -6.82 -40.72 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -5.02 Total: -0.57 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -0.29 Total: -14.58 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.47 Total: -47.75 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.22 Total: 18.11 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.34 Total: -0.52 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.91 -6.82 -40.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602905310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.136 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds