Wall clock time and date at job start Mon Mar 30 2020 19:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 110.89307 * 2 1 4 4 C 1.54985 * 110.83452 * 123.54393 * 2 1 3 5 5 C 1.54275 * 103.74924 * 155.29515 * 4 2 1 6 6 C 1.51761 * 106.88832 * 336.88890 * 5 4 2 7 7 C 1.33085 * 126.50244 * 179.60059 * 6 5 4 8 8 C 1.46951 * 120.00058 * 180.02562 * 7 6 5 9 9 O 1.21531 * 120.00064 * 359.97438 * 8 7 6 10 10 O 1.34797 * 120.00118 * 180.02562 * 8 7 6 11 11 C 1.45203 * 117.00219 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47249 * 180.02562 * 11 10 8 13 13 O 1.21295 * 119.99689 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99904 * 179.97438 * 12 11 10 15 15 C 1.37102 * 119.99805 * 179.97438 * 14 12 11 16 16 H 1.08004 * 120.00126 * 0.02562 * 15 14 12 17 17 C 1.38945 * 119.99638 * 180.02562 * 15 14 12 18 18 N 1.31413 * 120.00354 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99685 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47167 * 60.00483 * 19 17 15 21 21 H 1.48503 * 109.46947 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47353 * 299.99965 * 19 17 15 23 23 C 1.51841 * 107.15730 * 359.62545 * 6 5 4 24 24 H 1.08999 * 109.46786 * 182.08841 * 1 2 3 25 25 H 1.08999 * 109.46926 * 302.08204 * 1 2 3 26 26 H 1.08997 * 109.46986 * 62.09090 * 1 2 3 27 27 H 1.08996 * 110.56851 * 273.86294 * 4 2 1 28 28 H 1.09003 * 110.56720 * 36.73192 * 4 2 1 29 29 H 1.09005 * 109.98591 * 96.22513 * 5 4 2 30 30 H 1.08999 * 109.98827 * 217.52561 * 5 4 2 31 31 H 1.08000 * 119.99902 * 0.02977 * 7 6 5 32 32 H 1.09000 * 109.46910 * 300.00102 * 11 10 8 33 33 H 1.09002 * 109.47022 * 59.99855 * 11 10 8 34 34 H 0.96995 * 120.00228 * 0.02562 * 14 12 11 35 35 H 0.96998 * 120.00021 * 179.97438 * 18 17 15 36 36 H 1.09002 * 110.44167 * 265.01895 * 23 6 5 37 37 H 1.09001 * 110.44440 * 142.62011 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9188 1.0184 0.0000 4 6 2.0813 -0.8004 1.2073 5 6 3.4841 -1.2442 0.7433 6 6 3.4704 -1.2334 -0.7743 7 6 4.4850 -1.5445 -1.5773 8 6 4.3131 -1.4842 -3.0355 9 8 3.2442 -1.1507 -3.5081 10 8 5.3405 -1.7999 -3.8489 11 6 5.0987 -1.7186 -5.2784 12 6 6.3510 -2.1050 -6.0225 13 8 7.3489 -2.4186 -5.4084 14 7 6.3616 -2.1032 -7.3702 15 6 7.5010 -2.4543 -8.0471 16 1 8.3899 -2.7327 -7.5004 17 6 7.5122 -2.4519 -9.4365 18 7 6.4308 -2.1126 -10.1018 19 14 9.0644 -2.9309 -10.3589 20 1 9.4448 -4.3206 -9.9995 21 1 8.8172 -2.8471 -11.8208 22 1 10.1652 -2.0051 -9.9897 23 6 2.0809 -0.7999 -1.2066 24 1 -0.3633 -1.0270 0.0375 25 1 -0.3633 0.5458 0.8707 26 1 -0.3633 0.4810 -0.9081 27 1 2.1532 -0.1631 2.0886 28 1 1.4530 -1.6676 1.4108 29 1 4.2366 -0.5479 1.1135 30 1 3.6958 -2.2498 1.1065 31 1 5.4346 -1.8414 -1.1574 32 1 4.2910 -2.3985 -5.5495 33 1 4.8190 -0.6986 -5.5421 34 1 5.5635 -1.8528 -7.8612 35 1 6.4388 -2.1106 -11.0717 36 1 1.4549 -1.6700 -1.4042 37 1 2.1380 -0.1645 -2.0904 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754196416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:17 Heat of formation + Delta-G solvation = -125.161335 kcal Electronic energy + Delta-G solvation = -19381.973179 eV Core-core repulsion = 16124.009002 eV Total energy + Delta-G solvation = -3257.964177 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.23998 -38.74875 -37.96731 -35.94490 -33.96601 -33.01836 -31.35146 -30.24121 -28.54435 -27.16386 -24.97616 -24.23217 -21.45714 -20.39905 -19.54479 -18.61210 -18.02499 -17.42306 -16.27719 -16.09781 -15.98963 -15.31011 -14.70519 -14.45600 -14.01691 -13.96656 -13.84338 -13.45203 -12.96989 -12.83314 -12.39737 -12.19473 -11.99928 -11.94488 -11.61236 -11.57053 -11.19556 -11.09149 -10.85560 -10.79314 -10.47076 -10.32122 -10.27713 -10.01476 -9.57000 -9.31764 -8.48233 -8.05474 -6.47342 -3.89348 1.12595 2.83779 3.07728 3.17575 3.24268 3.29422 3.77723 4.08596 4.20280 4.35574 4.60850 4.71502 4.90140 5.00722 5.06459 5.17940 5.23073 5.24483 5.26971 5.47539 5.53862 5.56227 5.62536 5.64910 5.75350 5.77460 5.85667 5.99557 6.07840 6.11026 6.23012 6.31429 6.76153 7.50027 7.92775 8.04511 8.51995 9.09779 9.42492 9.92878 10.69954 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.056172 B = 0.002919 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.352284 B = 9590.498795 C =10033.665531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 H 0.078 0.922 4 C -0.121 4.121 5 C -0.101 4.101 6 C -0.027 4.027 7 C -0.191 4.191 8 C 0.493 3.507 9 O -0.518 6.518 10 O -0.323 6.323 11 C 0.062 3.938 12 C 0.439 3.561 13 O -0.576 6.576 14 N -0.554 5.554 15 C -0.302 4.302 16 H 0.105 0.895 17 C 0.025 3.975 18 N -0.898 5.898 19 Si 0.935 3.065 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.104 4.104 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.143 0.857 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.395 0.605 35 H 0.274 0.726 36 H 0.088 0.912 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.002 3.542 18.906 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.097 0.903 4 C -0.158 4.158 5 C -0.138 4.138 6 C -0.028 4.028 7 C -0.209 4.209 8 C 0.340 3.660 9 O -0.410 6.410 10 O -0.237 6.237 11 C -0.016 4.016 12 C 0.224 3.776 13 O -0.460 6.460 14 N -0.191 5.191 15 C -0.432 4.432 16 H 0.123 0.877 17 C -0.178 4.178 18 N -0.539 5.539 19 Si 0.761 3.239 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.140 4.140 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.161 0.839 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.228 0.772 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.653 3.429 18.931 21.991 hybrid contribution 0.203 -0.075 -1.006 1.029 sum -10.450 3.354 17.925 21.018 Atomic orbital electron populations 1.21739 0.94537 1.01936 1.01810 1.22199 0.95844 0.99283 0.94620 0.90336 1.22477 0.95323 1.00044 0.97954 1.21401 0.98643 1.02795 0.90932 1.23051 0.94720 0.89356 0.95660 1.21187 1.00891 1.10055 0.88812 1.21450 0.81789 0.73915 0.88823 1.90780 1.27514 1.44881 1.77843 1.86646 1.39712 1.78945 1.18440 1.22709 0.98823 1.02945 0.77105 1.19352 0.88848 0.86108 0.83314 1.90559 1.35016 1.53116 1.67311 1.41699 1.14653 1.59206 1.03548 1.19680 0.91779 1.42786 0.88905 0.87688 1.25307 0.98770 0.97107 0.96589 1.69608 1.28008 1.47599 1.08683 0.85857 0.80885 0.79347 0.77785 1.19759 1.20884 1.19765 1.21892 0.92240 1.00930 0.98961 0.92534 0.92644 0.92352 0.91086 0.91049 0.89632 0.89650 0.83931 0.89616 0.89615 0.77157 0.91602 0.89396 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.28 37.16 0.34 -0.66 16 2 C -0.10 -0.81 3.53 -88.57 -0.31 -1.12 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.12 -0.80 6.33 -25.02 -0.16 -0.96 16 5 C -0.10 -0.76 6.63 -26.69 -0.18 -0.94 16 6 C -0.03 -0.29 6.17 -100.05 -0.62 -0.91 16 7 C -0.19 -2.47 10.07 -37.85 -0.38 -2.85 16 8 C 0.49 8.29 7.90 34.26 0.27 8.56 16 9 O -0.52 -9.16 13.55 -19.29 -0.26 -9.42 16 10 O -0.32 -6.39 9.77 -47.44 -0.46 -6.85 16 11 C 0.06 1.23 5.96 36.00 0.21 1.44 16 12 C 0.44 10.90 7.86 -10.99 -0.09 10.81 16 13 O -0.58 -16.45 16.08 -14.12 -0.23 -16.68 16 14 N -0.55 -14.30 5.29 -10.96 -0.06 -14.36 16 15 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 16 H 0.11 3.06 7.16 -52.48 -0.38 2.69 16 17 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 18 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 19 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 C -0.10 -1.10 4.86 -26.32 -0.13 -1.23 16 24 H 0.06 0.38 8.11 -51.93 -0.42 -0.04 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.44 8.02 -51.93 -0.42 0.03 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 35 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.09 0.95 8.04 -51.93 -0.42 0.53 16 37 H 0.10 1.28 6.26 -51.93 -0.33 0.95 16 LS Contribution 319.35 15.07 4.81 4.81 Total: -1.00 -32.24 319.35 -6.99 -39.23 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.22 Total: 6.91 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -1.27 Total: 4.09 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.67 Total: -38.02 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.95 Total: -32.95 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.24 -6.99 -39.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754196416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.933 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds