Wall clock time and date at job start Mon Mar 30 2020 19:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21574 * 120.00034 * 359.97438 * 14 13 3 16 16 N 1.34779 * 119.99962 * 179.97438 * 14 13 3 17 17 C 1.38635 * 119.99709 * 180.02562 * 16 14 13 18 18 N 1.30959 * 125.69776 * 180.02562 * 17 16 14 19 19 C 1.34643 * 108.62125 * 179.97438 * 18 17 16 20 20 C 1.50705 * 126.11380 * 180.02562 * 19 18 17 21 21 C 1.34159 * 107.77876 * 359.97438 * 19 18 17 22 22 C 1.50707 * 126.37095 * 180.02562 * 21 19 18 23 23 O 1.34190 * 125.70003 * 359.69587 * 17 16 14 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 30 30 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 31 31 H 0.96999 * 119.99798 * 0.02562 * 16 14 13 32 32 H 1.09006 * 109.46503 * 89.97900 * 20 19 18 33 33 H 1.09003 * 109.47294 * 209.97636 * 20 19 18 34 34 H 1.08994 * 109.46904 * 329.98048 * 20 19 18 35 35 H 1.09001 * 109.46638 * 89.99946 * 22 21 19 36 36 H 1.09000 * 109.46670 * 209.99853 * 22 21 19 37 37 H 1.08988 * 109.47156 * 330.00059 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3411 2.6326 0.4319 16 7 0.0784 3.2664 2.5189 17 6 -1.1739 3.8491 2.6375 18 7 -1.6345 4.4612 3.6997 19 6 -2.8823 4.8945 3.4391 20 6 -3.7769 5.6492 4.3884 21 6 -3.1867 4.5352 2.1828 22 6 -4.4820 4.8106 1.4634 23 8 -2.1144 3.8855 1.6810 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8292 -0.0609 -2.9500 30 1 2.2719 2.1231 1.9979 31 1 0.6979 3.2920 3.2648 32 1 -3.6111 6.7201 4.2699 33 1 -4.8189 5.4164 4.1684 34 1 -3.5478 5.3572 5.4132 35 1 -4.4127 5.7660 0.9434 36 1 -4.6724 4.0167 0.7412 37 1 -5.2976 4.8483 2.1854 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274657607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:38:19 Heat of formation + Delta-G solvation = -8.835845 kcal Electronic energy + Delta-G solvation = -20475.393882 eV Core-core repulsion = 17254.766708 eV Total energy + Delta-G solvation = -3220.627174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.12446 -39.72644 -35.77368 -35.04453 -34.52511 -32.65881 -32.05942 -30.77149 -29.15215 -27.15732 -25.30100 -23.24396 -22.10522 -21.82941 -20.13151 -19.57243 -18.17428 -17.80916 -16.84853 -16.14930 -15.51242 -15.19370 -14.89933 -14.34639 -13.92908 -13.58270 -13.38529 -13.30715 -13.10547 -12.72968 -12.42496 -12.32434 -12.02529 -11.68328 -11.31978 -11.16408 -11.01339 -10.89755 -10.39768 -10.36237 -10.28373 -10.14322 -9.77680 -9.60295 -9.11826 -8.57916 -8.11329 -7.78350 -6.18461 -4.28279 1.64666 2.09224 2.68478 3.20345 3.21359 3.29497 3.32215 3.72813 4.26055 4.52794 4.79773 4.89636 5.02933 5.13636 5.33231 5.35317 5.52201 5.63077 5.64826 5.74266 6.19385 6.28313 6.35097 6.41399 6.55514 6.66539 6.72423 7.00494 7.18743 7.24112 7.32887 7.56920 7.67145 7.82287 8.03573 8.11128 8.57800 8.71646 9.02019 9.39008 10.87016 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.039422 B = 0.004102 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.090785 B = 6823.656360 C = 7152.116520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.285 3.715 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.708 5.708 14 C 0.688 3.312 15 O -0.553 6.553 16 N -0.631 5.631 17 C 0.459 3.541 18 N -0.520 5.520 19 C 0.001 3.999 20 C -0.066 4.066 21 C -0.077 4.077 22 C -0.060 4.060 23 O -0.176 6.176 24 H 0.036 0.964 25 H 0.024 0.976 26 H 0.050 0.950 27 H 0.033 0.967 28 H 0.102 0.898 29 H 0.265 0.735 30 H 0.390 0.610 31 H 0.429 0.571 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.014 6.964 10.253 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.184 3.816 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.731 3.269 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.359 5.359 14 C 0.388 3.612 15 O -0.427 6.427 16 N -0.294 5.294 17 C 0.161 3.839 18 N -0.260 5.260 19 C -0.118 4.118 20 C -0.123 4.123 21 C -0.131 4.131 22 C -0.116 4.116 23 O -0.060 6.060 24 H 0.055 0.945 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.223 0.777 31 H 0.268 0.732 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.288 6.806 9.576 16.292 hybrid contribution 1.418 -0.206 -0.020 1.434 sum -9.869 6.600 9.557 15.241 Atomic orbital electron populations 1.21827 0.98276 0.98126 1.01192 1.21975 0.92664 0.99673 1.02510 1.18847 0.94327 0.88985 0.79449 0.92983 1.21231 0.90365 1.39329 1.06506 0.91840 1.24878 0.98773 0.94686 0.95284 1.69898 1.35157 1.37410 1.09317 0.86361 0.84568 0.77811 0.78168 1.19704 1.20828 1.20844 1.45834 1.12468 1.57905 1.19709 1.16127 0.84388 0.79178 0.81546 1.91012 1.51491 1.63123 1.37107 1.41894 1.11100 1.58037 1.18349 1.20924 0.85436 0.94868 0.82624 1.70614 1.11307 1.19281 1.24748 1.21222 0.92460 1.03650 0.94507 1.20064 0.96201 0.98592 0.97428 1.22950 0.90915 1.03843 0.95411 1.20161 0.88479 1.02843 1.00159 1.84677 1.21485 1.60421 1.39464 0.94544 0.95733 0.93062 0.94832 0.88016 0.92489 0.77750 0.73152 0.90883 0.90862 0.90783 0.90247 0.90447 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.29 6.98 2.24 -69.08 -0.15 6.83 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 5 C -0.54 -13.70 8.73 -34.44 -0.30 -14.01 16 6 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.13 11.29 55.43 0.63 -23.50 16 9 Si 0.90 20.17 29.54 -169.99 -5.02 15.14 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.71 -14.17 5.03 -59.82 -0.30 -14.47 16 14 C 0.69 13.91 7.09 -86.92 -0.62 13.29 16 15 O -0.55 -13.27 12.23 -16.56 -0.20 -13.48 16 16 N -0.63 -10.44 5.39 -17.47 -0.09 -10.53 16 17 C 0.46 8.18 8.88 -86.61 -0.77 7.41 16 18 N -0.52 -8.52 11.34 -10.57 -0.12 -8.64 16 19 C 0.00 0.02 7.10 -82.79 -0.59 -0.57 16 20 C -0.07 -0.60 10.21 36.01 0.37 -0.24 16 21 C -0.08 -1.13 7.38 -35.74 -0.26 -1.39 16 22 C -0.06 -0.58 10.21 36.01 0.37 -0.21 16 23 O -0.18 -3.31 9.09 -17.92 -0.16 -3.48 16 24 H 0.04 0.81 5.65 -51.93 -0.29 0.51 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 29 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.39 6.54 8.55 -40.82 -0.35 6.19 16 31 H 0.43 5.46 8.83 -40.82 -0.36 5.10 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.50 7.15 -51.93 -0.37 0.13 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.60 7.15 -51.94 -0.37 0.22 16 LS Contribution 309.93 15.07 4.67 4.67 Total: -1.00 -31.90 309.93 -7.42 -39.32 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -4.93 Total: 8.16 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -1.88 Total: 6.81 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.11 Total: -57.15 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.37 Total: -16.95 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.90 -7.42 -39.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274657607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.485 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds